Wall clock time and date at job start Tue Mar 31 2020 16:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36007 * 116.99577 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98217 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.01896 * 179.97438 * 5 4 3 7 7 C 1.38883 * 119.97644 * 359.97438 * 6 5 4 8 8 N 1.39950 * 120.01312 * 180.02562 * 7 6 5 9 9 C 1.46495 * 120.00201 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47234 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99844 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99814 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99714 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00017 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00137 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99741 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47029 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46746 * 119.99946 * 17 15 13 20 20 H 1.48497 * 109.47058 * 239.99725 * 17 15 13 21 21 C 1.38832 * 119.96873 * 0.02562 * 7 6 5 22 22 C 1.50700 * 120.01385 * 180.02562 * 21 7 6 23 23 F 1.39899 * 109.47072 * 180.02562 * 22 21 7 24 24 F 1.39895 * 109.47285 * 300.00001 * 22 21 7 25 25 F 1.39900 * 109.46747 * 60.00056 * 22 21 7 26 26 C 1.38136 * 119.97713 * 359.74134 * 21 7 6 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 1.07994 * 119.99207 * 0.02562 * 5 4 3 33 33 H 1.08000 * 120.01269 * 180.02562 * 6 5 4 34 34 H 0.97001 * 119.99395 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.46960 * 300.00300 * 9 8 7 36 36 H 1.09009 * 109.46777 * 59.99734 * 9 8 7 37 37 H 0.96994 * 120.00314 * 0.02562 * 12 10 9 38 38 H 0.97009 * 119.99683 * 180.02562 * 16 15 13 39 39 H 1.07999 * 119.99381 * 180.25296 * 26 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1993 0.4251 0.0005 6 6 5.5684 0.6052 0.0005 7 6 6.0995 1.8884 0.0000 8 7 7.4870 2.0718 -0.0005 9 6 8.3794 0.9100 -0.0011 10 6 9.8122 1.3772 -0.0022 11 8 10.0631 2.5639 -0.0020 12 7 10.8146 0.4764 -0.0024 13 6 12.1180 0.9014 -0.0029 14 1 12.3415 1.9580 -0.0027 15 6 13.1516 -0.0273 -0.0036 16 7 12.8797 -1.3130 -0.0033 17 14 14.9276 0.5518 -0.0050 18 1 14.9642 2.0363 -0.0045 19 1 15.6161 0.0398 1.2071 20 1 15.6143 0.0396 -1.2179 21 6 5.2535 2.9892 0.0001 22 6 5.8287 4.3821 -0.0011 23 9 4.7876 5.3166 -0.0002 24 9 6.6171 4.5620 1.1405 25 9 6.6154 4.5607 -1.1440 26 6 3.8842 2.8072 -0.0048 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.7861 -0.5726 -0.0003 33 1 6.2259 -0.2516 0.0001 34 1 7.8576 2.9682 -0.0012 35 1 8.1935 0.3087 0.8888 36 1 8.1928 0.3090 -0.8912 37 1 10.6139 -0.4726 -0.0021 38 1 13.6013 -1.9613 -0.0034 39 1 3.2258 3.6633 -0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175123629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:03 Heat of formation + Delta-G solvation = -201.567248 kcal Electronic energy + Delta-G solvation = -28255.149766 eV Core-core repulsion = 23555.002974 eV Total energy + Delta-G solvation = -4700.146791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.04948 -47.58294 -47.45503 -40.36872 -38.79316 -37.92135 -34.92047 -33.97338 -32.01907 -31.94853 -31.41358 -29.20548 -26.91593 -25.89323 -24.53759 -23.76266 -22.08606 -21.41839 -19.57970 -18.96002 -18.48962 -18.32896 -18.05605 -17.36571 -16.70320 -16.28023 -15.98206 -15.57810 -15.06490 -14.95027 -14.62830 -14.38295 -14.37120 -13.95858 -13.92404 -13.84041 -13.65229 -13.63541 -13.61784 -13.30680 -12.97550 -12.88995 -12.85336 -12.32289 -12.28574 -12.00763 -11.75021 -11.65076 -11.20344 -11.06456 -10.94906 -10.43339 -10.35192 -9.70044 -9.60465 -9.36594 -8.68321 -8.14670 -7.24483 -6.56069 -3.97605 0.87191 1.45620 2.69600 3.07659 3.09720 3.20348 3.26586 3.39439 3.46679 3.68285 3.88788 4.08858 4.14775 4.54560 4.60239 4.63542 4.73411 4.76429 4.81095 4.96414 5.06939 5.11675 5.27570 5.29268 5.48068 5.55514 5.65513 5.70510 5.76895 5.78487 5.97987 6.03573 6.17835 6.32412 7.12834 7.31853 7.42929 7.77489 7.90592 8.40793 9.01207 9.33879 9.82273 10.60964 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002797 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.612770 B =10008.465896 C =11578.679757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.057 3.943 5 C -0.120 4.120 6 C -0.165 4.165 7 C 0.248 3.752 8 N -0.718 5.718 9 C 0.110 3.890 10 C 0.428 3.572 11 O -0.590 6.590 12 N -0.550 5.550 13 C -0.303 4.303 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.896 5.896 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.236 4.236 22 C 0.513 3.487 23 F -0.180 7.180 24 F -0.174 7.174 25 F -0.174 7.174 26 C -0.054 4.054 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.413 0.587 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.892 -0.125 -0.001 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.011 3.989 5 C -0.140 4.140 6 C -0.188 4.188 7 C 0.139 3.861 8 N -0.348 5.348 9 C -0.019 4.019 10 C 0.213 3.787 11 O -0.476 6.476 12 N -0.185 5.185 13 C -0.433 4.433 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.243 4.243 22 C 0.459 3.541 23 F -0.161 7.161 24 F -0.155 7.155 25 F -0.155 7.155 26 C -0.074 4.074 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.253 0.747 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.535 0.507 -0.001 21.541 hybrid contribution 1.167 -0.180 -0.002 1.181 sum -20.368 0.326 -0.003 20.370 Atomic orbital electron populations 1.21764 0.92925 1.02718 1.03475 1.22729 0.95738 0.82306 1.01247 1.86050 1.18521 1.28749 1.89991 1.18369 0.82569 0.93183 1.04792 1.21199 0.93436 0.98228 1.01121 1.20507 0.94911 0.95103 1.08279 1.17416 0.83708 0.92702 0.92266 1.44809 1.01019 1.10337 1.78683 1.21045 0.90056 0.88451 1.02308 1.19663 0.86051 0.87188 0.85805 1.90538 1.83814 1.16495 1.56728 1.41782 1.05469 1.08343 1.62894 1.19789 0.80558 0.94916 1.47995 0.87611 1.25315 1.00766 0.94851 0.96770 1.69614 1.33991 1.00452 1.49596 0.85756 0.81304 0.79217 0.77843 1.19092 1.20583 1.20578 1.19051 0.94134 0.90286 1.20831 1.18108 0.75793 0.86148 0.74036 1.93136 1.58209 1.68454 1.96296 1.93241 1.75208 1.96044 1.51049 1.93243 1.75291 1.96062 1.50950 1.19799 0.92346 0.96088 0.99121 0.90506 0.91572 0.91566 0.92180 0.92185 0.84868 0.84370 0.74666 0.90130 0.90141 0.77144 0.91649 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.40 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.41 10.14 -19.76 -0.20 -3.61 16 4 C 0.06 0.66 6.69 -39.24 -0.26 0.40 16 5 C -0.12 -1.28 9.03 -39.46 -0.36 -1.63 16 6 C -0.17 -2.00 9.31 -39.40 -0.37 -2.37 16 7 C 0.25 3.62 6.55 -83.69 -0.55 3.07 16 8 N -0.72 -12.18 5.46 -59.76 -0.33 -12.50 16 9 C 0.11 1.84 5.39 -5.20 -0.03 1.81 16 10 C 0.43 9.70 7.85 -10.99 -0.09 9.62 16 11 O -0.59 -15.59 15.24 5.55 0.08 -15.51 16 12 N -0.55 -13.30 5.29 -10.96 -0.06 -13.36 16 13 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 14 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.90 -23.45 13.05 55.50 0.72 -22.72 16 17 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 21 C -0.24 -3.34 5.38 -104.44 -0.56 -3.91 16 22 C 0.51 7.68 2.80 36.01 0.10 7.78 16 23 F -0.18 -2.45 15.97 2.25 0.04 -2.41 16 24 F -0.17 -2.83 16.24 2.25 0.04 -2.80 16 25 F -0.17 -2.83 16.24 2.25 0.04 -2.80 16 26 C -0.05 -0.68 9.36 -39.46 -0.37 -1.05 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 32 H 0.13 1.04 6.29 -52.49 -0.33 0.71 16 33 H 0.14 1.45 6.73 -52.49 -0.35 1.10 16 34 H 0.41 7.90 4.86 -40.82 -0.20 7.70 16 35 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 36 H 0.08 1.18 7.95 -51.92 -0.41 0.76 16 37 H 0.39 8.96 7.90 -40.82 -0.32 8.64 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.14 1.60 7.15 -52.49 -0.38 1.22 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -30.43 345.84 -5.59 -36.03 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -3.98 Total: 12.94 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.13 Total: 6.11 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.34 Total: -48.58 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.12 Total: -19.12 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.11 Total: -8.01 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.43 -5.59 -36.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175123629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.540 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds