Wall clock time and date at job start Tue Mar 31 2020 16:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46822 * 2 1 4 4 C 1.35502 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.39171 * 119.52591 * 180.02562 * 4 3 2 6 6 C 1.37954 * 119.26437 * 180.02562 * 5 4 3 7 7 C 1.40281 * 118.35660 * 359.97438 * 6 5 4 8 8 C 1.47616 * 120.49995 * 180.02562 * 7 6 5 9 9 O 1.21578 * 119.99936 * 311.23622 * 8 7 6 10 10 N 1.34776 * 120.00153 * 131.23312 * 8 7 6 11 11 C 1.46496 * 120.00042 * 186.17920 * 10 8 7 12 12 C 1.50707 * 109.47101 * 90.00172 * 11 10 8 13 13 H 1.07997 * 119.99612 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00027 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99832 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46735 * 60.00252 * 16 14 12 18 18 H 1.48498 * 109.46864 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47271 * 299.99791 * 16 14 12 20 20 C 1.46499 * 119.99899 * 6.18504 * 10 8 7 21 21 C 1.53001 * 109.47019 * 105.34244 * 20 10 8 22 22 F 1.39896 * 109.47045 * 67.31531 * 21 20 10 23 23 F 1.39903 * 109.46590 * 187.31425 * 21 20 10 24 24 F 1.39899 * 109.47286 * 307.31288 * 21 20 10 25 25 C 1.39529 * 119.00413 * 359.97438 * 7 6 5 26 26 N 1.31664 * 120.62668 * 0.02562 * 25 7 6 27 27 H 1.08997 * 109.47528 * 59.99389 * 1 2 3 28 28 H 1.09004 * 109.47486 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47187 * 299.99795 * 1 2 3 30 30 H 1.08995 * 109.47186 * 240.00365 * 2 1 3 31 31 H 1.08998 * 109.47333 * 120.00095 * 2 1 3 32 32 H 1.08003 * 120.36471 * 359.97438 * 5 4 3 33 33 H 1.07999 * 120.82024 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47913 * 210.00349 * 11 10 8 35 35 H 1.08999 * 109.47166 * 330.00397 * 11 10 8 36 36 H 0.97004 * 119.99631 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.46620 * 225.34126 * 20 10 8 38 38 H 1.09004 * 109.47276 * 345.33856 * 20 10 8 39 39 H 1.07999 * 119.68387 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8709 2.8152 0.0011 6 6 5.2393 2.9898 0.0011 7 6 6.0564 1.8495 0.0011 8 6 7.5267 1.9813 0.0017 9 8 8.0704 2.7271 -0.7897 10 7 8.2663 1.2750 0.8795 11 6 9.7100 1.5051 0.9729 12 6 9.9824 2.5798 1.9937 13 1 9.1622 3.0445 2.5205 14 6 11.2788 2.9697 2.2551 15 7 12.2777 2.4042 1.6132 16 14 11.6163 4.3023 3.5199 17 1 11.0975 3.8716 4.8431 18 1 13.0798 4.5355 3.6147 19 1 10.9401 5.5585 3.1080 20 6 7.6264 0.2771 1.7402 21 6 7.9599 -1.1260 1.2293 22 9 9.3254 -1.3740 1.4052 23 9 7.2181 -2.0716 1.9456 24 9 7.6409 -1.2155 -0.1299 25 6 5.4585 0.5888 0.0016 26 7 4.1474 0.4682 0.0016 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.2113 3.6705 0.0007 33 1 5.6709 3.9798 0.0011 34 1 10.2063 0.5829 1.2750 35 1 10.0911 1.8214 0.0019 36 1 13.1898 2.6783 1.7974 37 1 7.9930 0.3889 2.7607 38 1 6.5462 0.4224 1.7243 39 1 6.0771 -0.2965 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177612444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:21 Heat of formation + Delta-G solvation = -178.650174 kcal Electronic energy + Delta-G solvation = -29399.718045 eV Core-core repulsion = 24700.565013 eV Total energy + Delta-G solvation = -4699.153032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.99815 -47.55090 -47.36767 -40.93470 -39.34809 -37.77702 -35.48837 -32.94862 -32.65578 -32.23099 -30.42488 -29.32861 -27.15245 -24.61559 -24.33211 -23.36850 -22.77389 -22.21454 -19.68355 -18.75651 -18.41736 -18.37586 -17.73866 -17.04995 -16.79225 -16.48808 -16.18907 -15.49099 -15.17118 -14.72146 -14.41216 -14.27884 -14.13434 -14.04721 -14.00854 -13.86034 -13.66690 -13.56040 -13.49420 -12.97525 -12.85095 -12.80780 -12.48596 -12.22580 -12.09602 -11.94209 -11.80464 -11.31526 -11.04669 -10.95111 -10.65605 -10.31592 -10.05519 -9.95457 -9.84781 -9.29618 -8.59801 -8.51323 -8.11979 -6.13905 -4.20333 0.80153 1.08750 2.71853 2.79728 3.12647 3.26677 3.31306 3.31964 3.37178 3.67125 3.98118 4.08961 4.17601 4.35432 4.36352 4.70725 4.74866 4.75652 4.77686 4.97046 4.97865 5.08180 5.14757 5.21337 5.41196 5.48657 5.52128 5.55376 5.67647 5.77834 6.01862 6.21585 6.76911 7.03490 7.16481 7.31424 7.61910 7.79586 7.94570 8.07233 8.57961 8.83354 9.44938 10.94451 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.003838 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.603000 B = 7294.072073 C = 8483.617152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.305 6.305 4 C 0.331 3.669 5 C -0.192 4.192 6 C 0.009 3.991 7 C -0.212 4.212 8 C 0.567 3.433 9 O -0.512 6.512 10 N -0.588 5.588 11 C 0.235 3.765 12 C -0.537 4.537 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.061 3.939 21 C 0.430 3.570 22 F -0.167 7.167 23 F -0.184 7.184 24 F -0.179 7.179 25 C 0.146 3.854 26 N -0.538 5.538 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.266 0.734 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.169 -6.276 -0.365 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.152 3.848 5 C -0.212 4.212 6 C -0.017 4.017 7 C -0.218 4.218 8 C 0.353 3.647 9 O -0.387 6.387 10 N -0.319 5.319 11 C 0.117 3.883 12 C -0.575 4.575 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.067 4.067 21 C 0.374 3.626 22 F -0.148 7.148 23 F -0.166 7.166 24 F -0.161 7.161 25 C -0.010 4.010 26 N -0.262 5.262 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.231 -6.518 -0.842 20.323 hybrid contribution 0.740 0.957 0.661 1.378 sum -18.491 -5.561 -0.181 19.310 Atomic orbital electron populations 1.21823 0.93026 1.02909 1.03271 1.22645 0.94693 0.80963 1.02832 1.86193 1.16841 1.30878 1.87328 1.20015 0.84001 0.90083 0.90687 1.21004 0.95459 0.95782 1.08996 1.21470 0.91536 0.99155 0.89544 1.21068 0.95782 0.95251 1.09722 1.17852 0.85221 0.80751 0.80890 1.90802 1.72656 1.37540 1.37670 1.48108 1.11847 1.35910 1.36040 1.19680 0.71145 0.98046 0.99403 1.21315 0.92591 1.21131 1.22507 0.92226 1.24921 0.95887 0.96601 0.96410 1.69923 0.99391 1.42102 1.41302 0.86527 0.77227 0.82079 0.81408 1.20149 1.21100 1.20117 1.22847 1.01905 0.83226 0.98733 1.21559 0.75396 0.90267 0.75396 1.93240 1.31539 1.95155 1.94866 1.93178 1.77049 1.68258 1.78066 1.93009 1.91659 1.96718 1.34692 1.23392 0.89485 0.97241 0.90921 1.67382 1.06109 1.32719 1.19972 0.91681 0.90276 0.91654 0.91435 0.91362 0.83470 0.83029 0.93279 0.92903 0.92431 0.85360 0.86588 0.81118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.59 6.02 37.16 0.22 0.82 16 3 O -0.31 -3.56 10.10 -18.20 -0.18 -3.74 16 4 C 0.33 4.30 7.49 -16.96 -0.13 4.17 16 5 C -0.19 -2.31 10.02 -39.34 -0.39 -2.70 16 6 C 0.01 0.12 9.87 -38.92 -0.38 -0.27 16 7 C -0.21 -3.40 5.05 -104.82 -0.53 -3.93 16 8 C 0.57 11.40 7.25 -12.43 -0.09 11.31 16 9 O -0.51 -12.32 16.59 5.30 0.09 -12.23 16 10 N -0.59 -11.78 2.29 -176.26 -0.40 -12.18 16 11 C 0.23 5.83 5.11 -5.19 -0.03 5.80 16 12 C -0.54 -14.37 9.39 -34.44 -0.32 -14.69 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 16 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.06 0.94 5.11 -4.04 -0.02 0.92 16 21 C 0.43 6.58 2.96 37.16 0.11 6.69 16 22 F -0.17 -2.95 15.27 2.25 0.03 -2.92 16 23 F -0.18 -2.49 17.32 2.25 0.04 -2.45 16 24 F -0.18 -2.81 14.41 2.25 0.03 -2.78 16 25 C 0.15 2.13 8.53 -17.14 -0.15 1.98 16 26 N -0.54 -7.47 9.18 -12.96 -0.12 -7.59 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.05 1.24 6.09 -51.93 -0.32 0.92 16 35 H 0.05 1.49 7.34 -51.93 -0.38 1.11 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.12 1.54 4.66 -51.93 -0.24 1.29 16 39 H 0.17 2.44 3.52 -52.49 -0.18 2.26 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -31.46 344.45 -5.08 -36.54 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.05 Total: -0.12 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -1.42 Total: 11.16 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.21 Total: -44.61 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.10 Total: -15.97 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 0.11 Total: -8.15 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.46 -5.08 -36.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177612444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.112 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds