Wall clock time and date at job start Tue Mar 31 2020 16:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99676 * 2 1 4 4 C 1.38728 * 120.05533 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94781 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05311 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94768 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46665 * 339.99857 * 7 6 5 9 9 N 1.46899 * 109.47365 * 219.99705 * 7 6 5 10 10 C 1.46903 * 110.99807 * 154.99790 * 9 7 6 11 11 C 1.50705 * 109.46848 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99984 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99593 * 180.02562 * 11 10 9 14 14 C 1.37093 * 119.99670 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99958 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00062 * 179.97438 * 14 13 11 17 17 N 1.31407 * 120.00282 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00004 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46777 * 89.99942 * 18 16 14 20 20 H 1.48494 * 109.47006 * 209.99975 * 18 16 14 21 21 H 1.48491 * 109.46986 * 330.00255 * 18 16 14 22 22 C 1.53006 * 109.47184 * 99.99468 * 7 6 5 23 23 F 1.39895 * 109.46931 * 180.02562 * 22 7 6 24 24 F 1.39897 * 109.47129 * 300.00544 * 22 7 6 25 25 F 1.39900 * 109.46764 * 60.00523 * 22 7 6 26 26 C 1.38267 * 120.11158 * 0.26824 * 6 5 4 27 27 C 1.38146 * 120.05450 * 359.45427 * 26 6 5 28 28 H 1.08998 * 109.47442 * 299.99524 * 1 2 3 29 29 H 1.09001 * 109.47771 * 59.99815 * 1 2 3 30 30 H 1.09001 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.02843 * 359.95925 * 4 3 2 32 32 H 1.07998 * 119.97707 * 180.02562 * 5 4 3 33 33 H 1.00902 * 111.00121 * 278.95192 * 9 7 6 34 34 H 1.09001 * 109.47143 * 300.00154 * 10 9 7 35 35 H 1.08998 * 109.47112 * 60.00049 * 10 9 7 36 36 H 0.97000 * 119.99949 * 359.97438 * 13 11 10 37 37 H 0.97001 * 120.00656 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.97143 * 179.70751 * 26 6 5 39 39 H 1.07997 * 120.03051 * 180.27694 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2850 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0005 8 1 5.0110 4.9041 0.3514 9 7 3.2623 5.9368 0.8892 10 6 4.1498 6.9969 1.3860 11 6 3.3744 7.9166 2.2937 12 8 2.1982 7.7098 2.5055 13 7 3.9877 8.9697 2.8694 14 6 3.2825 9.8061 3.6955 15 1 2.2353 9.6214 3.8847 16 6 3.9149 10.8915 4.2894 17 7 3.2388 11.6935 5.0809 18 14 5.7263 11.2105 3.9627 19 1 5.8673 12.0938 2.7773 20 1 6.3341 11.8697 5.1464 21 1 6.4172 9.9217 3.7047 22 6 3.9948 5.5865 -1.4213 23 9 4.6303 6.8328 -1.4214 24 9 4.6837 4.7121 -2.2686 25 9 2.6789 5.7336 -1.8730 26 6 1.9209 3.6049 0.0051 27 6 1.2914 2.3752 -0.0002 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0208 0.3801 0.0016 32 1 5.1344 2.5752 0.0000 33 1 2.4555 6.3280 0.4265 34 1 4.9746 6.5498 1.9409 35 1 4.5443 7.5649 0.5436 36 1 4.9283 9.1353 2.6997 37 1 3.6804 12.4510 5.4958 38 1 1.3340 4.5115 0.0094 39 1 0.2128 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183419743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:10 Heat of formation + Delta-G solvation = -211.565801 kcal Electronic energy + Delta-G solvation = -28622.933640 eV Core-core repulsion = 23922.353279 eV Total energy + Delta-G solvation = -4700.580361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.17816 -48.70655 -48.62128 -41.15794 -40.36864 -38.99316 -36.92265 -35.93061 -33.77230 -32.37780 -32.05766 -29.56491 -28.03222 -27.68056 -25.61997 -24.48544 -23.31803 -22.07868 -21.33580 -20.39416 -19.60587 -19.49314 -19.11061 -19.07427 -17.83650 -17.31492 -16.97224 -16.64052 -16.46423 -16.11385 -15.81620 -15.60949 -15.42963 -15.31477 -15.08556 -15.03826 -14.82619 -14.79618 -14.64484 -14.49940 -14.35028 -14.20966 -13.99252 -13.66986 -13.34571 -13.06453 -12.92663 -12.82465 -12.59278 -12.41153 -11.97914 -11.93028 -11.73249 -11.51937 -10.52428 -10.26111 -9.96270 -9.77952 -9.16958 -8.41315 -6.02647 0.26924 0.40968 1.31386 1.36488 1.45592 1.70757 1.92491 2.23464 2.34311 2.37120 2.61399 2.89735 2.98472 3.07290 3.15113 3.28750 3.74065 3.78779 3.92974 4.05771 4.08355 4.31397 4.37028 4.38762 4.42855 4.48070 4.55977 4.71486 4.74222 5.06916 5.17338 5.34528 5.41730 5.54405 5.66921 5.75681 5.87866 5.95629 6.41164 6.57571 6.86706 7.37686 7.93123 8.76089 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.002969 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.049750 B = 9427.334513 C =10355.349077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.125 3.875 4 C -0.162 4.162 5 C -0.051 4.051 6 C -0.139 4.139 7 C 0.108 3.892 8 H 0.160 0.840 9 N -0.653 5.653 10 C 0.045 3.955 11 C 0.450 3.550 12 O -0.612 6.612 13 N -0.588 5.588 14 C -0.328 4.328 15 H 0.056 0.944 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.963 3.037 19 H -0.258 1.258 20 H -0.276 1.276 21 H -0.227 1.227 22 C 0.417 3.583 23 F -0.186 7.186 24 F -0.178 7.178 25 F -0.189 7.189 26 C -0.054 4.054 27 C -0.219 4.219 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.352 0.648 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.391 0.609 37 H 0.279 0.721 38 H 0.119 0.881 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -21.805 -15.278 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.080 3.920 4 C -0.181 4.181 5 C -0.070 4.070 6 C -0.140 4.140 7 C -0.005 4.005 8 H 0.177 0.823 9 N -0.284 5.284 10 C -0.087 4.087 11 C 0.238 3.762 12 O -0.497 6.497 13 N -0.229 5.229 14 C -0.458 4.458 15 H 0.074 0.926 16 C -0.213 4.213 17 N -0.574 5.574 18 Si 0.783 3.217 19 H -0.183 1.183 20 H -0.201 1.201 21 H -0.151 1.151 22 C 0.360 3.640 23 F -0.168 7.168 24 F -0.159 7.159 25 F -0.171 7.171 26 C -0.072 4.072 27 C -0.238 4.238 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.174 0.826 34 H 0.150 0.850 35 H 0.105 0.895 36 H 0.227 0.773 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.491 -22.316 -14.456 27.150 hybrid contribution 0.017 1.694 -0.737 1.847 sum 5.508 -20.622 -15.193 26.200 Atomic orbital electron populations 1.23329 0.76654 1.05587 1.02074 1.86042 1.23273 1.26711 1.88433 1.19332 0.93065 0.84335 0.95280 1.20641 0.91286 0.99336 1.06827 1.21072 1.01198 0.89819 0.94866 1.19213 0.93786 0.92710 1.08298 1.21818 1.03207 0.91771 0.83655 0.82256 1.60227 1.09029 1.20294 1.38880 1.22031 0.95716 0.92319 0.98629 1.20728 0.88121 0.82924 0.84426 1.90559 1.18715 1.74491 1.65916 1.41984 1.11899 1.25377 1.43661 1.18995 0.95851 1.06846 1.24071 0.92582 1.26120 1.05006 0.94809 0.95398 1.69799 1.39593 1.16583 1.31435 0.85387 0.76572 0.80641 0.79098 1.18284 1.20080 1.15055 1.22259 0.73347 0.76200 0.92159 1.93154 1.82298 1.44434 1.96867 1.93180 1.79579 1.68955 1.74215 1.93156 1.37239 1.95717 1.90958 1.20874 0.94379 0.97529 0.94423 1.21376 1.01051 0.91929 1.09401 0.92219 0.91866 0.86051 0.83198 0.82024 0.82614 0.84955 0.89516 0.77349 0.91123 0.86270 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.30 10.50 -92.46 -0.97 -7.27 16 3 C 0.13 2.59 6.69 22.51 0.15 2.74 16 4 C -0.16 -2.95 9.99 22.36 0.22 -2.72 16 5 C -0.05 -0.88 9.66 22.25 0.22 -0.66 16 6 C -0.14 -2.93 4.63 -19.85 -0.09 -3.02 16 7 C 0.11 2.20 2.34 44.17 0.10 2.30 16 8 H 0.16 2.22 7.66 -2.39 -0.02 2.20 16 9 N -0.65 -18.09 5.31 -499.44 -2.65 -20.74 16 10 C 0.04 1.27 5.87 85.56 0.50 1.78 16 11 C 0.45 19.71 7.82 87.66 0.69 20.40 16 12 O -0.61 -33.19 15.78 -3.04 -0.05 -33.23 16 13 N -0.59 -27.08 5.09 -306.99 -1.56 -28.64 16 14 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 15 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 16 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 17 N -0.93 -55.99 13.96 21.66 0.30 -55.69 16 18 Si 0.96 38.14 27.74 68.60 1.90 40.04 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 22 C 0.42 9.12 2.75 71.98 0.20 9.31 16 23 F -0.19 -4.28 15.04 44.97 0.68 -3.60 16 24 F -0.18 -3.69 17.02 44.97 0.77 -2.92 16 25 F -0.19 -4.76 15.57 44.97 0.70 -4.06 16 26 C -0.05 -1.26 8.57 22.25 0.19 -1.07 16 27 C -0.22 -4.68 9.04 22.37 0.20 -4.47 16 28 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 29 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.16 1.69 8.03 -2.91 -0.02 1.67 16 33 H 0.35 10.88 6.93 -89.69 -0.62 10.26 16 34 H 0.13 2.90 8.06 -2.39 -0.02 2.88 16 35 H 0.09 2.14 6.03 -2.39 -0.01 2.12 16 36 H 0.39 14.74 5.76 -92.71 -0.53 14.21 16 37 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.12 3.02 7.12 -2.91 -0.02 3.00 16 39 H 0.14 2.51 6.30 -2.91 -0.02 2.49 16 Total: -1.00 -77.08 342.67 3.85 -73.23 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.08 Total: 35.48 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.81 Total: 7.40 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.91 Total: -105.07 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.02 Total: -40.50 kcal Atomic # 9 Polarization: -12.73 SS G_CDS: 2.14 Total: -10.59 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -77.08 3.85 -73.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183419743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.334 kcal (2) G-P(sol) polarization free energy of solvation -77.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds