Wall clock time and date at job start Tue Mar 31 2020 16:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47301 * 2 1 4 4 C 1.34231 * 117.00190 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99582 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00198 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47091 * 180.02562 * 6 4 3 8 8 C 1.35712 * 120.90616 * 264.99989 * 7 6 4 9 9 C 1.41166 * 119.79066 * 179.97438 * 8 7 6 10 10 O 1.21777 * 119.15935 * 180.02562 * 9 8 7 11 11 O 1.34171 * 121.68817 * 0.02562 * 9 8 7 12 12 C 1.35088 * 121.49652 * 359.97438 * 11 9 8 13 13 C 1.38912 * 120.66497 * 180.02562 * 12 11 9 14 14 C 1.37820 * 120.04663 * 179.97438 * 13 12 11 15 15 C 1.39229 * 120.62041 * 0.02562 * 14 13 12 16 16 O 1.35955 * 119.88697 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99987 * 0.02562 * 16 15 14 18 18 C 1.50694 * 109.47292 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00360 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99933 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99887 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00003 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46951 * 90.00621 * 22 20 18 24 24 H 1.48501 * 109.47333 * 210.00401 * 22 20 18 25 25 H 1.48495 * 109.47173 * 330.00631 * 22 20 18 26 26 C 1.38097 * 120.23206 * 0.23726 * 15 14 13 27 27 C 1.39831 * 119.56702 * 359.49572 * 26 15 14 28 28 H 1.09002 * 109.47099 * 300.00695 * 1 2 3 29 29 H 1.09003 * 109.47054 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.47429 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.46829 * 239.99720 * 2 1 3 32 32 H 1.09003 * 109.46552 * 119.99872 * 2 1 3 33 33 H 1.08998 * 109.47046 * 59.99607 * 6 4 3 34 34 H 1.09001 * 109.46919 * 299.99922 * 6 4 3 35 35 H 1.07997 * 120.10118 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.97515 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.69221 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.46864 * 300.00316 * 17 16 15 39 39 H 1.08999 * 109.46969 * 59.99698 * 17 16 15 40 40 H 0.97005 * 119.99673 * 179.97438 * 21 20 18 41 41 H 1.07992 * 120.21709 * 179.71684 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 5.4257 2.8584 -0.0023 8 6 6.1280 2.9234 1.1571 9 6 7.5373 2.8465 1.1287 10 8 8.1559 2.9056 2.1759 11 8 8.2126 2.7101 -0.0226 12 6 7.5743 2.6392 -1.2111 13 6 8.2908 2.4974 -2.3927 14 6 7.6266 2.4258 -3.5981 15 6 6.2369 2.4948 -3.6472 16 8 5.5969 2.4233 -4.8446 17 6 6.4129 2.2772 -6.0086 18 6 5.5358 2.2152 -7.2325 19 1 4.4626 2.2804 -7.1315 20 6 6.1035 2.0743 -8.4810 21 7 5.3380 2.0197 -9.5490 22 14 7.9598 1.9608 -8.6556 23 1 8.3782 0.5380 -8.5782 24 1 8.3693 2.5265 -9.9662 25 1 8.6077 2.7275 -7.5614 26 6 5.5064 2.6412 -2.4844 27 6 6.1711 2.7091 -1.2560 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.5851 3.4697 0.8887 34 1 3.5845 3.4692 -0.8912 35 1 5.6103 3.0335 2.0985 36 1 9.3691 2.4432 -2.3667 37 1 8.1893 2.3160 -4.5133 38 1 7.0884 3.1289 -6.0880 39 1 6.9943 1.3584 -5.9318 40 1 5.7374 1.9209 -10.4275 41 1 4.4288 2.6993 -2.5232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154601944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:50 Heat of formation + Delta-G solvation = -173.281462 kcal Electronic energy + Delta-G solvation = -27655.136871 eV Core-core repulsion = 23465.780633 eV Total energy + Delta-G solvation = -4189.356238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.07033 -41.58473 -40.87876 -39.24059 -38.20915 -37.54949 -36.31106 -34.97188 -32.79993 -32.12657 -30.93805 -30.77328 -29.84941 -25.82232 -25.19617 -24.42173 -23.87721 -23.35226 -21.87968 -20.51016 -19.96639 -19.07315 -18.90286 -18.48226 -17.91420 -17.76292 -17.50885 -17.28554 -16.88713 -16.64841 -16.47210 -15.82589 -15.47730 -15.11740 -15.04090 -14.68405 -14.55438 -14.40683 -14.36614 -13.91382 -13.82825 -13.55232 -13.51803 -13.20720 -13.03086 -12.84438 -12.77188 -12.52007 -12.45533 -12.12505 -11.86947 -11.69482 -11.59309 -11.54762 -11.38585 -11.29019 -10.89450 -9.83575 -9.07972 -8.42315 -6.53419 -1.01720 -0.02885 0.33577 1.07563 1.29705 1.34345 1.36513 1.45917 1.48916 1.80708 2.25509 2.34423 2.56831 2.90694 2.91907 2.97658 3.26353 3.61769 3.69449 3.87185 3.94164 4.00433 4.05004 4.07316 4.13553 4.34377 4.35223 4.40853 4.51452 4.61940 4.76581 4.78018 4.80087 4.83269 4.92061 4.93826 5.06285 5.15110 5.25255 5.34180 5.43034 5.90087 6.00443 6.30160 6.50762 6.61223 6.64148 7.10293 8.73900 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003573 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.950429 B = 7834.443990 C =10422.326825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.466 3.534 5 O -0.535 6.535 6 C -0.084 4.084 7 C 0.048 3.952 8 C -0.226 4.226 9 C 0.506 3.494 10 O -0.506 6.506 11 O -0.277 6.277 12 C 0.084 3.916 13 C -0.080 4.080 14 C -0.157 4.157 15 C 0.106 3.894 16 O -0.323 6.323 17 C 0.176 3.824 18 C -0.554 4.554 19 H 0.037 0.963 20 C 0.021 3.979 21 N -0.935 5.935 22 Si 0.946 3.054 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.234 1.234 26 C -0.107 4.107 27 C -0.106 4.106 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.195 0.805 36 H 0.171 0.829 37 H 0.154 0.846 38 H 0.037 0.963 39 H 0.031 0.969 40 H 0.275 0.725 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 1.568 21.285 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.310 3.690 5 O -0.424 6.424 6 C -0.120 4.120 7 C 0.047 3.953 8 C -0.245 4.245 9 C 0.357 3.643 10 O -0.398 6.398 11 O -0.189 6.189 12 C 0.040 3.960 13 C -0.098 4.098 14 C -0.176 4.176 15 C 0.060 3.940 16 O -0.236 6.236 17 C 0.102 3.898 18 C -0.592 4.592 19 H 0.056 0.944 20 C -0.178 4.178 21 N -0.574 5.574 22 Si 0.767 3.233 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.157 1.157 26 C -0.126 4.126 27 C -0.107 4.107 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.193 0.807 34 H 0.170 0.830 35 H 0.212 0.788 36 H 0.188 0.812 37 H 0.171 0.829 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.401 1.257 21.521 21.824 hybrid contribution 0.622 -0.518 -0.833 1.162 sum -2.780 0.738 20.688 20.887 Atomic orbital electron populations 1.21827 0.90356 1.04301 1.03917 1.23284 0.97108 0.79140 1.02458 1.86481 1.23378 1.33621 1.83574 1.23671 0.80990 0.92458 0.71846 1.90748 1.61151 1.44346 1.46180 1.20637 0.87821 0.91858 1.11668 1.21000 0.95613 0.88179 0.90474 1.22617 0.91708 1.08830 1.01308 1.19540 0.89092 0.74753 0.80869 1.90945 1.72416 1.49336 1.27082 1.83454 1.43821 1.77168 1.14450 1.19023 0.90011 1.03575 0.83405 1.20507 1.01963 0.99903 0.87412 1.21567 0.93151 1.03307 0.99535 1.19386 0.91793 0.96114 0.86755 1.86140 1.37655 1.86662 1.13148 1.20792 0.91355 0.96817 0.80822 1.20993 0.94508 1.53066 0.90585 0.94441 1.25743 1.04559 0.93173 0.94349 1.70001 1.38389 1.49614 0.99365 0.85744 0.77916 0.80153 0.79509 1.18387 1.19983 1.15722 1.20356 1.00899 1.03443 0.87878 1.18723 0.91669 1.06383 0.93887 0.90549 0.91500 0.88570 0.92140 0.90867 0.80652 0.82977 0.78810 0.81181 0.82869 0.94548 0.95170 0.91541 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 71.98 0.74 -0.82 16 2 C 0.05 0.87 6.19 71.98 0.45 1.31 16 3 O -0.35 -6.31 10.22 -51.42 -0.53 -6.83 16 4 C 0.47 9.14 7.95 71.24 0.57 9.71 16 5 O -0.53 -14.85 15.78 21.96 0.35 -14.51 16 6 C -0.08 -1.03 5.46 29.10 0.16 -0.88 16 7 C 0.05 0.94 4.57 -18.26 -0.08 0.86 16 8 C -0.23 -4.51 9.60 22.40 0.22 -4.29 16 9 C 0.51 14.02 7.89 68.54 0.54 14.56 16 10 O -0.51 -16.74 17.91 19.03 0.34 -16.40 16 11 O -0.28 -7.95 9.82 14.51 0.14 -7.81 16 12 C 0.08 2.26 6.76 23.00 0.16 2.42 16 13 C -0.08 -2.01 9.99 22.33 0.22 -1.79 16 14 C -0.16 -4.55 9.01 22.41 0.20 -4.35 16 15 C 0.11 3.56 6.68 22.47 0.15 3.71 16 16 O -0.32 -13.70 10.11 -93.04 -0.94 -14.64 16 17 C 0.18 7.90 3.56 71.23 0.25 8.15 16 18 C -0.55 -31.19 9.99 25.60 0.26 -30.93 16 19 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 20 C 0.02 1.17 5.47 84.66 0.46 1.63 16 21 N -0.94 -55.75 13.96 21.45 0.30 -55.45 16 22 Si 0.95 39.51 27.47 68.60 1.88 41.40 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 26 C -0.11 -3.00 9.35 22.62 0.21 -2.79 16 27 C -0.11 -2.69 5.87 -20.14 -0.12 -2.81 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 32 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.18 0.63 8.07 -2.39 -0.02 0.61 16 34 H 0.15 1.38 6.88 -2.39 -0.02 1.37 16 35 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.15 4.20 6.26 -2.91 -0.02 4.18 16 38 H 0.04 1.52 6.71 -2.39 -0.02 1.51 16 39 H 0.03 1.27 7.08 -2.39 -0.02 1.26 16 40 H 0.28 15.07 8.31 -92.70 -0.77 14.30 16 41 H 0.15 3.73 6.64 -2.91 -0.02 3.71 16 Total: -1.00 -76.17 359.47 6.95 -69.23 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.02 Total: 11.31 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.38 Total: -6.30 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.30 Total: -55.45 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -0.64 Total: -60.18 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.88 Total: 41.40 kcal Total: -76.17 6.95 -69.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154601944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.056 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds