Wall clock time and date at job start Tue Mar 31 2020 16:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40422 * 126.83691 * 2 1 4 4 C 1.30585 * 107.01101 * 179.88738 * 3 2 1 5 5 N 1.33343 * 109.14179 * 0.37904 * 4 3 2 6 6 C 1.31651 * 109.68762 * 359.75266 * 5 4 3 7 7 S 1.76204 * 126.08305 * 180.02562 * 6 5 4 8 8 C 1.80998 * 100.00151 * 359.97438 * 7 6 5 9 9 C 1.50700 * 109.46958 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00036 * 4.04392 * 9 8 7 11 11 N 1.34779 * 119.99866 * 184.03653 * 9 8 7 12 12 C 1.46493 * 120.00165 * 185.20759 * 11 9 8 13 13 C 1.50700 * 109.47150 * 90.00403 * 12 11 9 14 14 H 1.08005 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00403 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99495 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00115 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47133 * 60.00035 * 17 15 13 19 19 H 1.48500 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46910 * 299.99764 * 17 15 13 21 21 C 1.39933 * 119.99916 * 5.21342 * 11 9 8 22 22 C 1.38874 * 120.06656 * 292.25705 * 21 11 9 23 23 C 1.38115 * 119.92472 * 179.74899 * 22 21 11 24 24 C 1.38281 * 120.07330 * 0.52904 * 23 22 21 25 25 C 1.38283 * 120.13665 * 359.74731 * 24 23 22 26 26 C 1.38112 * 120.07579 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47452 * 269.68833 * 1 2 3 28 28 H 1.09004 * 109.47232 * 29.68224 * 1 2 3 29 29 H 1.08995 * 109.47828 * 149.68260 * 1 2 3 30 30 H 1.08001 * 125.43122 * 180.11618 * 4 3 2 31 31 H 1.09007 * 109.47098 * 300.00263 * 8 7 6 32 32 H 1.08992 * 109.47167 * 60.00184 * 8 7 6 33 33 H 1.09004 * 109.47424 * 210.00358 * 12 11 9 34 34 H 1.09000 * 109.47453 * 330.00264 * 12 11 9 35 35 H 0.97001 * 119.99825 * 179.97438 * 16 15 13 36 36 H 1.08004 * 120.03675 * 0.02924 * 22 21 11 37 37 H 1.08001 * 119.96435 * 180.27983 * 23 22 21 38 38 H 1.07995 * 119.93211 * 179.72239 * 24 23 22 39 39 H 1.07998 * 119.96214 * 180.02562 * 25 24 23 40 40 H 1.07999 * 120.03645 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3069 1.1239 0.0000 4 6 3.5353 0.6810 0.0025 5 7 3.5194 -0.6524 -0.0043 6 6 2.2747 -1.0811 -0.0059 7 16 1.7572 -2.7654 -0.0136 8 6 3.3687 -3.5893 -0.0188 9 6 3.1692 -5.0830 -0.0265 10 8 2.0503 -5.5450 -0.1023 11 7 4.2340 -5.9056 0.0508 12 6 4.0513 -7.3539 -0.0713 13 6 4.1651 -7.7543 -1.5197 14 1 4.3551 -7.0048 -2.2738 15 6 4.0268 -9.0774 -1.8822 16 7 3.7960 -9.9900 -0.9639 17 14 4.1672 -9.5735 -3.6776 18 1 5.5095 -9.1993 -4.1910 19 1 3.9809 -11.0415 -3.8016 20 1 3.1224 -8.8739 -4.4676 21 6 5.5143 -5.3761 0.2478 22 6 6.1142 -4.6171 -0.7485 23 6 7.3757 -4.0916 -0.5489 24 6 8.0459 -4.3296 0.6370 25 6 7.4535 -5.0897 1.6287 26 6 6.1899 -5.6133 1.4377 27 1 -0.3634 -0.0056 1.0276 28 1 -0.3634 0.8928 -0.5089 29 1 -0.3634 -0.8870 -0.5187 30 1 4.4228 1.2965 0.0049 31 1 3.9255 -3.2929 -0.9078 32 1 3.9268 -3.3016 0.8721 33 1 4.8182 -7.8672 0.5089 34 1 3.0660 -7.6289 0.3053 35 1 3.6982 -10.9208 -1.2190 36 1 5.5929 -4.4342 -1.6766 37 1 7.8410 -3.4974 -1.3216 38 1 9.0341 -3.9213 0.7888 39 1 7.9793 -5.2735 2.5540 40 1 5.7280 -6.2073 2.2125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184168092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:08 Heat of formation + Delta-G solvation = 95.893505 kcal Electronic energy + Delta-G solvation = -25336.084932 eV Core-core repulsion = 21665.739370 eV Total energy + Delta-G solvation = -3670.345563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00111 -40.00193 -38.19023 -35.00659 -34.22265 -32.80672 -31.51713 -30.83341 -30.00466 -29.34870 -27.53322 -26.83875 -23.21206 -22.67012 -22.48040 -22.17757 -22.00194 -19.24925 -18.13065 -16.90232 -16.63245 -16.32720 -16.25330 -16.03885 -15.61859 -15.20824 -14.72751 -14.44051 -14.34963 -14.24293 -13.90297 -13.47336 -13.29887 -13.17234 -13.06638 -12.72561 -12.35751 -12.12335 -11.96216 -11.52469 -11.28456 -11.08299 -10.89198 -10.78634 -10.64684 -10.45955 -10.25207 -10.22218 -9.91706 -9.83463 -9.60462 -8.70816 -8.66849 -8.49290 -7.90004 -7.76679 -6.12035 -4.17250 0.87240 1.32670 1.52871 1.62746 1.89238 2.32338 2.73985 3.00455 3.29147 3.33154 3.36013 3.63572 4.00448 4.27551 4.38903 4.47901 4.70012 4.86427 5.08007 5.09338 5.13788 5.16382 5.21708 5.23448 5.33316 5.46936 5.65882 5.79845 5.98392 6.00051 6.23790 6.27290 6.34237 6.57181 6.71598 6.74713 6.87046 7.14647 7.24354 7.34918 7.81068 7.82355 8.09747 8.13057 8.61298 8.86188 9.47569 10.96342 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003821 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.475288 B = 7326.623604 C = 8813.352447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.366 5.366 3 N -0.323 5.323 4 C 0.208 3.792 5 N -0.544 5.544 6 C 0.241 3.759 7 S 0.082 5.918 8 C -0.138 4.138 9 C 0.532 3.468 10 O -0.516 6.516 11 N -0.550 5.550 12 C 0.248 3.752 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.155 3.845 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.122 4.122 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.219 0.781 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.265 0.735 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 18.049 4.352 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.158 5.158 3 N -0.152 5.152 4 C -0.097 4.097 5 N -0.276 5.276 6 C -0.143 4.143 7 S 0.308 5.692 8 C -0.290 4.290 9 C 0.317 3.683 10 O -0.392 6.392 11 N -0.278 5.278 12 C 0.131 3.869 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.063 3.937 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.142 4.142 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.235 0.765 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.158 17.645 4.334 18.170 hybrid contribution 1.413 0.080 -1.073 1.776 sum 1.255 17.725 3.261 18.066 Atomic orbital electron populations 1.22033 0.73261 1.05219 1.04257 1.50107 1.07783 1.02444 1.55501 1.77905 1.02128 1.07815 1.27316 1.25953 0.95696 0.90461 0.97604 1.71095 1.17950 1.11509 1.27037 1.26906 0.89359 0.97781 1.00228 1.86296 1.07935 0.83681 1.91297 1.23905 0.98839 0.96875 1.09376 1.19376 0.85222 0.86133 0.77529 1.90730 1.22728 1.76773 1.48991 1.45832 1.03084 1.09819 1.69055 1.19519 0.98991 0.70631 0.97792 1.21312 1.50092 0.93119 0.92431 0.92335 1.24897 0.94787 0.96204 0.97899 1.69912 1.48406 1.01710 1.33082 0.86537 0.78698 0.77422 0.84702 1.20142 1.21073 1.20067 1.17740 0.86757 0.95977 0.93197 1.21344 0.95572 0.99072 0.98051 1.20963 0.94428 0.99693 0.97439 1.21073 0.99837 0.99791 0.94201 1.20963 0.94771 0.97872 0.99203 1.21276 0.95617 1.00692 0.96570 0.89794 0.88642 0.88590 0.76513 0.85722 0.86068 0.94348 0.93065 0.92504 0.85927 0.86063 0.86340 0.86041 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.34 59.85 0.68 1.44 16 2 N -0.37 -4.53 4.05 -68.16 -0.28 -4.81 16 3 N -0.32 -4.20 12.68 29.29 0.37 -3.82 16 4 C 0.21 2.52 13.02 -91.83 -1.20 1.33 16 5 N -0.54 -7.67 10.58 -14.70 -0.16 -7.82 16 6 C 0.24 3.32 8.01 -89.39 -0.72 2.60 16 7 S 0.08 1.17 20.81 -107.50 -2.24 -1.07 16 8 C -0.14 -2.15 4.23 36.01 0.15 -1.99 16 9 C 0.53 10.63 7.59 -10.98 -0.08 10.54 16 10 O -0.52 -12.04 15.42 5.56 0.09 -11.95 16 11 N -0.55 -11.42 2.51 -114.74 -0.29 -11.71 16 12 C 0.25 6.28 5.15 -5.20 -0.03 6.26 16 13 C -0.53 -14.65 9.39 -34.44 -0.32 -14.98 16 14 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 17 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.16 2.73 4.45 -83.69 -0.37 2.36 16 22 C -0.12 -1.90 8.44 -39.39 -0.33 -2.23 16 23 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 24 C -0.13 -1.59 10.04 -39.55 -0.40 -1.99 16 25 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 26 C -0.12 -1.90 9.67 -39.39 -0.38 -2.29 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.68 7.76 -51.93 -0.40 0.28 16 30 H 0.22 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.12 1.86 6.84 -51.91 -0.35 1.50 16 32 H 0.12 1.77 7.91 -51.92 -0.41 1.36 16 33 H 0.04 1.00 7.85 -51.93 -0.41 0.59 16 34 H 0.05 1.44 7.36 -51.93 -0.38 1.06 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.12 1.92 7.56 -52.48 -0.40 1.53 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -33.77 365.01 -10.03 -43.80 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.86 Total: 1.43 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.89 Total: -0.85 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.39 Total: -53.34 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.24 Total: -1.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.77 -10.03 -43.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184168092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.695 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds