Wall clock time and date at job start Tue Mar 31 2020 16:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47657 * 2 1 4 4 C 1.36536 * 127.13867 * 90.02002 * 3 2 1 5 5 S 1.76199 * 126.48713 * 0.02562 * 4 3 2 6 6 N 1.31287 * 107.02733 * 179.74221 * 4 3 2 7 7 N 1.28526 * 109.85512 * 0.26473 * 6 4 3 8 8 C 1.30296 * 110.07990 * 0.02562 * 7 6 4 9 9 C 1.50696 * 126.33943 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47340 * 89.97576 * 9 8 7 11 11 C 1.34777 * 120.00306 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00173 * 359.97438 * 11 10 9 13 13 C 1.47641 * 119.99906 * 179.97438 * 11 10 9 14 14 C 1.40017 * 119.89768 * 359.72088 * 13 11 10 15 15 C 1.36311 * 120.10479 * 179.75919 * 14 13 11 16 16 C 1.40887 * 119.89308 * 0.51493 * 15 14 13 17 17 C 1.41111 * 120.10344 * 179.71543 * 16 15 14 18 18 H 1.07997 * 119.99911 * 204.64881 * 17 16 15 19 19 C 1.40224 * 119.99802 * 24.65431 * 17 16 15 20 20 N 1.30645 * 120.00599 * 17.86681 * 19 17 16 21 21 Si 1.86801 * 119.99721 * 197.86315 * 19 17 16 22 22 H 1.48499 * 109.47118 * 90.00093 * 21 19 17 23 23 H 1.48503 * 109.46951 * 209.99789 * 21 19 17 24 24 H 1.48499 * 109.47297 * 330.00017 * 21 19 17 25 25 C 1.40892 * 119.79451 * 359.73715 * 16 15 14 26 26 C 1.36316 * 119.88971 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.46509 * 60.00059 * 1 2 3 28 28 H 1.09001 * 109.47484 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46842 * 300.00271 * 1 2 3 30 30 H 1.09007 * 109.47303 * 239.99707 * 2 1 3 31 31 H 1.09005 * 109.47006 * 120.00029 * 2 1 3 32 32 H 1.41002 * 100.00232 * 269.71068 * 5 4 3 33 33 H 1.08998 * 109.47206 * 209.97331 * 9 8 7 34 34 H 1.09002 * 109.47273 * 329.97459 * 9 8 7 35 35 H 0.97008 * 120.00000 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.94477 * 0.02562 * 14 13 11 37 37 H 1.08006 * 120.05641 * 180.23207 * 15 14 13 38 38 H 0.96991 * 120.00498 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.05491 * 179.97438 * 25 16 15 40 40 H 1.07994 * 119.94381 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2937 2.1582 1.0884 5 16 2.1292 1.6895 2.7790 6 7 2.7099 3.3187 0.6370 7 7 2.7056 3.3141 -0.6482 8 6 2.2896 2.1611 -1.0901 9 6 2.1423 1.7588 -2.5349 10 7 3.3943 1.1609 -3.0054 11 6 3.4967 0.7243 -4.2764 12 8 2.5499 0.8262 -5.0324 13 6 4.7586 0.1223 -4.7507 14 6 5.8495 0.0114 -3.8799 15 6 7.0150 -0.5482 -4.3119 16 6 7.1244 -1.0054 -5.6401 17 6 8.3308 -1.5799 -6.0937 18 1 8.5734 -1.5659 -7.1459 19 6 9.2145 -2.1691 -5.1781 20 7 8.7943 -2.5036 -3.9872 21 14 10.9926 -2.4760 -5.6615 22 1 11.8129 -1.2890 -5.3103 23 1 11.5052 -3.6648 -4.9339 24 1 11.0732 -2.7181 -7.1244 25 6 6.0257 -0.8868 -6.5140 26 6 4.8627 -0.3302 -6.0716 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.7993 2.0932 3.0168 33 1 1.3349 1.0327 -2.6294 34 1 1.9117 2.6388 -3.1354 35 1 4.1498 1.0800 -2.4024 36 1 5.7659 0.3658 -2.8632 37 1 7.8547 -0.6368 -3.6385 38 1 9.4057 -2.9108 -3.3538 39 1 6.1051 -1.2355 -7.5331 40 1 4.0201 -0.2385 -6.7409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270329562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:47 Heat of formation + Delta-G solvation = 60.107525 kcal Electronic energy + Delta-G solvation = -24886.323828 eV Core-core repulsion = 21214.426469 eV Total energy + Delta-G solvation = -3671.897359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.30924 -39.20793 -37.22623 -36.22497 -34.69640 -33.93326 -31.45989 -31.07131 -30.13440 -29.50235 -27.29606 -25.56431 -24.58321 -22.94680 -22.06174 -21.25059 -20.85447 -19.79071 -18.62679 -17.59308 -17.32287 -16.85792 -16.67437 -15.76959 -15.45388 -15.26019 -14.84001 -14.58625 -14.20375 -14.00508 -13.64933 -13.50080 -13.20878 -12.96480 -12.79635 -12.65593 -12.17967 -12.14246 -11.97249 -11.82677 -11.65103 -11.42289 -11.32743 -11.00590 -10.83759 -10.70702 -10.57515 -10.11195 -9.71819 -9.61080 -9.40771 -9.07073 -8.88830 -8.80932 -7.78422 -7.61189 -7.09236 -4.66098 0.57842 0.95710 1.89431 2.14154 2.16612 2.51991 2.88332 2.93397 2.95566 2.98647 3.63657 3.69896 3.75941 3.93726 4.11606 4.40331 4.46610 4.56929 4.74851 4.85279 5.10683 5.15975 5.38398 5.48102 5.50689 5.56785 5.63918 5.92997 5.98826 6.25405 6.26732 6.62394 6.72151 6.77253 6.96999 7.06919 7.37388 7.56193 7.71095 7.80614 8.00474 8.04934 8.25576 8.34349 8.57453 8.69264 8.88948 9.82604 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.002624 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.224079 B =10669.769141 C =11740.240503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 N -0.449 5.449 4 C 0.143 3.857 5 S -0.005 6.005 6 N -0.238 5.238 7 N -0.271 5.271 8 C 0.189 3.811 9 C 0.211 3.789 10 N -0.740 5.740 11 C 0.578 3.422 12 O -0.571 6.571 13 C -0.287 4.287 14 C -0.061 4.061 15 C -0.177 4.177 16 C 0.129 3.871 17 C -0.440 4.440 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.770 5.770 21 Si 0.914 3.086 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.239 4.239 26 C -0.019 4.019 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.401 0.599 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.099 0.901 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 1.083 12.281 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.032 4.032 3 N -0.142 5.142 4 C -0.232 4.232 5 S 0.145 5.855 6 N -0.083 5.083 7 N -0.114 5.114 8 C -0.079 4.079 9 C 0.085 3.915 10 N -0.396 5.396 11 C 0.373 3.627 12 O -0.453 6.453 13 C -0.291 4.291 14 C -0.080 4.080 15 C -0.196 4.196 16 C 0.126 3.874 17 C -0.467 4.467 18 H 0.104 0.896 19 C -0.148 4.148 20 N -0.393 5.393 21 Si 0.738 3.262 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.182 1.182 25 C -0.259 4.259 26 C -0.038 4.038 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.236 0.764 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.145 2.082 12.831 17.122 hybrid contribution -0.106 -0.986 -0.455 1.091 sum -11.250 1.096 12.375 16.761 Atomic orbital electron populations 1.22154 0.93277 1.04147 1.02995 1.22185 0.96175 0.78190 1.06696 1.47222 1.47286 1.14002 1.05649 1.25925 1.10339 0.92462 0.94474 1.87090 1.20879 1.79587 0.97930 1.74840 1.14228 1.16308 1.02936 1.74218 1.16836 1.17465 1.02917 1.25278 1.01638 0.88814 0.92220 1.19422 0.89147 1.00061 0.82879 1.45917 1.14540 1.65002 1.14108 1.18592 0.88418 0.76069 0.79593 1.90652 1.40648 1.58933 1.55044 1.18783 0.93889 1.19707 0.96735 1.20450 0.93662 0.97714 0.96213 1.20974 0.97524 1.03478 0.97673 1.17800 0.91437 0.86642 0.91527 1.19890 1.01348 1.29898 0.95562 0.89587 1.26116 1.01351 0.93085 0.94210 1.69732 1.37174 1.26422 1.05931 0.86192 0.80852 0.78851 0.80312 1.18856 1.19978 1.18230 1.20722 0.93907 1.11162 1.00082 1.20346 0.96519 0.93529 0.93426 0.91445 0.89377 0.92271 0.87344 0.87056 0.93373 0.89769 0.87946 0.76359 0.89555 0.86188 0.90149 0.88291 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.09 0.67 6.48 -4.04 -0.03 0.64 16 3 N -0.45 -4.87 2.81 -113.53 -0.32 -5.19 16 4 C 0.14 1.71 8.37 -88.34 -0.74 0.97 16 5 S 0.00 -0.04 25.77 -107.50 -2.77 -2.81 16 6 N -0.24 -3.61 12.23 30.68 0.38 -3.23 16 7 N -0.27 -4.25 12.17 32.99 0.40 -3.85 16 8 C 0.19 2.49 7.44 -154.00 -1.15 1.34 16 9 C 0.21 2.81 5.88 -5.19 -0.03 2.78 16 10 N -0.74 -11.75 5.50 -62.49 -0.34 -12.09 16 11 C 0.58 11.51 7.76 -12.42 -0.10 11.42 16 12 O -0.57 -12.61 16.32 5.29 0.09 -12.52 16 13 C -0.29 -6.29 5.89 -104.73 -0.62 -6.91 16 14 C -0.06 -1.33 9.47 -39.61 -0.38 -1.70 16 15 C -0.18 -4.26 8.63 -39.27 -0.34 -4.60 16 16 C 0.13 3.22 5.58 -106.80 -0.60 2.62 16 17 C -0.44 -10.70 9.04 -37.75 -0.34 -11.04 16 18 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.69 5.14 -17.31 -0.09 1.60 16 20 N -0.77 -18.03 10.95 55.56 0.61 -17.42 16 21 Si 0.91 16.98 29.60 -169.99 -5.03 11.95 16 22 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 25 C -0.24 -5.63 9.73 -39.27 -0.38 -6.01 16 26 C -0.02 -0.43 9.52 -39.61 -0.38 -0.81 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.11 0.83 7.91 -51.93 -0.41 0.42 16 31 H 0.11 0.66 7.86 -51.93 -0.41 0.25 16 32 H 0.10 0.63 9.55 96.90 0.93 1.56 16 33 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 34 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.40 6.14 6.47 -40.82 -0.26 5.88 16 36 H 0.09 1.62 6.37 -52.49 -0.33 1.29 16 37 H 0.12 2.94 6.16 -52.48 -0.32 2.62 16 38 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -29.51 362.59 -9.59 -39.10 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.29 Total: 10.89 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -4.77 Total: -10.29 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.72 Total: -41.78 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.77 Total: -2.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.51 -9.59 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270329562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.211 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds