Wall clock time and date at job start Tue Mar 31 2020 16:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47657 * 2 1 4 4 C 1.36536 * 127.13867 * 90.02002 * 3 2 1 5 5 S 1.76199 * 126.48713 * 0.02562 * 4 3 2 6 6 N 1.31287 * 107.02733 * 179.74221 * 4 3 2 7 7 N 1.28526 * 109.85512 * 0.26473 * 6 4 3 8 8 C 1.30296 * 110.07990 * 0.02562 * 7 6 4 9 9 C 1.50696 * 126.33943 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47340 * 89.97576 * 9 8 7 11 11 C 1.34777 * 120.00306 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00173 * 359.97438 * 11 10 9 13 13 C 1.47641 * 119.99906 * 179.97438 * 11 10 9 14 14 C 1.40017 * 119.89768 * 359.72088 * 13 11 10 15 15 C 1.36311 * 120.10479 * 179.75919 * 14 13 11 16 16 C 1.40887 * 119.89308 * 0.51493 * 15 14 13 17 17 C 1.41111 * 120.10344 * 179.71543 * 16 15 14 18 18 H 1.07997 * 119.99911 * 204.64881 * 17 16 15 19 19 C 1.40224 * 119.99802 * 24.65431 * 17 16 15 20 20 N 1.30645 * 120.00599 * 17.86681 * 19 17 16 21 21 Si 1.86801 * 119.99721 * 197.86315 * 19 17 16 22 22 H 1.48499 * 109.47118 * 90.00093 * 21 19 17 23 23 H 1.48503 * 109.46951 * 209.99789 * 21 19 17 24 24 H 1.48499 * 109.47297 * 330.00017 * 21 19 17 25 25 C 1.40892 * 119.79451 * 359.73715 * 16 15 14 26 26 C 1.36316 * 119.88971 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.46509 * 60.00059 * 1 2 3 28 28 H 1.09001 * 109.47484 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46842 * 300.00271 * 1 2 3 30 30 H 1.09007 * 109.47303 * 239.99707 * 2 1 3 31 31 H 1.09005 * 109.47006 * 120.00029 * 2 1 3 32 32 H 1.41002 * 100.00232 * 269.71068 * 5 4 3 33 33 H 1.08998 * 109.47206 * 209.97331 * 9 8 7 34 34 H 1.09002 * 109.47273 * 329.97459 * 9 8 7 35 35 H 0.97008 * 120.00000 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.94477 * 0.02562 * 14 13 11 37 37 H 1.08006 * 120.05641 * 180.23207 * 15 14 13 38 38 H 0.96991 * 120.00498 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.05491 * 179.97438 * 25 16 15 40 40 H 1.07994 * 119.94381 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2937 2.1582 1.0884 5 16 2.1292 1.6895 2.7790 6 7 2.7099 3.3187 0.6370 7 7 2.7056 3.3141 -0.6482 8 6 2.2896 2.1611 -1.0901 9 6 2.1423 1.7588 -2.5349 10 7 3.3943 1.1609 -3.0054 11 6 3.4967 0.7243 -4.2764 12 8 2.5499 0.8262 -5.0324 13 6 4.7586 0.1223 -4.7507 14 6 5.8495 0.0114 -3.8799 15 6 7.0150 -0.5482 -4.3119 16 6 7.1244 -1.0054 -5.6401 17 6 8.3308 -1.5799 -6.0937 18 1 8.5734 -1.5659 -7.1459 19 6 9.2145 -2.1691 -5.1781 20 7 8.7943 -2.5036 -3.9872 21 14 10.9926 -2.4760 -5.6615 22 1 11.8129 -1.2890 -5.3103 23 1 11.5052 -3.6648 -4.9339 24 1 11.0732 -2.7181 -7.1244 25 6 6.0257 -0.8868 -6.5140 26 6 4.8627 -0.3302 -6.0716 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.7993 2.0932 3.0168 33 1 1.3349 1.0327 -2.6294 34 1 1.9117 2.6388 -3.1354 35 1 4.1498 1.0800 -2.4024 36 1 5.7659 0.3658 -2.8632 37 1 7.8547 -0.6368 -3.6385 38 1 9.4057 -2.9108 -3.3538 39 1 6.1051 -1.2355 -7.5331 40 1 4.0201 -0.2385 -6.7409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270329562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:46 Heat of formation + Delta-G solvation = 43.759431 kcal Electronic energy + Delta-G solvation = -24887.032735 eV Core-core repulsion = 21214.426469 eV Total energy + Delta-G solvation = -3672.606266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.27172 -40.81184 -38.95082 -37.06067 -36.03423 -35.67825 -32.77603 -31.76756 -31.68033 -31.29331 -28.65130 -27.10922 -25.33520 -23.86688 -23.64856 -22.82971 -22.05430 -21.36408 -19.44580 -19.35480 -18.67310 -17.84628 -17.65337 -17.23389 -16.85357 -16.30504 -15.93485 -15.78559 -15.71143 -15.29644 -15.05501 -14.57244 -14.37454 -14.28661 -14.13577 -13.88330 -13.66142 -13.40451 -13.19834 -12.87940 -12.85015 -12.64062 -12.60298 -12.38134 -12.33474 -11.77745 -11.77212 -11.40898 -11.37594 -11.13754 -10.95197 -10.47487 -10.27212 -9.58251 -9.47754 -9.42210 -8.80317 -6.48872 -0.18312 0.06555 0.41825 1.09833 1.15461 1.30843 1.38789 1.43464 1.53242 1.67253 2.09065 2.16998 2.35921 2.76657 2.89597 3.42750 3.61412 3.69656 3.88141 4.01681 4.18186 4.24033 4.28123 4.41043 4.45567 4.49592 4.49806 4.70505 4.88004 4.92746 5.02483 5.07100 5.14162 5.28237 5.29033 5.44371 5.58128 5.80374 5.92204 5.99336 6.22337 6.50720 6.54390 6.76791 6.88061 7.26045 7.31243 8.14674 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.002624 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.224079 B =10669.769141 C =11740.240503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 N -0.440 5.440 4 C 0.149 3.851 5 S 0.010 5.990 6 N -0.279 5.279 7 N -0.305 5.305 8 C 0.186 3.814 9 C 0.217 3.783 10 N -0.724 5.724 11 C 0.583 3.417 12 O -0.593 6.593 13 C -0.293 4.293 14 C -0.053 4.053 15 C -0.198 4.198 16 C 0.103 3.897 17 C -0.472 4.472 18 H 0.086 0.914 19 C 0.038 3.962 20 N -0.796 5.796 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.264 1.264 24 H -0.257 1.257 25 C -0.253 4.253 26 C -0.027 4.027 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.405 0.595 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.297 0.703 39 H 0.106 0.894 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.681 0.336 13.881 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.039 4.039 3 N -0.132 5.132 4 C -0.226 4.226 5 S 0.159 5.841 6 N -0.124 5.124 7 N -0.148 5.148 8 C -0.084 4.084 9 C 0.091 3.909 10 N -0.378 5.378 11 C 0.378 3.622 12 O -0.476 6.476 13 C -0.297 4.297 14 C -0.072 4.072 15 C -0.218 4.218 16 C 0.099 3.901 17 C -0.499 4.499 18 H 0.104 0.896 19 C -0.181 4.181 20 N -0.419 5.419 21 Si 0.806 3.194 22 H -0.185 1.185 23 H -0.189 1.189 24 H -0.180 1.180 25 C -0.272 4.272 26 C -0.047 4.047 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.241 0.759 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.684 1.335 14.460 18.638 hybrid contribution -0.106 -0.749 -0.807 1.106 sum -11.789 0.586 13.653 18.048 Atomic orbital electron populations 1.22151 0.91776 1.05440 1.02725 1.22542 0.97395 0.76378 1.07629 1.47420 1.46285 1.14806 1.04680 1.26457 1.08315 0.91721 0.96146 1.87067 1.22844 1.79035 0.95179 1.74768 1.16409 1.18325 1.02872 1.74110 1.18026 1.19042 1.03648 1.25029 1.02144 0.88813 0.92430 1.19471 0.88153 1.00245 0.83030 1.45699 1.15713 1.63670 1.12742 1.18235 0.87329 0.76081 0.80592 1.90643 1.41046 1.59901 1.55998 1.19072 0.94947 1.19120 0.96564 1.20654 0.92688 0.96449 0.97418 1.20986 0.98227 1.04985 0.97572 1.18135 0.92212 0.87416 0.92304 1.20139 1.02312 1.31278 0.96135 0.89585 1.26909 1.05055 0.92230 0.93905 1.69750 1.38831 1.26546 1.06810 0.85125 0.75351 0.78942 0.79973 1.18546 1.18870 1.18033 1.20876 0.94097 1.11768 1.00487 1.20512 0.96446 0.93539 0.94174 0.92386 0.87284 0.91861 0.87405 0.85169 0.90724 0.87704 0.88388 0.75867 0.86777 0.87124 0.89184 0.87624 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 10.24 71.98 0.74 -0.69 16 2 C 0.08 1.00 6.48 86.38 0.56 1.55 16 3 N -0.44 -8.75 2.81 -513.11 -1.44 -10.19 16 4 C 0.15 3.33 8.37 179.55 1.50 4.84 16 5 S 0.01 0.14 25.77 -56.49 -1.46 -1.32 16 6 N -0.28 -8.31 12.23 -56.85 -0.70 -9.00 16 7 N -0.30 -9.49 12.17 -49.53 -0.60 -10.09 16 8 C 0.19 4.68 7.44 137.63 1.02 5.71 16 9 C 0.22 5.48 5.88 85.63 0.50 5.98 16 10 N -0.72 -22.03 5.50 -469.90 -2.58 -24.62 16 11 C 0.58 22.70 7.76 86.73 0.67 23.37 16 12 O -0.59 -25.62 16.32 -3.98 -0.07 -25.69 16 13 C -0.29 -12.75 5.89 -19.93 -0.12 -12.86 16 14 C -0.05 -2.29 9.47 22.25 0.21 -2.07 16 15 C -0.20 -9.68 8.63 22.47 0.19 -9.49 16 16 C 0.10 5.23 5.58 -21.28 -0.12 5.11 16 17 C -0.47 -23.44 9.04 23.46 0.21 -23.22 16 18 H 0.09 4.10 7.91 -2.91 -0.02 4.08 16 19 C 0.04 1.75 5.14 85.35 0.44 2.19 16 20 N -0.80 -37.45 10.95 21.87 0.24 -37.21 16 21 Si 0.99 34.43 29.60 68.60 2.03 36.46 16 22 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 23 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 24 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 25 C -0.25 -12.16 9.73 22.47 0.22 -11.94 16 26 C -0.03 -1.26 9.52 22.25 0.21 -1.05 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 1.38 7.91 -2.38 -0.02 1.36 16 31 H 0.13 1.13 7.86 -2.38 -0.02 1.11 16 32 H 0.13 1.17 9.55 73.80 0.70 1.87 16 33 H 0.11 2.26 7.96 -2.39 -0.02 2.24 16 34 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.41 11.81 6.47 -92.70 -0.60 11.21 16 36 H 0.11 4.15 6.37 -2.91 -0.02 4.14 16 37 H 0.11 5.54 6.16 -2.91 -0.02 5.52 16 38 H 0.30 12.42 8.29 -92.71 -0.77 11.65 16 39 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.11 4.74 7.63 -2.91 -0.02 4.72 16 Total: -1.00 -64.59 362.59 2.89 -61.70 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 1.22 Total: 32.55 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 6.25 Total: -12.59 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -5.08 Total: -91.11 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.07 Total: -25.69 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.46 Total: -1.32 kcal Total: -64.59 2.89 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270329562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.462 kcal (2) G-P(sol) polarization free energy of solvation -64.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds