Wall clock time and date at job start Tue Mar 31 2020 16:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00365 * 2 1 4 4 C 1.50694 * 109.46934 * 66.04682 * 3 2 1 5 5 N 1.29597 * 118.88170 * 359.73655 * 4 3 2 6 6 C 1.37016 * 121.67892 * 179.72525 * 5 4 3 7 7 C 1.39915 * 129.14946 * 180.20823 * 6 5 4 8 8 C 1.32757 * 115.82046 * 180.30279 * 7 6 5 9 9 S 1.75596 * 110.53876 * 0.02562 * 8 7 6 10 10 C 1.39104 * 118.19417 * 0.52613 * 6 5 4 11 11 C 1.41545 * 119.09405 * 359.74722 * 10 6 5 12 12 O 1.21963 * 120.64057 * 180.02562 * 11 10 6 13 13 N 1.34886 * 118.72355 * 0.02562 * 11 10 6 14 14 H 0.97005 * 119.96434 * 180.02562 * 13 11 10 15 15 C 1.46909 * 110.99578 * 236.04890 * 2 1 3 16 16 C 1.52998 * 109.46747 * 199.69951 * 15 2 1 17 17 H 1.09006 * 109.47188 * 304.53054 * 16 15 2 18 18 C 1.47201 * 109.47423 * 64.53410 * 16 15 2 19 19 N 3.65810 * 124.18361 * 156.97701 * 2 1 3 20 20 C 1.53007 * 109.46926 * 184.53765 * 16 15 2 21 21 C 1.50701 * 109.46921 * 175.00050 * 20 16 15 22 22 H 1.07996 * 120.00442 * 359.97438 * 21 20 16 23 23 C 1.37875 * 119.99538 * 180.02562 * 21 20 16 24 24 N 1.31511 * 120.00411 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99732 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47194 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.47273 * 119.99966 * 25 23 21 28 28 H 1.48503 * 109.47074 * 239.99334 * 25 23 21 29 29 H 1.08998 * 109.47157 * 189.23900 * 1 2 3 30 30 H 1.09004 * 109.46608 * 309.23935 * 1 2 3 31 31 H 1.08998 * 109.47032 * 69.23849 * 1 2 3 32 32 H 1.08997 * 109.46913 * 186.05144 * 3 2 1 33 33 H 1.09003 * 109.46976 * 306.05138 * 3 2 1 34 34 H 1.07994 * 122.08797 * 0.32077 * 7 6 5 35 35 H 1.08000 * 124.73327 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47045 * 79.69470 * 15 2 1 37 37 H 1.08999 * 109.46919 * 319.69583 * 15 2 1 38 38 H 1.09004 * 109.46847 * 294.99623 * 20 16 15 39 39 H 1.08997 * 109.47386 * 54.99334 * 20 16 15 40 40 H 0.97003 * 120.00632 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2984 5 7 0.9569 1.3857 2.1813 6 6 0.6048 1.9419 3.3829 7 6 -0.1159 1.3766 4.4406 8 6 -0.3140 2.1637 5.4912 9 16 0.4157 3.7389 5.2272 10 6 0.9880 3.2547 3.6369 11 6 1.7255 3.9586 2.6550 12 8 2.0764 5.1106 2.8483 13 7 2.0329 3.3309 1.5014 14 1 2.5380 3.7961 0.8163 15 6 1.9954 -0.7660 -1.1377 16 6 3.4460 -1.1635 -0.8574 17 1 4.0308 -0.2709 -0.6349 18 6 3.4902 -2.0788 0.2946 19 7 3.5243 -2.7851 1.1835 20 6 4.0300 -1.8623 -2.0869 21 6 5.4925 -2.1440 -1.8572 22 1 5.9590 -1.8532 -0.9276 23 6 6.2353 -2.7719 -2.8344 24 7 5.6674 -3.1255 -3.9667 25 14 8.0484 -3.1204 -2.5501 26 1 8.4425 -2.6267 -1.2062 27 1 8.2899 -4.5834 -2.6310 28 1 8.8542 -2.4277 -3.5874 29 1 -0.3633 -1.0143 0.1650 30 1 -0.3633 0.6501 0.7960 31 1 -0.3633 0.3643 -0.9609 32 1 3.0798 1.3443 -0.1083 33 1 1.5611 1.9274 -0.8309 34 1 -0.4876 0.3633 4.4047 35 1 -0.8493 1.8754 6.3838 36 1 1.9539 -0.1535 -2.0384 37 1 1.3939 -1.6637 -1.2808 38 1 3.5016 -2.8005 -2.2567 39 1 3.9164 -1.2185 -2.9590 40 1 6.1899 -3.5677 -4.6541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131548822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:51 Heat of formation + Delta-G solvation = 38.476911 kcal Electronic energy + Delta-G solvation = -25119.054529 eV Core-core repulsion = 21446.219196 eV Total energy + Delta-G solvation = -3672.835333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.70115 -39.62752 -38.99291 -37.82028 -36.78887 -35.40868 -34.03710 -33.37138 -31.44944 -29.08456 -28.87604 -26.34275 -25.77440 -24.39011 -23.47951 -22.50625 -21.84660 -20.29522 -19.53410 -18.45446 -18.26574 -17.73750 -17.36843 -17.29765 -16.65878 -16.20165 -16.03358 -15.60921 -15.22213 -15.14203 -14.76005 -14.59836 -14.34149 -14.22313 -13.88385 -13.72263 -13.68307 -13.57867 -13.14071 -12.98612 -12.70155 -12.59940 -12.54455 -12.42935 -12.29301 -12.09003 -11.73079 -11.64463 -11.32380 -11.19278 -11.07613 -10.78400 -10.51075 -10.12208 -9.15011 -8.96174 -8.15936 -6.22485 -0.87510 0.29688 0.35143 0.85706 1.22017 1.40189 1.44785 1.53685 1.59349 2.18014 2.26134 2.43727 2.44278 2.69743 2.96031 3.20511 3.40544 3.47073 3.58359 3.91202 4.15463 4.28261 4.31918 4.44733 4.47370 4.74804 4.77791 4.83760 4.84245 4.90226 4.94311 5.00323 5.09452 5.18802 5.33267 5.50528 5.54843 5.70522 5.85283 6.07728 6.16472 6.28843 6.59830 6.76267 6.90418 7.04780 7.45990 8.94826 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002594 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.632882 B =10789.738693 C =11023.755386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.542 5.542 3 C 0.092 3.908 4 C 0.404 3.596 5 N -0.493 5.493 6 C 0.168 3.832 7 C -0.146 4.146 8 C -0.143 4.143 9 S 0.203 5.797 10 C -0.379 4.379 11 C 0.569 3.431 12 O -0.571 6.571 13 N -0.624 5.624 14 H 0.436 0.564 15 C 0.073 3.927 16 C 0.021 3.979 17 H 0.120 0.880 18 C 0.266 3.734 19 N -0.522 5.522 20 C 0.037 3.963 21 C -0.534 4.534 22 H 0.052 0.948 23 C 0.014 3.986 24 N -0.922 5.922 25 Si 0.941 3.059 26 H -0.271 1.271 27 H -0.288 1.288 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.168 0.832 35 H 0.220 0.780 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.001 0.999 39 H 0.043 0.957 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.583 14.785 11.115 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.266 5.266 3 C -0.038 4.038 4 C 0.133 3.867 5 N -0.216 5.216 6 C 0.041 3.959 7 C -0.176 4.176 8 C -0.281 4.281 9 S 0.468 5.532 10 C -0.500 4.500 11 C 0.364 3.636 12 O -0.452 6.452 13 N -0.268 5.268 14 H 0.279 0.721 15 C -0.055 4.055 16 C -0.001 4.001 17 H 0.137 0.863 18 C -0.050 4.050 19 N -0.199 5.199 20 C -0.002 4.002 21 C -0.572 4.572 22 H 0.070 0.930 23 C -0.185 4.185 24 N -0.562 5.562 25 Si 0.768 3.232 26 H -0.196 1.196 27 H -0.215 1.215 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.185 0.815 35 H 0.236 0.764 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.019 0.981 39 H 0.061 0.939 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.470 14.609 13.927 25.430 hybrid contribution 1.360 -0.325 -1.958 2.407 sum -14.110 14.283 11.969 23.374 Atomic orbital electron populations 1.22453 0.85405 1.02819 1.00987 1.61542 1.09663 1.11510 1.43903 1.21425 1.03726 0.89604 0.88995 1.23329 0.87011 0.80184 0.96203 1.68678 1.18325 1.33213 1.01343 1.19623 0.94320 0.88929 0.92991 1.19760 1.02654 1.03399 0.91793 1.26274 1.02568 0.95796 1.03448 1.84078 1.49802 1.12923 1.06409 1.24728 1.18196 1.01679 1.05397 1.15970 0.79915 0.85852 0.81850 1.90957 1.57085 1.17881 1.79260 1.44163 1.49956 1.13770 1.18929 0.72149 1.22141 0.92347 0.98897 0.92131 1.19266 0.98461 0.94853 0.87553 0.86254 1.29448 0.89969 0.92555 0.92986 1.80983 1.11913 1.12697 1.14331 1.19009 0.93692 0.95486 0.91971 1.21598 0.96336 1.38102 1.01209 0.92992 1.25625 1.01942 0.95749 0.95206 1.70016 1.37495 1.41782 1.06926 0.85756 0.81553 0.77577 0.78335 1.19565 1.21456 1.19894 0.92245 0.90236 0.94188 0.85318 0.86965 0.81496 0.76364 0.89278 0.90191 0.98094 0.93923 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.10 127.69 1.16 1.72 16 2 N -0.54 -11.08 4.06 -927.04 -3.76 -14.84 16 3 C 0.09 1.36 5.23 85.56 0.45 1.80 16 4 C 0.40 7.69 7.30 138.12 1.01 8.70 16 5 N -0.49 -11.49 7.31 -180.47 -1.32 -12.81 16 6 C 0.17 3.88 7.01 38.95 0.27 4.15 16 7 C -0.15 -2.58 10.15 21.50 0.22 -2.36 16 8 C -0.14 -1.84 11.13 66.64 0.74 -1.10 16 9 S 0.20 3.71 23.30 -56.49 -1.32 2.39 16 10 C -0.38 -9.23 6.48 23.29 0.15 -9.08 16 11 C 0.57 14.74 7.76 85.04 0.66 15.40 16 12 O -0.57 -18.12 17.97 -5.19 -0.09 -18.21 16 13 N -0.62 -11.61 5.28 -310.34 -1.64 -13.25 16 14 H 0.44 5.39 8.78 -92.70 -0.81 4.58 16 15 C 0.07 1.65 4.36 86.30 0.38 2.03 16 16 C 0.02 0.65 2.26 -12.60 -0.03 0.62 16 17 H 0.12 3.25 6.67 -2.38 -0.02 3.24 16 18 C 0.27 10.45 13.66 89.44 1.22 11.67 16 19 N -0.52 -23.14 18.54 20.00 0.37 -22.77 16 20 C 0.04 1.57 4.42 29.85 0.13 1.70 16 21 C -0.53 -26.92 8.60 25.60 0.22 -26.70 16 22 H 0.05 2.62 7.59 -2.91 -0.02 2.60 16 23 C 0.01 0.72 5.46 84.65 0.46 1.19 16 24 N -0.92 -51.10 13.29 21.45 0.28 -50.81 16 25 Si 0.94 42.42 29.54 68.60 2.03 44.45 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.53 5.59 -2.38 -0.01 1.52 16 31 H 0.04 0.56 8.13 -2.39 -0.02 0.55 16 32 H 0.13 1.65 6.57 -2.39 -0.02 1.64 16 33 H 0.11 0.89 8.12 -2.39 -0.02 0.87 16 34 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.22 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.09 1.53 8.00 -2.39 -0.02 1.51 16 37 H 0.08 1.93 7.94 -2.39 -0.02 1.91 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -75.03 359.76 1.89 -73.14 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 0.29 Total: 2.97 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 7.04 Total: 9.75 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -6.06 Total: -114.48 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.09 Total: -18.21 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.32 Total: 2.39 kcal Total: -75.03 1.89 -73.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131548822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.617 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds