Wall clock time and date at job start Tue Mar 31 2020 16:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00365 * 2 1 4 4 C 1.50694 * 109.46934 * 66.04682 * 3 2 1 5 5 N 1.29597 * 118.88170 * 359.73655 * 4 3 2 6 6 C 1.37016 * 121.67892 * 179.72525 * 5 4 3 7 7 C 1.39915 * 129.14946 * 180.20823 * 6 5 4 8 8 C 1.32757 * 115.82046 * 180.30279 * 7 6 5 9 9 S 1.75596 * 110.53876 * 0.02562 * 8 7 6 10 10 C 1.39104 * 118.19417 * 0.52613 * 6 5 4 11 11 C 1.41545 * 119.09405 * 359.74722 * 10 6 5 12 12 O 1.21963 * 120.64057 * 180.02562 * 11 10 6 13 13 N 1.34886 * 118.72355 * 0.02562 * 11 10 6 14 14 H 0.97005 * 119.96434 * 180.02562 * 13 11 10 15 15 C 1.46909 * 110.99578 * 236.04890 * 2 1 3 16 16 C 1.52998 * 109.46747 * 199.69951 * 15 2 1 17 17 H 1.09006 * 109.47188 * 304.53054 * 16 15 2 18 18 C 1.47201 * 109.47423 * 64.53410 * 16 15 2 19 19 N 3.65810 * 124.18361 * 156.97701 * 2 1 3 20 20 C 1.53007 * 109.46926 * 184.53765 * 16 15 2 21 21 C 1.50701 * 109.46921 * 175.00050 * 20 16 15 22 22 H 1.07996 * 120.00442 * 359.97438 * 21 20 16 23 23 C 1.37875 * 119.99538 * 180.02562 * 21 20 16 24 24 N 1.31511 * 120.00411 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99732 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47194 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.47273 * 119.99966 * 25 23 21 28 28 H 1.48503 * 109.47074 * 239.99334 * 25 23 21 29 29 H 1.08998 * 109.47157 * 189.23900 * 1 2 3 30 30 H 1.09004 * 109.46608 * 309.23935 * 1 2 3 31 31 H 1.08998 * 109.47032 * 69.23849 * 1 2 3 32 32 H 1.08997 * 109.46913 * 186.05144 * 3 2 1 33 33 H 1.09003 * 109.46976 * 306.05138 * 3 2 1 34 34 H 1.07994 * 122.08797 * 0.32077 * 7 6 5 35 35 H 1.08000 * 124.73327 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47045 * 79.69470 * 15 2 1 37 37 H 1.08999 * 109.46919 * 319.69583 * 15 2 1 38 38 H 1.09004 * 109.46847 * 294.99623 * 20 16 15 39 39 H 1.08997 * 109.47386 * 54.99334 * 20 16 15 40 40 H 0.97003 * 120.00632 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2984 5 7 0.9569 1.3857 2.1813 6 6 0.6048 1.9419 3.3829 7 6 -0.1159 1.3766 4.4406 8 6 -0.3140 2.1637 5.4912 9 16 0.4157 3.7389 5.2272 10 6 0.9880 3.2547 3.6369 11 6 1.7255 3.9586 2.6550 12 8 2.0764 5.1106 2.8483 13 7 2.0329 3.3309 1.5014 14 1 2.5380 3.7961 0.8163 15 6 1.9954 -0.7660 -1.1377 16 6 3.4460 -1.1635 -0.8574 17 1 4.0308 -0.2709 -0.6349 18 6 3.4902 -2.0788 0.2946 19 7 3.5243 -2.7851 1.1835 20 6 4.0300 -1.8623 -2.0869 21 6 5.4925 -2.1440 -1.8572 22 1 5.9590 -1.8532 -0.9276 23 6 6.2353 -2.7719 -2.8344 24 7 5.6674 -3.1255 -3.9667 25 14 8.0484 -3.1204 -2.5501 26 1 8.4425 -2.6267 -1.2062 27 1 8.2899 -4.5834 -2.6310 28 1 8.8542 -2.4277 -3.5874 29 1 -0.3633 -1.0143 0.1650 30 1 -0.3633 0.6501 0.7960 31 1 -0.3633 0.3643 -0.9609 32 1 3.0798 1.3443 -0.1083 33 1 1.5611 1.9274 -0.8309 34 1 -0.4876 0.3633 4.4047 35 1 -0.8493 1.8754 6.3838 36 1 1.9539 -0.1535 -2.0384 37 1 1.3939 -1.6637 -1.2808 38 1 3.5016 -2.8005 -2.2567 39 1 3.9164 -1.2185 -2.9590 40 1 6.1899 -3.5677 -4.6541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131548822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:52 Heat of formation + Delta-G solvation = 61.055894 kcal Electronic energy + Delta-G solvation = -25118.075431 eV Core-core repulsion = 21446.219196 eV Total energy + Delta-G solvation = -3671.856235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85641 -38.64918 -38.05429 -36.77855 -35.52041 -33.65452 -33.12627 -31.80967 -30.55837 -28.28929 -27.41457 -25.38426 -24.65272 -23.36600 -21.80260 -21.63469 -21.03788 -19.49632 -18.68854 -17.08255 -16.89351 -16.60242 -16.50673 -16.26173 -15.37230 -15.23187 -14.74121 -14.50772 -14.37933 -14.19887 -13.73355 -13.42736 -13.23339 -13.07675 -12.87290 -12.66578 -12.36197 -11.98260 -11.82314 -11.79257 -11.50649 -11.38592 -11.23700 -11.08522 -10.73307 -10.67785 -10.54598 -10.37296 -10.24037 -9.99129 -9.57670 -9.34601 -9.25243 -8.49574 -8.33279 -8.16904 -6.13314 -4.16367 -0.08606 1.02542 1.13878 1.56824 2.04702 2.41220 3.26116 3.27479 3.34960 3.39360 3.44361 3.72465 3.79512 3.88791 4.21011 4.34574 4.38920 4.69761 4.82381 4.85196 4.95193 5.13014 5.25308 5.30244 5.42091 5.47604 5.56699 5.66494 5.70763 5.72566 5.89701 6.02767 6.09753 6.24989 6.29458 6.42244 6.92140 7.04396 7.37474 7.46755 7.48685 7.57998 7.82302 8.19382 8.60866 8.88918 9.49652 10.97512 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002594 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.632882 B =10789.738693 C =11023.755386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.523 5.523 3 C 0.094 3.906 4 C 0.400 3.600 5 N -0.471 5.471 6 C 0.174 3.826 7 C -0.123 4.123 8 C -0.177 4.177 9 S 0.205 5.795 10 C -0.342 4.342 11 C 0.576 3.424 12 O -0.533 6.533 13 N -0.637 5.637 14 H 0.423 0.577 15 C 0.061 3.939 16 C 0.012 3.988 17 H 0.097 0.903 18 C 0.255 3.745 19 N -0.477 5.477 20 C 0.031 3.969 21 C -0.526 4.526 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.891 5.891 25 Si 0.890 3.110 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.020 0.980 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.941 14.030 10.931 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.246 5.246 3 C -0.036 4.036 4 C 0.129 3.871 5 N -0.193 5.193 6 C 0.049 3.951 7 C -0.153 4.153 8 C -0.314 4.314 9 S 0.470 5.530 10 C -0.464 4.464 11 C 0.370 3.630 12 O -0.410 6.410 13 N -0.281 5.281 14 H 0.263 0.737 15 C -0.068 4.068 16 C -0.010 4.010 17 H 0.114 0.886 18 C -0.062 4.062 19 N -0.154 5.154 20 C -0.008 4.008 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.718 3.282 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.209 1.209 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.039 0.961 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.174 0.826 35 H 0.197 0.803 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.834 13.856 13.766 24.526 hybrid contribution 1.203 -0.052 -1.947 2.289 sum -13.631 13.804 11.820 22.717 Atomic orbital electron populations 1.22537 0.86297 1.03418 1.00098 1.61723 1.08792 1.09939 1.44173 1.21218 1.02958 0.90583 0.88848 1.23021 0.87743 0.80339 0.95991 1.68672 1.17389 1.32447 1.00805 1.19242 0.94390 0.88918 0.92570 1.19555 1.01686 1.02468 0.91627 1.25819 1.04832 0.97680 1.03094 1.84105 1.49770 1.11548 1.07614 1.24555 1.16733 1.01068 1.04070 1.15760 0.80033 0.86176 0.81060 1.90991 1.55282 1.16430 1.78327 1.44334 1.50521 1.13906 1.19376 0.73699 1.22343 0.95515 0.98259 0.90647 1.19220 0.95307 0.95473 0.91031 0.88566 1.28762 0.91374 0.93062 0.93006 1.80984 1.10210 1.11424 1.12736 1.19185 0.95865 0.96101 0.89652 1.21171 0.94254 1.39098 1.01855 0.92453 1.24943 0.98538 0.95355 0.95088 1.69938 1.36274 1.40599 1.06192 0.86560 0.85203 0.78141 0.78330 1.19663 1.20956 1.20874 0.91193 0.89847 0.96145 0.86372 0.90663 0.82579 0.80255 0.92214 0.89547 0.95488 0.94425 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.10 60.07 0.55 0.79 16 2 N -0.52 -6.02 4.06 -244.37 -0.99 -7.01 16 3 C 0.09 0.84 5.23 -4.98 -0.03 0.82 16 4 C 0.40 4.16 7.30 -155.40 -1.13 3.03 16 5 N -0.47 -5.76 7.31 -8.39 -0.06 -5.82 16 6 C 0.17 2.08 7.01 -84.60 -0.59 1.49 16 7 C -0.12 -1.17 10.15 -40.83 -0.41 -1.59 16 8 C -0.18 -1.34 11.13 28.86 0.32 -1.01 16 9 S 0.20 1.96 23.30 -107.50 -2.50 -0.55 16 10 C -0.34 -4.22 6.48 -38.00 -0.25 -4.47 16 11 C 0.58 7.48 7.76 -14.95 -0.12 7.36 16 12 O -0.53 -8.31 17.97 4.95 0.09 -8.22 16 13 N -0.64 -6.28 5.28 -12.13 -0.06 -6.35 16 14 H 0.42 2.93 8.78 -40.82 -0.36 2.57 16 15 C 0.06 0.76 4.36 -3.82 -0.02 0.75 16 16 C 0.01 0.20 2.26 -93.40 -0.21 -0.01 16 17 H 0.10 1.46 6.67 -51.93 -0.35 1.11 16 18 C 0.25 5.11 13.66 -20.76 -0.28 4.82 16 19 N -0.48 -10.61 18.54 42.15 0.78 -9.83 16 20 C 0.03 0.66 4.42 -27.88 -0.12 0.54 16 21 C -0.53 -13.44 8.60 -34.44 -0.30 -13.73 16 22 H 0.06 1.47 7.59 -52.49 -0.40 1.08 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 25 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.88 5.59 -51.93 -0.29 0.59 16 31 H 0.02 0.18 8.13 -51.93 -0.42 -0.25 16 32 H 0.12 0.97 6.57 -51.93 -0.34 0.63 16 33 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 37 H 0.09 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -34.16 359.76 -8.96 -43.12 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.65 Total: -2.92 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.69 Total: 0.37 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.40 Total: -53.04 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.50 Total: -0.55 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.16 -8.96 -43.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131548822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.173 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds