Wall clock time and date at job start Tue Mar 31 2020 16:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36007 * 116.99577 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98217 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.01896 * 179.97438 * 5 4 3 7 7 C 1.38883 * 119.97644 * 359.97438 * 6 5 4 8 8 N 1.39950 * 120.01312 * 180.02562 * 7 6 5 9 9 C 1.46495 * 120.00201 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47234 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99844 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99814 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99714 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00017 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00137 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99741 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47029 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46746 * 119.99946 * 17 15 13 20 20 H 1.48497 * 109.47058 * 239.99725 * 17 15 13 21 21 C 1.38832 * 119.96873 * 0.02562 * 7 6 5 22 22 C 1.50700 * 120.01385 * 180.02562 * 21 7 6 23 23 F 1.39899 * 109.47072 * 180.02562 * 22 21 7 24 24 F 1.39895 * 109.47285 * 300.00001 * 22 21 7 25 25 F 1.39900 * 109.46747 * 60.00056 * 22 21 7 26 26 C 1.38136 * 119.97713 * 359.74134 * 21 7 6 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 1.07994 * 119.99207 * 0.02562 * 5 4 3 33 33 H 1.08000 * 120.01269 * 180.02562 * 6 5 4 34 34 H 0.97001 * 119.99395 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.46960 * 300.00300 * 9 8 7 36 36 H 1.09009 * 109.46777 * 59.99734 * 9 8 7 37 37 H 0.96994 * 120.00314 * 0.02562 * 12 10 9 38 38 H 0.97009 * 119.99683 * 180.02562 * 16 15 13 39 39 H 1.07999 * 119.99381 * 180.25296 * 26 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1993 0.4251 0.0005 6 6 5.5684 0.6052 0.0005 7 6 6.0995 1.8884 0.0000 8 7 7.4870 2.0718 -0.0005 9 6 8.3794 0.9100 -0.0011 10 6 9.8122 1.3772 -0.0022 11 8 10.0631 2.5639 -0.0020 12 7 10.8146 0.4764 -0.0024 13 6 12.1180 0.9014 -0.0029 14 1 12.3415 1.9580 -0.0027 15 6 13.1516 -0.0273 -0.0036 16 7 12.8797 -1.3130 -0.0033 17 14 14.9276 0.5518 -0.0050 18 1 14.9642 2.0363 -0.0045 19 1 15.6161 0.0398 1.2071 20 1 15.6143 0.0396 -1.2179 21 6 5.2535 2.9892 0.0001 22 6 5.8287 4.3821 -0.0011 23 9 4.7876 5.3166 -0.0002 24 9 6.6171 4.5620 1.1405 25 9 6.6154 4.5607 -1.1440 26 6 3.8842 2.8072 -0.0048 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.7861 -0.5726 -0.0003 33 1 6.2259 -0.2516 0.0001 34 1 7.8576 2.9682 -0.0012 35 1 8.1935 0.3087 0.8888 36 1 8.1928 0.3090 -0.8912 37 1 10.6139 -0.4726 -0.0021 38 1 13.6013 -1.9613 -0.0034 39 1 3.2258 3.6633 -0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175123629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:02 Heat of formation + Delta-G solvation = -221.192176 kcal Electronic energy + Delta-G solvation = -28256.000766 eV Core-core repulsion = 23555.002974 eV Total energy + Delta-G solvation = -4700.997792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.24870 -48.75475 -48.70187 -41.30137 -40.34460 -39.05710 -36.34854 -35.64400 -33.40301 -32.95886 -32.55236 -30.32948 -28.25296 -27.02390 -26.20362 -24.47492 -23.17249 -22.33930 -21.22475 -20.15428 -19.89674 -19.57707 -19.54444 -18.57331 -17.67963 -17.19547 -17.09898 -16.93180 -16.51478 -16.39678 -16.05581 -15.62308 -15.58786 -15.50517 -15.13616 -15.05989 -14.86586 -14.81093 -14.64997 -14.35137 -13.99525 -13.95624 -13.83690 -13.58228 -13.47150 -13.09183 -13.06848 -12.89255 -12.56579 -12.46244 -12.14192 -11.75711 -11.75601 -11.59399 -10.60673 -10.56664 -10.30733 -10.09977 -8.52993 -8.29646 -6.02040 -0.07832 0.48602 1.33372 1.41474 1.54659 1.60218 1.90909 2.08988 2.29213 2.33745 2.51314 2.80507 3.03746 3.11488 3.14497 3.36802 3.72747 3.97682 4.05756 4.17124 4.18250 4.26569 4.36377 4.39895 4.46551 4.48701 4.68143 4.76988 4.96454 5.03682 5.05185 5.22024 5.35154 5.37138 5.43393 5.85548 6.07741 6.43153 6.49467 6.54573 7.04202 7.43760 7.97229 8.63945 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002797 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.612770 B =10008.465896 C =11578.679757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.063 3.937 5 C -0.111 4.111 6 C -0.161 4.161 7 C 0.226 3.774 8 N -0.736 5.736 9 C 0.124 3.876 10 C 0.426 3.574 11 O -0.632 6.632 12 N -0.557 5.557 13 C -0.337 4.337 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.912 5.912 17 Si 0.992 3.008 18 H -0.276 1.276 19 H -0.269 1.269 20 H -0.269 1.269 21 C -0.244 4.244 22 C 0.510 3.490 23 F -0.174 7.174 24 F -0.186 7.186 25 F -0.186 7.186 26 C -0.066 4.066 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.399 0.601 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.402 0.598 38 H 0.280 0.720 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.369 -2.300 -0.001 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.017 3.983 5 C -0.130 4.130 6 C -0.183 4.183 7 C 0.120 3.880 8 N -0.367 5.367 9 C -0.003 4.003 10 C 0.213 3.787 11 O -0.521 6.521 12 N -0.193 5.193 13 C -0.466 4.466 14 H 0.097 0.903 15 C -0.208 4.208 16 N -0.552 5.552 17 Si 0.816 3.184 18 H -0.200 1.200 19 H -0.194 1.194 20 H -0.194 1.194 21 C -0.250 4.250 22 C 0.456 3.544 23 F -0.155 7.155 24 F -0.167 7.167 25 F -0.167 7.167 26 C -0.085 4.085 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.236 0.764 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.070 -1.716 -0.002 23.134 hybrid contribution 1.431 0.497 -0.001 1.515 sum -21.639 -1.219 -0.003 21.673 Atomic orbital electron populations 1.21800 0.91865 1.04036 1.03032 1.23078 0.96689 0.80833 1.02512 1.86063 1.17775 1.31152 1.89658 1.18496 0.83382 0.93081 1.03327 1.21534 0.92616 0.99512 0.99296 1.20792 0.95888 0.94501 1.07118 1.17649 0.82579 0.93928 0.93876 1.44784 1.01989 1.09364 1.80523 1.20986 0.85727 0.88732 1.04863 1.20693 0.88215 0.86377 0.83379 1.90511 1.85115 1.18515 1.57912 1.41793 1.05086 1.08871 1.63582 1.19691 0.82493 0.94081 1.50380 0.90328 1.26022 1.03982 0.94918 0.95847 1.69655 1.35283 1.00958 1.49352 0.84886 0.76920 0.78169 0.78469 1.20026 1.19447 1.19436 1.19059 0.94797 0.89450 1.21733 1.18318 0.75643 0.87089 0.73331 1.93139 1.57729 1.68396 1.96222 1.93211 1.75676 1.96180 1.51641 1.93213 1.75757 1.96197 1.51541 1.19902 0.91745 0.97187 0.99661 0.88298 0.92037 0.92030 0.90835 0.90838 0.81441 0.82376 0.76354 0.87365 0.87376 0.76351 0.91012 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.04 0.49 5.46 71.98 0.39 0.88 16 3 O -0.33 -6.26 10.14 -93.63 -0.95 -7.21 16 4 C 0.06 1.32 6.69 22.49 0.15 1.48 16 5 C -0.11 -1.95 9.03 22.35 0.20 -1.74 16 6 C -0.16 -3.41 9.31 22.39 0.21 -3.20 16 7 C 0.23 6.33 6.55 38.14 0.25 6.58 16 8 N -0.74 -24.70 5.46 -342.98 -1.87 -26.57 16 9 C 0.12 4.01 5.39 85.63 0.46 4.47 16 10 C 0.43 19.55 7.85 87.66 0.69 20.24 16 11 O -0.63 -34.62 15.24 -3.07 -0.05 -34.66 16 12 N -0.56 -27.26 5.29 -306.98 -1.62 -28.88 16 13 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 14 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 15 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 16 N -0.91 -47.15 13.05 21.66 0.28 -46.86 16 17 Si 0.99 41.85 29.55 68.60 2.03 43.87 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 C -0.24 -6.81 5.38 -19.75 -0.11 -6.91 16 22 C 0.51 15.63 2.80 71.24 0.20 15.83 16 23 F -0.17 -4.80 15.97 44.97 0.72 -4.08 16 24 F -0.19 -6.28 16.24 44.97 0.73 -5.54 16 25 F -0.19 -6.27 16.24 44.97 0.73 -5.54 16 26 C -0.07 -1.58 9.36 22.35 0.21 -1.37 16 27 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 31 H 0.07 0.64 7.66 -2.39 -0.02 0.63 16 32 H 0.17 1.76 6.29 -2.91 -0.02 1.75 16 33 H 0.16 2.68 6.73 -2.91 -0.02 2.66 16 34 H 0.40 15.69 4.86 -92.71 -0.45 15.24 16 35 H 0.11 2.90 7.95 -2.39 -0.02 2.88 16 36 H 0.11 2.89 7.95 -2.38 -0.02 2.87 16 37 H 0.40 18.16 7.90 -92.71 -0.73 17.43 16 38 H 0.28 13.50 8.31 -92.70 -0.77 12.73 16 39 H 0.15 3.24 7.15 -2.91 -0.02 3.22 16 Total: -1.00 -67.36 345.84 4.63 -62.73 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.04 Total: 34.71 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 4.68 Total: 18.06 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.21 Total: -102.32 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.00 Total: -41.87 kcal Atomic # 9 Polarization: -17.35 SS G_CDS: 2.18 Total: -15.17 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -67.36 4.63 -62.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175123629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.465 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds