Wall clock time and date at job start Tue Mar 31 2020 16:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40422 * 126.83691 * 2 1 4 4 C 1.30585 * 107.01101 * 179.88738 * 3 2 1 5 5 N 1.33343 * 109.14179 * 0.37904 * 4 3 2 6 6 C 1.31651 * 109.68762 * 359.75266 * 5 4 3 7 7 S 1.76204 * 126.08305 * 180.02562 * 6 5 4 8 8 C 1.80998 * 100.00151 * 359.97438 * 7 6 5 9 9 C 1.50700 * 109.46958 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00036 * 4.04392 * 9 8 7 11 11 N 1.34779 * 119.99866 * 184.03653 * 9 8 7 12 12 C 1.46493 * 120.00165 * 185.20759 * 11 9 8 13 13 C 1.50700 * 109.47150 * 90.00403 * 12 11 9 14 14 H 1.08005 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00403 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99495 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00115 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47133 * 60.00035 * 17 15 13 19 19 H 1.48500 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46910 * 299.99764 * 17 15 13 21 21 C 1.39933 * 119.99916 * 5.21342 * 11 9 8 22 22 C 1.38874 * 120.06656 * 292.25705 * 21 11 9 23 23 C 1.38115 * 119.92472 * 179.74899 * 22 21 11 24 24 C 1.38281 * 120.07330 * 0.52904 * 23 22 21 25 25 C 1.38283 * 120.13665 * 359.74731 * 24 23 22 26 26 C 1.38112 * 120.07579 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47452 * 269.68833 * 1 2 3 28 28 H 1.09004 * 109.47232 * 29.68224 * 1 2 3 29 29 H 1.08995 * 109.47828 * 149.68260 * 1 2 3 30 30 H 1.08001 * 125.43122 * 180.11618 * 4 3 2 31 31 H 1.09007 * 109.47098 * 300.00263 * 8 7 6 32 32 H 1.08992 * 109.47167 * 60.00184 * 8 7 6 33 33 H 1.09004 * 109.47424 * 210.00358 * 12 11 9 34 34 H 1.09000 * 109.47453 * 330.00264 * 12 11 9 35 35 H 0.97001 * 119.99825 * 179.97438 * 16 15 13 36 36 H 1.08004 * 120.03675 * 0.02924 * 22 21 11 37 37 H 1.08001 * 119.96435 * 180.27983 * 23 22 21 38 38 H 1.07995 * 119.93211 * 179.72239 * 24 23 22 39 39 H 1.07998 * 119.96214 * 180.02562 * 25 24 23 40 40 H 1.07999 * 120.03645 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3069 1.1239 0.0000 4 6 3.5353 0.6810 0.0025 5 7 3.5194 -0.6524 -0.0043 6 6 2.2747 -1.0811 -0.0059 7 16 1.7572 -2.7654 -0.0136 8 6 3.3687 -3.5893 -0.0188 9 6 3.1692 -5.0830 -0.0265 10 8 2.0503 -5.5450 -0.1023 11 7 4.2340 -5.9056 0.0508 12 6 4.0513 -7.3539 -0.0713 13 6 4.1651 -7.7543 -1.5197 14 1 4.3551 -7.0048 -2.2738 15 6 4.0268 -9.0774 -1.8822 16 7 3.7960 -9.9900 -0.9639 17 14 4.1672 -9.5735 -3.6776 18 1 5.5095 -9.1993 -4.1910 19 1 3.9809 -11.0415 -3.8016 20 1 3.1224 -8.8739 -4.4676 21 6 5.5143 -5.3761 0.2478 22 6 6.1142 -4.6171 -0.7485 23 6 7.3757 -4.0916 -0.5489 24 6 8.0459 -4.3296 0.6370 25 6 7.4535 -5.0897 1.6287 26 6 6.1899 -5.6133 1.4377 27 1 -0.3634 -0.0056 1.0276 28 1 -0.3634 0.8928 -0.5089 29 1 -0.3634 -0.8870 -0.5187 30 1 4.4228 1.2965 0.0049 31 1 3.9255 -3.2929 -0.9078 32 1 3.9268 -3.3016 0.8721 33 1 4.8182 -7.8672 0.5089 34 1 3.0660 -7.6289 0.3053 35 1 3.6982 -10.9208 -1.2190 36 1 5.5929 -4.4342 -1.6766 37 1 7.8410 -3.4974 -1.3216 38 1 9.0341 -3.9213 0.7888 39 1 7.9793 -5.2735 2.5540 40 1 5.7280 -6.2073 2.2125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184168092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:07 Heat of formation + Delta-G solvation = 77.316868 kcal Electronic energy + Delta-G solvation = -25336.890476 eV Core-core repulsion = 21665.739370 eV Total energy + Delta-G solvation = -3671.151106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.95605 -41.47058 -39.52722 -36.61280 -35.08842 -34.82985 -32.56129 -32.02455 -31.42641 -30.64009 -28.70286 -28.30119 -25.05504 -23.90336 -23.55574 -23.32311 -23.01762 -20.65142 -19.22297 -18.70864 -18.22837 -17.71323 -17.24342 -17.07873 -16.99568 -16.73579 -16.17203 -15.61889 -15.57096 -15.43754 -15.13529 -14.61503 -14.51304 -14.27916 -14.17653 -13.98501 -13.76412 -13.59491 -13.38250 -13.06277 -12.85774 -12.64319 -12.46053 -12.17012 -12.11948 -11.91034 -11.74651 -11.47651 -11.29868 -11.14951 -10.81012 -10.66568 -10.15782 -9.80451 -9.28361 -8.96396 -8.25301 -6.39945 -0.24763 0.34533 0.36571 0.52267 0.72516 1.35974 1.40182 1.43804 1.48878 1.49596 1.78889 2.09440 2.38435 2.88061 3.05410 3.28365 3.50031 3.66740 3.85527 4.08236 4.13365 4.22681 4.28885 4.34341 4.35336 4.56725 4.61465 4.66098 4.73134 4.99754 5.10028 5.10495 5.17305 5.37782 5.40027 5.45100 5.55163 5.64959 5.66161 5.72060 5.98469 6.06772 6.51567 6.66730 6.85499 7.05903 7.30766 8.82141 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003821 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.475288 B = 7326.623604 C = 8813.352447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.364 5.364 3 N -0.336 5.336 4 C 0.205 3.795 5 N -0.562 5.562 6 C 0.229 3.771 7 S 0.082 5.918 8 C -0.119 4.119 9 C 0.526 3.474 10 O -0.561 6.561 11 N -0.552 5.552 12 C 0.266 3.734 13 C -0.546 4.546 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.274 1.274 21 C 0.118 3.882 22 C -0.132 4.132 23 C -0.102 4.102 24 C -0.117 4.117 25 C -0.104 4.104 26 C -0.138 4.138 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.253 0.747 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.024 0.976 34 H 0.012 0.988 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 20.239 3.696 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.157 5.157 3 N -0.166 5.166 4 C -0.099 4.099 5 N -0.295 5.295 6 C -0.155 4.155 7 S 0.308 5.692 8 C -0.271 4.271 9 C 0.314 3.686 10 O -0.441 6.441 11 N -0.279 5.279 12 C 0.146 3.854 13 C -0.584 4.584 14 H 0.073 0.927 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.790 3.210 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.199 1.199 21 C 0.028 3.972 22 C -0.152 4.152 23 C -0.120 4.120 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.158 4.158 27 H 0.118 0.882 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.269 0.731 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.042 0.958 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.169 0.831 38 H 0.176 0.824 39 H 0.170 0.830 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.035 19.873 3.690 20.315 hybrid contribution 0.786 -0.508 -0.793 1.227 sum 2.821 19.366 2.897 19.783 Atomic orbital electron populations 1.22392 0.71185 1.06463 1.05722 1.50416 1.09050 1.01833 1.54390 1.77877 1.02657 1.08255 1.27775 1.26673 0.96603 0.90070 0.96535 1.71069 1.18254 1.12652 1.27489 1.26709 0.89947 0.97554 1.01266 1.86283 1.06791 0.84338 1.91800 1.23622 0.99968 0.93322 1.10147 1.20058 0.84326 0.87974 0.76288 1.90693 1.24337 1.78018 1.51008 1.45625 1.05078 1.08178 1.68975 1.18926 0.96156 0.73816 0.96499 1.21582 1.50106 0.93434 0.93272 0.92712 1.25792 0.94231 0.96163 1.02435 1.70031 1.49100 1.02085 1.35230 0.85497 0.79105 0.77301 0.79146 1.18776 1.20210 1.19946 1.17996 0.85866 0.98304 0.95029 1.21384 0.96869 0.99552 0.97359 1.21329 0.93069 0.98969 0.98657 1.21557 1.01010 0.97992 0.92958 1.21329 0.93421 0.96802 1.00712 1.21374 0.96996 1.01435 0.95949 0.88201 0.86910 0.87894 0.73106 0.84950 0.85021 0.95756 0.97010 0.92251 0.86670 0.83058 0.82383 0.83013 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 11.34 127.77 1.45 2.66 16 2 N -0.36 -8.53 4.05 -369.55 -1.50 -10.03 16 3 N -0.34 -8.15 12.68 -61.25 -0.78 -8.93 16 4 C 0.21 4.56 13.02 180.77 2.35 6.91 16 5 N -0.56 -15.02 10.58 -200.41 -2.12 -17.14 16 6 C 0.23 6.11 8.01 179.92 1.44 7.56 16 7 S 0.08 2.35 20.81 -56.49 -1.18 1.18 16 8 C -0.12 -3.77 4.23 71.24 0.30 -3.47 16 9 C 0.53 22.12 7.59 87.66 0.67 22.79 16 10 O -0.56 -27.84 15.42 -3.04 -0.05 -27.88 16 11 N -0.55 -24.15 2.51 -635.31 -1.59 -25.75 16 12 C 0.27 14.34 5.15 85.63 0.44 14.78 16 13 C -0.55 -31.25 9.39 25.60 0.24 -31.01 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.77 5.46 84.66 0.46 1.23 16 16 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 17 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 C 0.12 4.25 4.45 38.15 0.17 4.42 16 22 C -0.13 -4.06 8.44 22.39 0.19 -3.87 16 23 C -0.10 -2.35 10.04 22.25 0.22 -2.13 16 24 C -0.12 -2.37 10.04 22.29 0.22 -2.14 16 25 C -0.10 -2.42 10.04 22.25 0.22 -2.20 16 26 C -0.14 -4.31 9.67 22.39 0.22 -4.09 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.36 7.76 -2.39 -0.02 1.34 16 30 H 0.25 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.13 3.97 6.84 -2.39 -0.02 3.96 16 32 H 0.13 3.87 7.91 -2.40 -0.02 3.85 16 33 H 0.02 1.36 7.85 -2.38 -0.02 1.34 16 34 H 0.01 0.72 7.36 -2.39 -0.02 0.70 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.12 3.62 7.56 -2.91 -0.02 3.60 16 37 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -76.13 365.01 4.76 -71.37 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.06 Total: 14.30 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 8.60 Total: 11.42 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -5.70 Total: -116.92 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.18 Total: 1.18 kcal Total: -76.13 4.76 -71.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184168092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.689 kcal (2) G-P(sol) polarization free energy of solvation -76.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds