Wall clock time and date at job start Tue Mar 31 2020 16:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 117.00440 * 2 1 4 4 C 1.38731 * 120.06133 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94780 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05438 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94426 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47294 * 19.99820 * 7 6 5 9 9 N 1.46905 * 109.47206 * 140.00101 * 7 6 5 10 10 C 1.46901 * 110.99870 * 205.00135 * 9 7 6 11 11 C 1.50697 * 109.46943 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.37102 * 120.00095 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99386 * 359.97438 * 14 13 11 16 16 C 1.38941 * 120.00393 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99786 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47191 * 60.00031 * 18 16 14 20 20 H 1.48504 * 109.47312 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47299 * 300.00334 * 18 16 14 22 22 C 1.53002 * 109.47093 * 260.00110 * 7 6 5 23 23 F 1.39899 * 109.46960 * 299.99617 * 22 7 6 24 24 F 1.39896 * 109.47046 * 59.99939 * 22 7 6 25 25 F 1.39902 * 109.47115 * 180.02562 * 22 7 6 26 26 C 1.38265 * 120.11305 * 0.27645 * 6 5 4 27 27 C 1.38141 * 120.05409 * 359.45048 * 26 6 5 28 28 H 1.08999 * 109.47414 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46790 * 300.00649 * 1 2 3 30 30 H 1.08998 * 109.46840 * 59.99988 * 1 2 3 31 31 H 1.08003 * 120.02341 * 359.95240 * 4 3 2 32 32 H 1.08001 * 119.97294 * 180.02562 * 5 4 3 33 33 H 1.00901 * 110.99869 * 81.04847 * 9 7 6 34 34 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 35 35 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 36 36 H 0.96997 * 120.00713 * 359.97438 * 13 11 10 37 37 H 0.97001 * 119.99428 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.96977 * 179.70664 * 26 6 5 39 39 H 1.08004 * 120.03148 * 180.27824 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0118 4.9034 -0.3536 9 7 3.2636 5.9355 -0.8944 10 6 4.1515 6.9948 -1.3918 11 6 3.3767 7.9141 -2.3004 12 8 2.2007 7.7070 -2.5130 13 7 3.9909 8.9659 -2.8775 14 6 3.2861 9.8020 -3.7046 15 1 2.2389 9.6175 -3.8938 16 6 3.9191 10.8866 -4.2992 17 7 5.1934 11.1107 -4.0692 18 14 2.9590 12.0254 -5.4265 19 1 1.8343 12.6354 -4.6728 20 1 3.8567 13.0960 -5.9298 21 1 2.4229 11.2497 -6.5738 22 6 3.9940 5.5881 1.4172 23 9 2.6777 5.7359 1.8675 24 9 4.6821 4.7148 2.2663 25 9 4.6286 6.8349 1.4160 26 6 1.9212 3.6047 0.0031 27 6 1.2916 2.3751 -0.0021 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0208 0.3798 0.0017 32 1 5.1346 2.5749 0.0000 33 1 2.4564 6.3274 -0.4328 34 1 4.5454 7.5640 -0.5498 35 1 4.9767 6.5469 -1.9454 36 1 4.9314 9.1314 -2.7079 37 1 5.6353 11.8677 -4.4846 38 1 1.3344 4.5114 0.0066 39 1 0.2130 2.3202 -0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183419761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:13 Heat of formation + Delta-G solvation = -216.339181 kcal Electronic energy + Delta-G solvation = -28556.686384 eV Core-core repulsion = 23855.899034 eV Total energy + Delta-G solvation = -4700.787350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.19226 -48.71909 -48.63599 -41.15634 -40.22933 -38.97607 -36.90069 -35.88026 -33.31391 -32.32147 -32.06006 -29.51652 -27.97854 -27.63691 -25.79594 -24.49675 -23.33636 -22.08308 -21.17946 -19.98839 -19.60750 -19.50571 -19.10902 -19.09039 -17.86414 -17.27953 -16.86828 -16.63642 -16.34204 -16.04003 -15.97727 -15.60819 -15.53651 -15.33344 -15.16749 -15.08505 -14.83445 -14.80953 -14.61503 -14.47816 -14.16654 -14.12349 -13.67537 -13.49353 -13.29729 -13.05489 -12.89790 -12.81187 -12.59287 -12.43237 -12.12703 -11.93364 -11.73129 -11.50877 -10.43522 -10.03103 -9.96336 -9.76676 -9.17039 -8.46883 -5.95750 0.26695 0.40708 1.39860 1.42327 1.52957 1.69879 2.02446 2.24854 2.36390 2.47524 2.61501 2.89021 2.98871 3.17574 3.20409 3.38242 3.73877 3.78540 3.92774 4.07086 4.22676 4.31887 4.39522 4.40627 4.44439 4.52487 4.56109 4.71299 4.74614 5.06749 5.17602 5.34612 5.40306 5.45038 5.64351 5.75089 5.90339 6.00673 6.41455 6.58136 7.11372 7.54050 8.08673 8.70137 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.002852 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.155363 B = 9814.306290 C =10896.769013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.126 3.874 4 C -0.162 4.162 5 C -0.053 4.053 6 C -0.139 4.139 7 C 0.107 3.893 8 H 0.155 0.845 9 N -0.649 5.649 10 C 0.048 3.952 11 C 0.439 3.561 12 O -0.622 6.622 13 N -0.570 5.570 14 C -0.335 4.335 15 H 0.080 0.920 16 C -0.012 4.012 17 N -0.919 5.919 18 Si 0.992 3.008 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.272 1.272 22 C 0.417 3.583 23 F -0.188 7.188 24 F -0.178 7.178 25 F -0.188 7.188 26 C -0.053 4.053 27 C -0.217 4.217 28 H 0.121 0.879 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.352 0.648 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.398 0.602 37 H 0.278 0.722 38 H 0.120 0.880 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 -19.485 11.547 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.080 3.920 4 C -0.180 4.180 5 C -0.071 4.071 6 C -0.140 4.140 7 C -0.006 4.006 8 H 0.172 0.828 9 N -0.280 5.280 10 C -0.084 4.084 11 C 0.227 3.773 12 O -0.508 6.508 13 N -0.207 5.207 14 C -0.464 4.464 15 H 0.098 0.902 16 C -0.212 4.212 17 N -0.559 5.559 18 Si 0.816 3.184 19 H -0.197 1.197 20 H -0.195 1.195 21 H -0.197 1.197 22 C 0.360 3.640 23 F -0.169 7.169 24 F -0.159 7.159 25 F -0.169 7.169 26 C -0.072 4.072 27 C -0.236 4.236 28 H 0.140 0.860 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.168 0.832 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.355 -20.014 10.789 22.777 hybrid contribution -0.273 1.786 0.567 1.893 sum -1.628 -18.228 11.357 21.538 Atomic orbital electron populations 1.23337 0.76611 1.05606 1.02112 1.86040 1.23318 1.26663 1.88425 1.19315 0.93003 0.84373 0.95260 1.20629 0.91359 0.99226 1.06801 1.21061 1.01143 0.89918 0.94992 1.19201 0.93896 0.92554 1.08317 1.21817 1.03089 0.91978 0.83685 0.82768 1.60241 1.08906 1.20256 1.38580 1.21925 0.95660 0.92324 0.98473 1.20628 0.88160 0.83481 0.85074 1.90505 1.18354 1.75092 1.66888 1.41884 1.12722 1.24095 1.41956 1.19629 0.95838 1.06882 1.24060 0.90222 1.26031 0.96832 0.98937 0.99359 1.69665 1.10454 1.30918 1.44894 0.85002 0.77830 0.77492 0.78102 1.19739 1.19505 1.19675 1.22262 0.73370 0.76182 0.92144 1.93151 1.37100 1.95712 1.90982 1.93177 1.79635 1.68989 1.74111 1.93163 1.82390 1.44491 1.96868 1.20873 0.94243 0.97622 0.94448 1.21376 1.01093 0.91818 1.09295 0.86036 0.91838 0.92158 0.83176 0.82251 0.82651 0.90424 0.85995 0.76841 0.91243 0.86187 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.40 10.50 -92.39 -0.97 -7.37 16 3 C 0.13 2.67 6.69 22.51 0.15 2.82 16 4 C -0.16 -3.09 9.99 22.36 0.22 -2.87 16 5 C -0.05 -0.98 9.66 22.25 0.21 -0.77 16 6 C -0.14 -3.14 4.64 -19.85 -0.09 -3.24 16 7 C 0.11 2.44 2.34 44.17 0.10 2.55 16 8 H 0.15 2.68 7.66 -2.39 -0.02 2.66 16 9 N -0.65 -19.55 5.33 -499.44 -2.66 -22.21 16 10 C 0.05 1.56 5.87 85.56 0.50 2.06 16 11 C 0.44 20.43 7.82 87.66 0.69 21.11 16 12 O -0.62 -33.79 15.78 -3.07 -0.05 -33.84 16 13 N -0.57 -28.77 5.29 -306.99 -1.62 -30.39 16 14 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 15 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 16 C -0.01 -0.61 5.50 84.92 0.47 -0.15 16 17 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 18 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 C 0.42 10.10 2.75 71.98 0.20 10.30 16 23 F -0.19 -5.03 15.52 44.97 0.70 -4.33 16 24 F -0.18 -4.05 17.02 44.97 0.77 -3.29 16 25 F -0.19 -4.94 15.04 44.97 0.68 -4.26 16 26 C -0.05 -1.31 8.55 22.25 0.19 -1.12 16 27 C -0.22 -4.73 9.04 22.37 0.20 -4.53 16 28 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.67 7.67 -2.38 -0.02 0.66 16 30 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.16 1.99 8.03 -2.91 -0.02 1.96 16 33 H 0.35 11.54 6.93 -89.69 -0.62 10.92 16 34 H 0.08 2.33 6.03 -2.39 -0.01 2.32 16 35 H 0.12 3.35 8.05 -2.39 -0.02 3.33 16 36 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 37 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 38 H 0.12 3.12 7.10 -2.91 -0.02 3.09 16 39 H 0.14 2.55 6.30 -2.91 -0.02 2.53 16 Total: -1.00 -68.57 345.73 3.70 -64.87 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.22 Total: 35.51 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 4.77 Total: 9.50 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -4.00 Total: -101.45 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.02 Total: -41.21 kcal Atomic # 9 Polarization: -14.02 SS G_CDS: 2.14 Total: -11.88 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -68.57 3.70 -64.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183419761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.468 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds