Wall clock time and date at job start Tue Mar 31 2020 16:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 117.00440 * 2 1 4 4 C 1.38731 * 120.06133 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94780 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05438 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94426 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47294 * 19.99820 * 7 6 5 9 9 N 1.46905 * 109.47206 * 140.00101 * 7 6 5 10 10 C 1.46901 * 110.99870 * 205.00135 * 9 7 6 11 11 C 1.50697 * 109.46943 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.37102 * 120.00095 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99386 * 359.97438 * 14 13 11 16 16 C 1.38941 * 120.00393 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99786 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47191 * 60.00031 * 18 16 14 20 20 H 1.48504 * 109.47312 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47299 * 300.00334 * 18 16 14 22 22 C 1.53002 * 109.47093 * 260.00110 * 7 6 5 23 23 F 1.39899 * 109.46960 * 299.99617 * 22 7 6 24 24 F 1.39896 * 109.47046 * 59.99939 * 22 7 6 25 25 F 1.39902 * 109.47115 * 180.02562 * 22 7 6 26 26 C 1.38265 * 120.11305 * 0.27645 * 6 5 4 27 27 C 1.38141 * 120.05409 * 359.45048 * 26 6 5 28 28 H 1.08999 * 109.47414 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46790 * 300.00649 * 1 2 3 30 30 H 1.08998 * 109.46840 * 59.99988 * 1 2 3 31 31 H 1.08003 * 120.02341 * 359.95240 * 4 3 2 32 32 H 1.08001 * 119.97294 * 180.02562 * 5 4 3 33 33 H 1.00901 * 110.99869 * 81.04847 * 9 7 6 34 34 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 35 35 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 36 36 H 0.96997 * 120.00713 * 359.97438 * 13 11 10 37 37 H 0.97001 * 119.99428 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.96977 * 179.70664 * 26 6 5 39 39 H 1.08004 * 120.03148 * 180.27824 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0118 4.9034 -0.3536 9 7 3.2636 5.9355 -0.8944 10 6 4.1515 6.9948 -1.3918 11 6 3.3767 7.9141 -2.3004 12 8 2.2007 7.7070 -2.5130 13 7 3.9909 8.9659 -2.8775 14 6 3.2861 9.8020 -3.7046 15 1 2.2389 9.6175 -3.8938 16 6 3.9191 10.8866 -4.2992 17 7 5.1934 11.1107 -4.0692 18 14 2.9590 12.0254 -5.4265 19 1 1.8343 12.6354 -4.6728 20 1 3.8567 13.0960 -5.9298 21 1 2.4229 11.2497 -6.5738 22 6 3.9940 5.5881 1.4172 23 9 2.6777 5.7359 1.8675 24 9 4.6821 4.7148 2.2663 25 9 4.6286 6.8349 1.4160 26 6 1.9212 3.6047 0.0031 27 6 1.2916 2.3751 -0.0021 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0208 0.3798 0.0017 32 1 5.1346 2.5749 0.0000 33 1 2.4564 6.3274 -0.4328 34 1 4.5454 7.5640 -0.5498 35 1 4.9767 6.5469 -1.9454 36 1 4.9314 9.1314 -2.7079 37 1 5.6353 11.8677 -4.4846 38 1 1.3344 4.5114 0.0066 39 1 0.2130 2.3202 -0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183419761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:14 Heat of formation + Delta-G solvation = -194.604246 kcal Electronic energy + Delta-G solvation = -28555.743887 eV Core-core repulsion = 23855.899034 eV Total energy + Delta-G solvation = -4699.844853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.15960 -47.66361 -47.62194 -40.35533 -38.61535 -37.91679 -35.72229 -33.92679 -31.47720 -31.24273 -31.08079 -28.56804 -27.17553 -26.14829 -24.13831 -23.54149 -22.46730 -21.16941 -19.43911 -18.60743 -18.50204 -18.32361 -18.04216 -17.89882 -16.44405 -16.36185 -15.95710 -15.39683 -14.88857 -14.79539 -14.64917 -14.39407 -14.32976 -14.15131 -14.05083 -13.92832 -13.79446 -13.72732 -13.61044 -13.27687 -13.20015 -12.92699 -12.42916 -12.25548 -12.06922 -11.85675 -11.62993 -11.53855 -11.18961 -11.04672 -10.94810 -10.46196 -10.24450 -9.53773 -9.13303 -8.75943 -8.38796 -8.28686 -8.00710 -6.44728 -3.85900 1.12107 1.24443 2.69593 3.03421 3.18320 3.24596 3.28403 3.47115 3.62690 3.81504 3.89930 3.94736 4.15198 4.28771 4.59970 4.68797 4.71821 4.83433 4.89527 4.96592 5.03362 5.17767 5.21804 5.22858 5.31464 5.51826 5.66587 5.81307 5.88196 6.00899 6.13764 6.20899 6.39524 6.54292 6.77060 7.16712 7.18543 7.52303 8.01261 8.56162 9.13711 9.49077 9.99616 10.72724 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.002852 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.155363 B = 9814.306290 C =10896.769013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.134 3.866 4 C -0.156 4.156 5 C -0.056 4.056 6 C -0.124 4.124 7 C 0.100 3.900 8 H 0.129 0.871 9 N -0.639 5.639 10 C 0.033 3.967 11 C 0.441 3.559 12 O -0.583 6.583 13 N -0.559 5.559 14 C -0.301 4.301 15 H 0.103 0.897 16 C 0.024 3.976 17 N -0.900 5.900 18 Si 0.932 3.068 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.415 3.585 23 F -0.181 7.181 24 F -0.183 7.183 25 F -0.181 7.181 26 C -0.035 4.035 27 C -0.210 4.210 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.359 0.641 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.393 0.607 37 H 0.273 0.727 38 H 0.131 0.869 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -18.485 11.405 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.089 3.911 4 C -0.174 4.174 5 C -0.074 4.074 6 C -0.125 4.125 7 C -0.014 4.014 8 H 0.146 0.854 9 N -0.270 5.270 10 C -0.099 4.099 11 C 0.227 3.773 12 O -0.468 6.468 13 N -0.195 5.195 14 C -0.430 4.430 15 H 0.121 0.879 16 C -0.178 4.178 17 N -0.541 5.541 18 Si 0.759 3.241 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.358 3.642 23 F -0.162 7.162 24 F -0.164 7.164 25 F -0.162 7.162 26 C -0.054 4.054 27 C -0.228 4.228 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.182 0.818 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.226 0.774 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.225 -18.996 10.630 21.881 hybrid contribution 0.047 1.592 0.551 1.685 sum -2.178 -17.404 11.181 20.800 Atomic orbital electron populations 1.23074 0.78275 1.03888 1.01641 1.86052 1.21521 1.27045 1.88598 1.19099 0.92427 0.84111 0.95507 1.20309 0.91312 0.98394 1.07431 1.20768 0.99818 0.90669 0.96187 1.19133 0.93931 0.92270 1.07210 1.21758 1.02096 0.92841 0.84682 0.85369 1.60269 1.08949 1.20590 1.37227 1.22050 0.95988 0.92767 0.99095 1.19578 0.88296 0.83796 0.85666 1.90534 1.16299 1.74248 1.65680 1.41820 1.12586 1.23555 1.41584 1.19656 0.96273 1.05114 1.22001 0.87896 1.25274 0.95895 0.98158 0.98515 1.69606 1.09615 1.30431 1.44458 0.85905 0.78938 0.79242 0.80061 1.19878 1.20945 1.19842 1.22221 0.73715 0.76438 0.91797 1.93161 1.36503 1.95688 1.90866 1.93170 1.79802 1.69229 1.74229 1.93180 1.82297 1.43922 1.96832 1.20819 0.93714 0.97524 0.93313 1.21222 1.00226 0.92066 1.09329 0.88291 0.92559 0.92384 0.84972 0.84975 0.81792 0.91967 0.88729 0.77355 0.91738 0.85074 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.31 10.50 -19.42 -0.20 -3.51 16 3 C 0.13 1.50 6.69 -39.21 -0.26 1.24 16 4 C -0.16 -1.64 9.99 -39.43 -0.39 -2.04 16 5 C -0.06 -0.59 9.66 -39.61 -0.38 -0.97 16 6 C -0.12 -1.50 4.64 -104.60 -0.49 -1.98 16 7 C 0.10 1.23 2.34 -68.86 -0.16 1.07 16 8 H 0.13 1.32 7.66 -51.93 -0.40 0.93 16 9 N -0.64 -9.89 5.33 -109.21 -0.58 -10.47 16 10 C 0.03 0.56 5.87 -4.98 -0.03 0.53 16 11 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 12 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 13 N -0.56 -13.97 5.29 -10.96 -0.06 -14.02 16 14 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 15 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 16 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 17 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 18 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.42 5.32 2.75 37.16 0.10 5.42 16 23 F -0.18 -2.45 15.52 2.25 0.03 -2.42 16 24 F -0.18 -2.26 17.02 2.25 0.04 -2.22 16 25 F -0.18 -2.51 15.04 2.25 0.03 -2.48 16 26 C -0.04 -0.44 8.55 -39.61 -0.34 -0.78 16 27 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.33 7.67 -51.93 -0.40 -0.06 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.13 1.06 8.03 -52.49 -0.42 0.64 16 33 H 0.36 5.86 6.93 -39.29 -0.27 5.59 16 34 H 0.06 0.99 6.03 -51.93 -0.31 0.67 16 35 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 36 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 38 H 0.13 1.65 7.10 -52.49 -0.37 1.27 16 39 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -31.75 345.73 -5.38 -37.14 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.00 Total: 12.70 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.64 Total: 3.15 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.08 Total: -48.04 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.12 Total: -18.91 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.11 Total: -7.12 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.75 -5.38 -37.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183419761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.469 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds