Wall clock time and date at job start Tue Mar 31 2020 16:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99676 * 2 1 4 4 C 1.38728 * 120.05533 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94781 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05311 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94768 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46665 * 339.99857 * 7 6 5 9 9 N 1.46899 * 109.47365 * 219.99705 * 7 6 5 10 10 C 1.46903 * 110.99807 * 154.99790 * 9 7 6 11 11 C 1.50705 * 109.46848 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99984 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99593 * 180.02562 * 11 10 9 14 14 C 1.37093 * 119.99670 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99958 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00062 * 179.97438 * 14 13 11 17 17 N 1.31407 * 120.00282 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00004 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46777 * 89.99942 * 18 16 14 20 20 H 1.48494 * 109.47006 * 209.99975 * 18 16 14 21 21 H 1.48491 * 109.46986 * 330.00255 * 18 16 14 22 22 C 1.53006 * 109.47184 * 99.99468 * 7 6 5 23 23 F 1.39895 * 109.46931 * 180.02562 * 22 7 6 24 24 F 1.39897 * 109.47129 * 300.00544 * 22 7 6 25 25 F 1.39900 * 109.46764 * 60.00523 * 22 7 6 26 26 C 1.38267 * 120.11158 * 0.26824 * 6 5 4 27 27 C 1.38146 * 120.05450 * 359.45427 * 26 6 5 28 28 H 1.08998 * 109.47442 * 299.99524 * 1 2 3 29 29 H 1.09001 * 109.47771 * 59.99815 * 1 2 3 30 30 H 1.09001 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.02843 * 359.95925 * 4 3 2 32 32 H 1.07998 * 119.97707 * 180.02562 * 5 4 3 33 33 H 1.00902 * 111.00121 * 278.95192 * 9 7 6 34 34 H 1.09001 * 109.47143 * 300.00154 * 10 9 7 35 35 H 1.08998 * 109.47112 * 60.00049 * 10 9 7 36 36 H 0.97000 * 119.99949 * 359.97438 * 13 11 10 37 37 H 0.97001 * 120.00656 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.97143 * 179.70751 * 26 6 5 39 39 H 1.07997 * 120.03051 * 180.27694 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2850 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0005 8 1 5.0110 4.9041 0.3514 9 7 3.2623 5.9368 0.8892 10 6 4.1498 6.9969 1.3860 11 6 3.3744 7.9166 2.2937 12 8 2.1982 7.7098 2.5055 13 7 3.9877 8.9697 2.8694 14 6 3.2825 9.8061 3.6955 15 1 2.2353 9.6214 3.8847 16 6 3.9149 10.8915 4.2894 17 7 3.2388 11.6935 5.0809 18 14 5.7263 11.2105 3.9627 19 1 5.8673 12.0938 2.7773 20 1 6.3341 11.8697 5.1464 21 1 6.4172 9.9217 3.7047 22 6 3.9948 5.5865 -1.4213 23 9 4.6303 6.8328 -1.4214 24 9 4.6837 4.7121 -2.2686 25 9 2.6789 5.7336 -1.8730 26 6 1.9209 3.6049 0.0051 27 6 1.2914 2.3752 -0.0002 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0208 0.3801 0.0016 32 1 5.1344 2.5752 0.0000 33 1 2.4555 6.3280 0.4265 34 1 4.9746 6.5498 1.9409 35 1 4.5443 7.5649 0.5436 36 1 4.9283 9.1353 2.6997 37 1 3.6804 12.4510 5.4958 38 1 1.3340 4.5115 0.0094 39 1 0.2128 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183419743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:11 Heat of formation + Delta-G solvation = -187.346334 kcal Electronic energy + Delta-G solvation = -28621.883405 eV Core-core repulsion = 23922.353279 eV Total energy + Delta-G solvation = -4699.530126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.22829 -47.73939 -47.68297 -40.38903 -38.75930 -38.02044 -35.81688 -33.98993 -31.77204 -31.33520 -31.26178 -28.64773 -27.22308 -26.30808 -24.01985 -23.56659 -22.48110 -21.22281 -19.51903 -18.79794 -18.56407 -18.41157 -18.32251 -18.04235 -16.47377 -16.37018 -15.97895 -15.51648 -14.98614 -14.90694 -14.68766 -14.65741 -14.34535 -14.23787 -14.11313 -13.91020 -13.82206 -13.80329 -13.50815 -13.34444 -13.14057 -12.95193 -12.61366 -12.32546 -12.23200 -12.11004 -11.91112 -11.71978 -11.23213 -11.18826 -10.98438 -10.62208 -10.00988 -9.61756 -9.16859 -8.87484 -8.48901 -8.35750 -8.22506 -6.34513 -3.86399 1.08074 1.20983 2.62681 3.00662 3.00971 3.05128 3.13508 3.40938 3.54081 3.65948 3.81182 3.88218 4.07405 4.16754 4.56070 4.60298 4.67611 4.72648 4.80585 4.88020 4.94007 5.14855 5.17774 5.19836 5.28153 5.47092 5.48181 5.65292 5.80331 5.85066 5.98163 6.16793 6.33142 6.50800 6.63636 7.08568 7.13779 7.52782 8.09234 8.54370 8.90304 9.37580 9.75675 10.78318 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.002969 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.049750 B = 9427.334513 C =10355.349077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.135 3.865 4 C -0.156 4.156 5 C -0.056 4.056 6 C -0.126 4.126 7 C 0.100 3.900 8 H 0.129 0.871 9 N -0.639 5.639 10 C 0.030 3.970 11 C 0.451 3.549 12 O -0.564 6.564 13 N -0.586 5.586 14 C -0.306 4.306 15 H 0.120 0.880 16 C 0.042 3.958 17 N -0.879 5.879 18 Si 0.879 3.121 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.269 1.269 22 C 0.415 3.585 23 F -0.182 7.182 24 F -0.182 7.182 25 F -0.180 7.180 26 C -0.035 4.035 27 C -0.210 4.210 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.361 0.639 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.371 0.629 37 H 0.274 0.726 38 H 0.132 0.868 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -20.186 -13.960 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.090 3.910 4 C -0.175 4.175 5 C -0.074 4.074 6 C -0.127 4.127 7 C -0.013 4.013 8 H 0.146 0.854 9 N -0.271 5.271 10 C -0.102 4.102 11 C 0.236 3.764 12 O -0.446 6.446 13 N -0.226 5.226 14 C -0.435 4.435 15 H 0.138 0.862 16 C -0.161 4.161 17 N -0.519 5.519 18 Si 0.706 3.294 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.194 1.194 22 C 0.358 3.642 23 F -0.164 7.164 24 F -0.164 7.164 25 F -0.161 7.161 26 C -0.053 4.053 27 C -0.228 4.228 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.184 0.816 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.204 0.796 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.007 -20.662 -13.115 24.555 hybrid contribution 1.294 1.302 -1.123 2.152 sum 3.301 -19.360 -14.237 24.257 Atomic orbital electron populations 1.23080 0.78224 1.03927 1.01669 1.86057 1.21562 1.27013 1.88558 1.19105 0.92427 0.84138 0.95373 1.20309 0.91329 0.98394 1.07444 1.20759 0.99776 0.90673 0.96204 1.19115 0.93946 0.92183 1.07471 1.21749 1.02060 0.92857 0.84660 0.85365 1.60254 1.08939 1.20362 1.37510 1.22084 0.96110 0.92914 0.99085 1.19469 0.88332 0.83273 0.85300 1.90576 1.16025 1.73450 1.64557 1.42166 1.11193 1.25405 1.43788 1.19426 0.97691 1.04665 1.21678 0.86206 1.25044 0.98446 0.96046 0.96545 1.69616 1.36547 1.15700 1.30023 0.86673 0.84814 0.78904 0.79034 1.19580 1.20117 1.19406 1.22206 0.73763 0.76356 0.91829 1.93169 1.82280 1.44058 1.96845 1.93173 1.79752 1.69149 1.74298 1.93169 1.36446 1.95679 1.90814 1.20821 0.93687 0.97562 0.93217 1.21232 1.00275 0.92056 1.09277 0.92349 0.92537 0.88267 0.84963 0.85011 0.81612 0.88589 0.91870 0.79592 0.91538 0.85030 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.23 10.50 -19.44 -0.20 -3.43 16 3 C 0.13 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.16 -1.59 9.99 -39.43 -0.39 -1.98 16 5 C -0.06 -0.55 9.66 -39.60 -0.38 -0.94 16 6 C -0.13 -1.45 4.63 -104.60 -0.48 -1.93 16 7 C 0.10 1.16 2.34 -68.86 -0.16 0.99 16 8 H 0.13 1.20 7.66 -51.93 -0.40 0.81 16 9 N -0.64 -9.36 5.31 -109.21 -0.58 -9.95 16 10 C 0.03 0.48 5.87 -4.97 -0.03 0.45 16 11 C 0.45 9.95 7.82 -10.98 -0.09 9.87 16 12 O -0.56 -14.75 15.78 5.55 0.09 -14.66 16 13 N -0.59 -13.70 5.09 -10.96 -0.06 -13.75 16 14 C -0.31 -8.55 10.16 -14.94 -0.15 -8.70 16 15 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 16 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 17 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 18 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 22 C 0.42 5.01 2.75 37.16 0.10 5.11 16 23 F -0.18 -2.35 15.04 2.25 0.03 -2.32 16 24 F -0.18 -2.14 17.02 2.25 0.04 -2.10 16 25 F -0.18 -2.33 15.57 2.25 0.04 -2.29 16 26 C -0.03 -0.41 8.57 -39.60 -0.34 -0.75 16 27 C -0.21 -2.28 9.04 -39.43 -0.36 -2.63 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 0.98 8.03 -52.49 -0.42 0.56 16 33 H 0.36 5.60 6.93 -39.29 -0.27 5.33 16 34 H 0.10 1.29 8.06 -51.93 -0.42 0.87 16 35 H 0.06 0.90 6.03 -51.93 -0.31 0.59 16 36 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.13 1.60 7.12 -52.49 -0.37 1.22 16 39 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -33.01 342.67 -5.03 -38.04 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -3.96 Total: 12.66 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.65 Total: 2.92 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.14 Total: -48.39 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.12 Total: -18.09 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.11 Total: -6.71 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.01 -5.03 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183419743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.302 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds