Wall clock time and date at job start Tue Mar 31 2020 16:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47301 * 2 1 4 4 C 1.34231 * 117.00190 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99582 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00198 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47091 * 180.02562 * 6 4 3 8 8 C 1.35712 * 120.90616 * 264.99989 * 7 6 4 9 9 C 1.41166 * 119.79066 * 179.97438 * 8 7 6 10 10 O 1.21777 * 119.15935 * 180.02562 * 9 8 7 11 11 O 1.34171 * 121.68817 * 0.02562 * 9 8 7 12 12 C 1.35088 * 121.49652 * 359.97438 * 11 9 8 13 13 C 1.38912 * 120.66497 * 180.02562 * 12 11 9 14 14 C 1.37820 * 120.04663 * 179.97438 * 13 12 11 15 15 C 1.39229 * 120.62041 * 0.02562 * 14 13 12 16 16 O 1.35955 * 119.88697 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99987 * 0.02562 * 16 15 14 18 18 C 1.50694 * 109.47292 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00360 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99933 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99887 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00003 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46951 * 90.00621 * 22 20 18 24 24 H 1.48501 * 109.47333 * 210.00401 * 22 20 18 25 25 H 1.48495 * 109.47173 * 330.00631 * 22 20 18 26 26 C 1.38097 * 120.23206 * 0.23726 * 15 14 13 27 27 C 1.39831 * 119.56702 * 359.49572 * 26 15 14 28 28 H 1.09002 * 109.47099 * 300.00695 * 1 2 3 29 29 H 1.09003 * 109.47054 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.47429 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.46829 * 239.99720 * 2 1 3 32 32 H 1.09003 * 109.46552 * 119.99872 * 2 1 3 33 33 H 1.08998 * 109.47046 * 59.99607 * 6 4 3 34 34 H 1.09001 * 109.46919 * 299.99922 * 6 4 3 35 35 H 1.07997 * 120.10118 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.97515 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.69221 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.46864 * 300.00316 * 17 16 15 39 39 H 1.08999 * 109.46969 * 59.99698 * 17 16 15 40 40 H 0.97005 * 119.99673 * 179.97438 * 21 20 18 41 41 H 1.07992 * 120.21709 * 179.71684 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 5.4257 2.8584 -0.0023 8 6 6.1280 2.9234 1.1571 9 6 7.5373 2.8465 1.1287 10 8 8.1559 2.9056 2.1759 11 8 8.2126 2.7101 -0.0226 12 6 7.5743 2.6392 -1.2111 13 6 8.2908 2.4974 -2.3927 14 6 7.6266 2.4258 -3.5981 15 6 6.2369 2.4948 -3.6472 16 8 5.5969 2.4233 -4.8446 17 6 6.4129 2.2772 -6.0086 18 6 5.5358 2.2152 -7.2325 19 1 4.4626 2.2804 -7.1315 20 6 6.1035 2.0743 -8.4810 21 7 5.3380 2.0197 -9.5490 22 14 7.9598 1.9608 -8.6556 23 1 8.3782 0.5380 -8.5782 24 1 8.3693 2.5265 -9.9662 25 1 8.6077 2.7275 -7.5614 26 6 5.5064 2.6412 -2.4844 27 6 6.1711 2.7091 -1.2560 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.5851 3.4697 0.8887 34 1 3.5845 3.4692 -0.8912 35 1 5.6103 3.0335 2.0985 36 1 9.3691 2.4432 -2.3667 37 1 8.1893 2.3160 -4.5133 38 1 7.0884 3.1289 -6.0880 39 1 6.9943 1.3584 -5.9318 40 1 5.7374 1.9209 -10.4275 41 1 4.4288 2.6993 -2.5232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154601944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:51 Heat of formation + Delta-G solvation = -154.169795 kcal Electronic energy + Delta-G solvation = -27654.308127 eV Core-core repulsion = 23465.780633 eV Total energy + Delta-G solvation = -4188.527494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.96879 -40.73821 -39.56834 -37.96277 -37.31172 -36.42009 -35.26826 -32.95663 -32.16372 -30.91493 -30.03720 -29.50971 -28.23561 -24.63541 -24.17470 -23.37117 -22.55400 -22.18421 -21.02446 -19.36118 -18.66240 -18.10481 -17.44417 -17.21606 -16.90722 -16.80407 -16.46347 -16.12716 -15.51095 -15.14724 -15.09413 -14.75652 -14.34852 -14.14934 -13.97669 -13.68088 -13.42985 -13.28580 -13.10749 -12.89608 -12.82703 -12.43113 -12.31744 -12.15772 -12.05615 -11.90968 -11.30821 -11.23978 -11.17661 -10.91091 -10.83388 -10.60448 -10.39578 -10.16057 -10.05336 -9.51234 -8.88636 -8.75698 -7.80184 -6.35090 -4.38478 -0.00936 1.15353 1.40517 1.88136 2.31115 2.42316 2.80916 3.08791 3.13705 3.17279 3.66340 3.71709 3.77160 4.01424 4.13580 4.24475 4.39298 4.60337 4.65064 4.67019 4.76228 4.88302 4.95109 4.97220 5.05450 5.10510 5.14587 5.33654 5.42481 5.46775 5.60327 5.65866 5.78721 5.86995 5.96706 6.07500 6.13392 6.30934 6.46606 6.53990 7.11727 7.22270 7.41272 7.41644 7.75002 8.32696 8.73102 9.19660 10.77002 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003573 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.950429 B = 7834.443990 C =10422.326825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.466 3.534 5 O -0.492 6.492 6 C -0.087 4.087 7 C 0.043 3.957 8 C -0.233 4.233 9 C 0.512 3.488 10 O -0.475 6.475 11 O -0.267 6.267 12 C 0.092 3.908 13 C -0.087 4.087 14 C -0.154 4.154 15 C 0.138 3.862 16 O -0.296 6.296 17 C 0.165 3.835 18 C -0.533 4.533 19 H 0.087 0.913 20 C 0.080 3.920 21 N -0.885 5.885 22 Si 0.873 3.127 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.113 4.113 27 C -0.103 4.103 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.271 0.729 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 0.960 19.407 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.307 3.693 5 O -0.378 6.378 6 C -0.124 4.124 7 C 0.042 3.958 8 C -0.252 4.252 9 C 0.362 3.638 10 O -0.364 6.364 11 O -0.178 6.178 12 C 0.048 3.952 13 C -0.106 4.106 14 C -0.173 4.173 15 C 0.090 3.910 16 O -0.208 6.208 17 C 0.092 3.908 18 C -0.570 4.570 19 H 0.105 0.895 20 C -0.124 4.124 21 N -0.521 5.521 22 Si 0.698 3.302 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.132 4.132 27 C -0.104 4.104 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.180 0.820 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.267 0.633 19.615 20.084 hybrid contribution 1.014 -0.317 -0.361 1.123 sum -3.253 0.316 19.254 19.529 Atomic orbital electron populations 1.21818 0.92363 1.03167 1.03648 1.23101 0.95508 0.79629 1.02972 1.86469 1.23814 1.33008 1.84024 1.23136 0.81025 0.91862 0.73239 1.90756 1.60313 1.42757 1.43968 1.20429 0.90371 0.93123 1.08486 1.20819 0.93944 0.89182 0.91897 1.22442 0.93536 1.09406 0.99818 1.19017 0.87910 0.75444 0.81474 1.90960 1.71602 1.47691 1.26171 1.83497 1.43042 1.77210 1.14081 1.18773 0.89427 1.03637 0.83361 1.20278 1.00680 1.01299 0.88334 1.21516 0.93921 1.03167 0.98661 1.19102 0.90606 0.93620 0.87679 1.86224 1.37051 1.85266 1.12268 1.21112 0.92224 0.95807 0.81701 1.20715 0.95935 1.52599 0.87765 0.89475 1.24698 0.98359 0.94162 0.95176 1.69842 1.35520 1.48276 0.98511 0.86906 0.85431 0.79239 0.78588 1.19523 1.20309 1.18907 1.20200 1.00165 1.04474 0.88328 1.18490 0.91573 1.07239 0.93119 0.91517 0.91156 0.90084 0.90731 0.91134 0.85166 0.84909 0.82018 0.83781 0.83463 0.96012 0.96525 0.91895 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.36 -3.48 10.22 -39.26 -0.40 -3.88 16 4 C 0.47 5.03 7.95 36.01 0.29 5.31 16 5 O -0.49 -7.06 15.78 -18.75 -0.30 -7.36 16 6 C -0.09 -0.69 5.46 -29.04 -0.16 -0.85 16 7 C 0.04 0.47 4.57 -102.15 -0.47 0.01 16 8 C -0.23 -2.65 9.60 -39.37 -0.38 -3.03 16 9 C 0.51 7.50 7.89 31.84 0.25 7.75 16 10 O -0.47 -8.10 17.91 -19.58 -0.35 -8.45 16 11 O -0.27 -4.02 9.82 -20.85 -0.20 -4.22 16 12 C 0.09 1.32 6.76 -38.45 -0.26 1.06 16 13 C -0.09 -1.19 9.99 -39.48 -0.39 -1.59 16 14 C -0.15 -2.36 9.01 -39.37 -0.35 -2.71 16 15 C 0.14 2.36 6.68 -39.27 -0.26 2.10 16 16 O -0.30 -6.21 10.11 -19.60 -0.20 -6.41 16 17 C 0.16 3.72 3.56 36.00 0.13 3.85 16 18 C -0.53 -14.50 9.99 -34.44 -0.34 -14.85 16 19 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 21 N -0.88 -25.55 13.96 55.43 0.77 -24.78 16 22 Si 0.87 19.53 27.47 -169.99 -4.67 14.86 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 26 C -0.11 -1.64 9.35 -39.04 -0.37 -2.01 16 27 C -0.10 -1.41 5.87 -105.04 -0.62 -2.02 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.13 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.13 0.84 6.88 -51.93 -0.36 0.49 16 35 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.15 2.19 6.26 -52.49 -0.33 1.86 16 38 H 0.02 0.48 6.71 -51.93 -0.35 0.13 16 39 H 0.02 0.37 7.08 -51.93 -0.37 0.00 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.14 1.78 6.64 -52.49 -0.35 1.44 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -33.25 359.47 -7.07 -40.32 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.72 Total: -0.81 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.42 Total: -4.68 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.77 Total: -24.78 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.45 Total: -30.32 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.25 -7.07 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154601944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.854 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds