Wall clock time and date at job start Tue Mar 31 2020 16:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46822 * 2 1 4 4 C 1.35502 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.39171 * 119.52591 * 180.02562 * 4 3 2 6 6 C 1.37954 * 119.26437 * 180.02562 * 5 4 3 7 7 C 1.40281 * 118.35660 * 359.97438 * 6 5 4 8 8 C 1.47616 * 120.49995 * 180.02562 * 7 6 5 9 9 O 1.21578 * 119.99936 * 311.23622 * 8 7 6 10 10 N 1.34776 * 120.00153 * 131.23312 * 8 7 6 11 11 C 1.46496 * 120.00042 * 186.17920 * 10 8 7 12 12 C 1.50707 * 109.47101 * 90.00172 * 11 10 8 13 13 H 1.07997 * 119.99612 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00027 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99832 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46735 * 60.00252 * 16 14 12 18 18 H 1.48498 * 109.46864 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47271 * 299.99791 * 16 14 12 20 20 C 1.46499 * 119.99899 * 6.18504 * 10 8 7 21 21 C 1.53001 * 109.47019 * 105.34244 * 20 10 8 22 22 F 1.39896 * 109.47045 * 67.31531 * 21 20 10 23 23 F 1.39903 * 109.46590 * 187.31425 * 21 20 10 24 24 F 1.39899 * 109.47286 * 307.31288 * 21 20 10 25 25 C 1.39529 * 119.00413 * 359.97438 * 7 6 5 26 26 N 1.31664 * 120.62668 * 0.02562 * 25 7 6 27 27 H 1.08997 * 109.47528 * 59.99389 * 1 2 3 28 28 H 1.09004 * 109.47486 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47187 * 299.99795 * 1 2 3 30 30 H 1.08995 * 109.47186 * 240.00365 * 2 1 3 31 31 H 1.08998 * 109.47333 * 120.00095 * 2 1 3 32 32 H 1.08003 * 120.36471 * 359.97438 * 5 4 3 33 33 H 1.07999 * 120.82024 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47913 * 210.00349 * 11 10 8 35 35 H 1.08999 * 109.47166 * 330.00397 * 11 10 8 36 36 H 0.97004 * 119.99631 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.46620 * 225.34126 * 20 10 8 38 38 H 1.09004 * 109.47276 * 345.33856 * 20 10 8 39 39 H 1.07999 * 119.68387 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8709 2.8152 0.0011 6 6 5.2393 2.9898 0.0011 7 6 6.0564 1.8495 0.0011 8 6 7.5267 1.9813 0.0017 9 8 8.0704 2.7271 -0.7897 10 7 8.2663 1.2750 0.8795 11 6 9.7100 1.5051 0.9729 12 6 9.9824 2.5798 1.9937 13 1 9.1622 3.0445 2.5205 14 6 11.2788 2.9697 2.2551 15 7 12.2777 2.4042 1.6132 16 14 11.6163 4.3023 3.5199 17 1 11.0975 3.8716 4.8431 18 1 13.0798 4.5355 3.6147 19 1 10.9401 5.5585 3.1080 20 6 7.6264 0.2771 1.7402 21 6 7.9599 -1.1260 1.2293 22 9 9.3254 -1.3740 1.4052 23 9 7.2181 -2.0716 1.9456 24 9 7.6409 -1.2155 -0.1299 25 6 5.4585 0.5888 0.0016 26 7 4.1474 0.4682 0.0016 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.2113 3.6705 0.0007 33 1 5.6709 3.9798 0.0011 34 1 10.2063 0.5829 1.2750 35 1 10.0911 1.8214 0.0019 36 1 13.1898 2.6783 1.7974 37 1 7.9930 0.3889 2.7607 38 1 6.5462 0.4224 1.7243 39 1 6.0771 -0.2965 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177612444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:20 Heat of formation + Delta-G solvation = -199.272650 kcal Electronic energy + Delta-G solvation = -29400.612303 eV Core-core repulsion = 24700.565013 eV Total energy + Delta-G solvation = -4700.047290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.27747 -48.81907 -48.66837 -42.08111 -40.71690 -38.87977 -37.13768 -34.91295 -33.74020 -33.13107 -31.59787 -30.75630 -28.92004 -25.91132 -25.49293 -24.79527 -24.10879 -23.20988 -21.16136 -19.83513 -19.71018 -19.55416 -19.20385 -18.49850 -18.17433 -17.87871 -17.34664 -17.09439 -16.38496 -16.29899 -15.93701 -15.62084 -15.35035 -15.10002 -15.08566 -15.00900 -14.92325 -14.83918 -14.79938 -14.34763 -14.24538 -13.89528 -13.60698 -13.47940 -13.30033 -13.23377 -13.14543 -12.88017 -12.53767 -12.48826 -12.22672 -11.81773 -11.71954 -11.27798 -11.12442 -10.70717 -10.62346 -9.89550 -9.64951 -8.22494 -6.37103 -0.34204 0.01940 1.34845 1.41214 1.44621 1.51435 1.67423 1.88788 1.93769 2.40670 2.51513 2.70544 2.86904 2.97441 3.09746 3.14056 3.41453 3.64225 3.83024 3.93251 3.94068 4.11609 4.21145 4.24318 4.48155 4.50280 4.58139 4.83462 4.86038 4.98475 5.04026 5.18049 5.18510 5.26987 5.34491 5.72071 6.00258 6.08336 6.28319 6.54379 6.70163 7.01505 7.33640 8.85766 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.003838 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.603000 B = 7294.072073 C = 8483.617152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.305 6.305 4 C 0.331 3.669 5 C -0.177 4.177 6 C 0.008 3.992 7 C -0.229 4.229 8 C 0.566 3.434 9 O -0.564 6.564 10 N -0.593 5.593 11 C 0.251 3.749 12 C -0.548 4.548 13 H 0.064 0.936 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.968 3.032 17 H -0.259 1.259 18 H -0.283 1.283 19 H -0.275 1.275 20 C 0.061 3.939 21 C 0.436 3.564 22 F -0.183 7.183 23 F -0.168 7.168 24 F -0.182 7.182 25 C 0.152 3.848 26 N -0.542 5.542 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.180 0.820 33 H 0.158 0.842 34 H 0.042 0.958 35 H 0.008 0.992 36 H 0.268 0.732 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.934 -6.075 1.011 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.212 6.212 4 C 0.152 3.848 5 C -0.197 4.197 6 C -0.018 4.018 7 C -0.235 4.235 8 C 0.355 3.645 9 O -0.442 6.442 10 N -0.322 5.322 11 C 0.131 3.869 12 C -0.586 4.586 13 H 0.082 0.918 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.065 4.065 21 C 0.380 3.620 22 F -0.164 7.164 23 F -0.149 7.149 24 F -0.163 7.163 25 C -0.005 4.005 26 N -0.266 5.266 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.197 0.803 33 H 0.175 0.825 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -22.052 -6.356 0.558 22.957 hybrid contribution 1.447 0.819 0.185 1.672 sum -20.606 -5.537 0.743 21.350 Atomic orbital electron populations 1.21836 0.90792 1.04293 1.03497 1.22906 0.96451 0.79801 1.02696 1.86222 1.15798 1.32387 1.86753 1.20300 0.84590 0.90269 0.89622 1.21257 0.94839 0.96548 1.07058 1.21593 0.92187 0.98746 0.89233 1.20724 0.92985 0.96874 1.12892 1.18454 0.86915 0.79466 0.79666 1.90762 1.74048 1.39785 1.39646 1.47942 1.10361 1.37045 1.36899 1.19133 0.74036 0.97181 0.96539 1.21639 0.92901 1.21473 1.22602 0.91814 1.25838 0.95717 0.98855 0.98444 1.70055 0.99805 1.43725 1.42943 0.85455 0.77062 0.78900 0.79336 1.18380 1.20844 1.19992 1.23086 1.03182 0.81941 0.98312 1.21406 0.74766 0.90448 0.75398 1.93211 1.33021 1.95255 1.94958 1.93210 1.76477 1.67617 1.77640 1.93011 1.91600 1.96746 1.34961 1.23270 0.89826 0.96530 0.90836 1.67416 1.05553 1.33260 1.20323 0.91511 0.88337 0.91339 0.91752 0.91336 0.80305 0.82463 0.93987 0.97400 0.92350 0.84167 0.83866 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.06 0.90 6.02 71.98 0.43 1.33 16 3 O -0.30 -6.22 10.10 -88.04 -0.89 -7.11 16 4 C 0.33 7.73 7.49 84.83 0.64 8.36 16 5 C -0.18 -3.75 10.02 22.43 0.22 -3.52 16 6 C 0.01 0.20 9.87 22.70 0.22 0.43 16 7 C -0.23 -7.18 5.05 -19.99 -0.10 -7.28 16 8 C 0.57 23.32 7.25 86.72 0.63 23.95 16 9 O -0.56 -28.40 16.59 -3.96 -0.07 -28.47 16 10 N -0.59 -24.24 2.29 -829.82 -1.90 -26.15 16 11 C 0.25 12.96 5.11 85.64 0.44 13.40 16 12 C -0.55 -29.83 9.39 25.60 0.24 -29.59 16 13 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 14 C 0.01 0.62 5.46 84.65 0.46 1.08 16 15 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 16 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 C 0.06 1.84 5.11 86.38 0.44 2.28 16 21 C 0.44 13.11 2.96 71.98 0.21 13.32 16 22 F -0.18 -6.56 15.27 44.97 0.69 -5.87 16 23 F -0.17 -4.28 17.32 44.97 0.78 -3.50 16 24 F -0.18 -5.67 14.41 44.97 0.65 -5.03 16 25 C 0.15 4.23 8.53 85.03 0.73 4.96 16 26 N -0.54 -13.91 9.18 -307.81 -2.82 -16.73 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 31 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 32 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 33 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.04 2.21 6.09 -2.39 -0.01 2.20 16 35 H 0.01 0.47 7.34 -2.39 -0.02 0.46 16 36 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.14 3.93 8.14 -2.38 -0.02 3.91 16 38 H 0.14 3.57 4.66 -2.39 -0.01 3.56 16 39 H 0.17 4.71 3.52 -2.91 -0.01 4.70 16 Total: -1.00 -69.62 344.45 5.16 -64.46 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.11 Total: 9.69 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 5.30 Total: 27.97 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -4.44 Total: -97.21 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.96 Total: -35.57 kcal Atomic # 9 Polarization: -16.52 SS G_CDS: 2.11 Total: -14.40 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -69.62 5.16 -64.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177612444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.810 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds