Wall clock time and date at job start Tue Mar 31 2020 16:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38356 * 127.15566 * 2 1 4 4 C 1.39769 * 126.56093 * 0.02562 * 3 2 1 5 5 H 1.08002 * 120.00327 * 0.31947 * 4 3 2 6 6 C 1.40084 * 119.99833 * 180.31240 * 4 3 2 7 7 N 1.30820 * 119.99993 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46829 * 90.00156 * 8 6 4 10 10 H 1.48499 * 109.46745 * 210.00081 * 8 6 4 11 11 H 1.48500 * 109.47015 * 330.00071 * 8 6 4 12 12 N 1.33095 * 106.86747 * 180.29363 * 3 2 1 13 13 N 1.28513 * 109.75316 * 359.73502 * 12 3 2 14 14 C 1.32393 * 110.20128 * 0.02562 * 13 12 3 15 15 S 1.76195 * 126.25812 * 179.97438 * 14 13 12 16 16 C 1.80996 * 99.99998 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.47276 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99503 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.72626 * 17 16 15 20 20 C 1.46506 * 119.99968 * 180.02562 * 19 17 16 21 21 C 1.50690 * 109.47072 * 179.97438 * 20 19 17 22 22 C 1.38239 * 120.00063 * 269.72535 * 21 20 19 23 23 C 1.38238 * 119.99970 * 179.76784 * 22 21 20 24 24 C 1.38240 * 119.99735 * 0.50550 * 23 22 21 25 25 C 1.38237 * 120.00062 * 359.74724 * 24 23 22 26 26 C 1.38227 * 119.99845 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47178 * 270.16508 * 1 2 3 28 28 H 1.08999 * 109.46882 * 30.16498 * 1 2 3 29 29 H 1.09000 * 109.47514 * 150.16124 * 1 2 3 30 30 H 0.97001 * 119.99493 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47654 * 60.00189 * 16 15 14 32 32 H 1.08998 * 109.47543 * 300.00143 * 16 15 14 33 33 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 34 34 H 1.09004 * 109.46587 * 299.99661 * 20 19 17 35 35 H 1.08998 * 109.47213 * 59.99069 * 20 19 17 36 36 H 1.07997 * 119.99934 * 359.97438 * 22 21 20 37 37 H 1.07998 * 119.99916 * 180.22859 * 23 22 21 38 38 H 1.08002 * 119.99567 * 179.72264 * 24 23 22 39 39 H 1.07999 * 119.99367 * 179.97438 * 25 24 23 40 40 H 1.08009 * 119.99628 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4443 0.0005 5 1 0.8595 2.7005 0.0062 6 6 2.8768 3.4568 -0.0062 7 7 4.1477 3.1465 -0.0134 8 14 2.3531 5.2499 -0.0048 9 1 2.2227 5.7263 1.3956 10 1 3.3741 6.0642 -0.7117 11 1 1.0463 5.3844 -0.6972 12 7 3.5490 0.6412 -0.0065 13 7 3.5370 -0.6439 -0.0049 14 6 2.2903 -1.0894 0.0022 15 16 1.7872 -2.7780 0.0063 16 6 3.4057 -3.5882 -0.0009 17 6 3.2189 -5.0836 0.0021 18 8 2.1015 -5.5551 0.0089 19 7 4.2935 -5.8970 -0.0080 20 6 4.1120 -7.3507 -0.0056 21 6 5.4594 -8.0252 -0.0190 22 6 6.0628 -8.3402 -1.2222 23 6 7.3011 -8.9546 -1.2344 24 6 7.9312 -9.2636 -0.0434 25 6 7.3254 -8.9533 1.1598 26 6 6.0898 -8.3337 1.1720 27 1 -0.3634 0.0030 1.0277 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 4.8180 3.8476 -0.0184 31 1 3.9651 -3.2906 0.8860 32 1 3.9562 -3.2922 -0.8939 33 1 5.1872 -5.5199 -0.0175 34 1 3.5657 -7.6471 0.8899 35 1 3.5484 -7.6479 -0.8900 36 1 5.5684 -8.1032 -2.1526 37 1 7.7742 -9.1973 -2.1745 38 1 8.8966 -9.7476 -0.0530 39 1 7.8176 -9.1951 2.0902 40 1 5.6163 -8.0917 2.1121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279931379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:56 Heat of formation + Delta-G solvation = 57.792169 kcal Electronic energy + Delta-G solvation = -23874.364027 eV Core-core repulsion = 20202.366266 eV Total energy + Delta-G solvation = -3671.997760 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.50361 -40.05471 -39.13640 -35.13050 -33.70157 -33.31536 -31.95505 -31.26889 -29.87163 -29.19775 -26.50740 -26.04131 -25.44017 -22.94617 -21.70927 -21.00479 -20.79082 -20.32784 -17.68230 -17.32118 -16.84550 -16.51065 -15.96342 -15.76087 -15.39154 -15.20766 -15.14968 -14.66997 -14.39489 -13.80360 -13.75336 -13.46198 -13.29235 -13.27917 -12.98865 -12.79019 -12.37840 -12.21161 -12.15696 -11.45935 -11.39535 -11.37703 -11.30637 -10.93673 -10.40988 -10.28195 -10.08163 -9.72556 -9.62792 -9.32041 -9.25357 -9.18085 -8.69944 -8.42016 -8.39109 -6.80876 -6.65686 -4.57544 0.85841 1.03189 1.84707 2.56729 2.79270 2.91254 3.06045 3.09451 3.11424 3.35499 3.57557 3.86978 4.24414 4.29318 4.41192 4.48980 4.64450 4.72561 4.78481 5.00083 5.11753 5.29763 5.32199 5.36429 5.40382 5.58077 5.62283 5.66905 5.67978 5.91361 6.06456 6.07396 6.14365 6.20367 6.21840 6.60480 6.75862 6.88783 7.23745 7.29259 7.48992 7.88623 8.07927 8.17482 8.69762 8.85801 10.26915 10.62429 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.002063 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.173142 B =13569.831630 C =14518.882862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.513 5.513 3 C 0.346 3.654 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.737 5.737 8 Si 0.921 3.079 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.262 1.262 12 N -0.333 5.333 13 N -0.290 5.290 14 C 0.031 3.969 15 S 0.019 5.981 16 C -0.133 4.133 17 C 0.536 3.464 18 O -0.526 6.526 19 N -0.725 5.725 20 C 0.163 3.837 21 C -0.108 4.108 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.100 4.100 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.279 0.721 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.405 0.595 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -19.695 -0.117 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.216 5.216 3 C 0.102 3.898 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.361 5.361 8 Si 0.745 3.255 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.186 1.186 12 N -0.181 5.181 13 N -0.136 5.136 14 C -0.340 4.340 15 S 0.245 5.755 16 C -0.285 4.285 17 C 0.321 3.679 18 O -0.402 6.402 19 N -0.379 5.379 20 C 0.039 3.961 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.140 4.140 24 C -0.132 4.132 25 C -0.140 4.140 26 C -0.118 4.118 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.240 0.760 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.561 -20.492 -0.122 20.800 hybrid contribution 0.152 1.701 0.014 1.708 sum 3.714 -18.791 -0.108 19.155 Atomic orbital electron populations 1.21514 0.78439 1.02774 1.01726 1.46016 1.06126 1.05226 1.64184 1.21629 0.84730 0.88443 0.95012 1.18105 0.94712 0.86442 1.49422 0.89767 1.25803 0.94350 1.01306 0.93292 1.70014 1.00705 1.34973 1.30442 0.86117 0.79410 0.80818 0.79184 1.19372 1.19999 1.18640 1.75420 1.15329 0.97866 1.29471 1.74506 1.15189 1.07732 1.16187 1.25684 0.91723 0.93567 1.23057 1.85040 1.05523 0.89393 1.95579 1.23379 1.02601 0.93519 1.08988 1.19943 0.84586 0.87827 0.75566 1.90728 1.23806 1.76957 1.48721 1.45942 1.09475 1.05929 1.76523 1.20184 0.93275 0.79255 1.03357 1.19899 0.96493 1.00824 0.93668 1.21153 0.95294 0.97783 0.97598 1.21193 0.95350 0.99150 0.98353 1.21244 0.99867 0.99432 0.92631 1.21189 0.95505 0.99111 0.98238 1.21151 0.95166 0.97769 0.97744 0.92470 0.90322 0.91424 0.91001 0.86246 0.86250 0.76003 0.90456 0.90458 0.85704 0.85830 0.85979 0.85830 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 10.87 59.84 0.65 2.52 16 2 N -0.51 -12.54 3.26 -123.18 -0.40 -12.94 16 3 C 0.35 9.71 7.53 -154.81 -1.17 8.54 16 4 C -0.45 -11.84 9.04 -38.32 -0.35 -12.19 16 5 H 0.08 2.02 7.31 -52.49 -0.38 1.64 16 6 C 0.08 1.99 5.50 -17.29 -0.10 1.89 16 7 N -0.74 -20.19 11.94 55.56 0.66 -19.53 16 8 Si 0.92 18.50 29.56 -169.99 -5.03 13.47 16 9 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 10 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 11 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 12 N -0.33 -9.98 10.48 31.26 0.33 -9.65 16 13 N -0.29 -7.85 11.62 30.89 0.36 -7.49 16 14 C 0.03 0.76 8.09 -87.27 -0.71 0.05 16 15 S 0.02 0.37 20.92 -107.50 -2.25 -1.88 16 16 C -0.13 -2.09 5.71 36.01 0.21 -1.89 16 17 C 0.54 7.61 7.85 -10.98 -0.09 7.52 16 18 O -0.53 -9.11 15.86 5.56 0.09 -9.03 16 19 N -0.73 -7.65 5.55 -61.47 -0.34 -7.99 16 20 C 0.16 1.52 5.80 -5.20 -0.03 1.49 16 21 C -0.11 -0.89 5.25 -104.63 -0.55 -1.44 16 22 C -0.10 -0.77 9.70 -39.58 -0.38 -1.15 16 23 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 24 C -0.11 -0.77 10.05 -39.58 -0.40 -1.17 16 25 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 26 C -0.10 -0.77 9.70 -39.59 -0.38 -1.15 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.37 7.54 -51.93 -0.39 0.98 16 29 H 0.07 1.12 7.85 -51.93 -0.41 0.72 16 30 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 31 H 0.12 1.85 8.14 -51.92 -0.42 1.42 16 32 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 33 H 0.41 3.57 8.46 -40.82 -0.35 3.23 16 34 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.08 0.74 8.08 -51.93 -0.42 0.33 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -34.99 366.02 -10.03 -45.02 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.88 Total: 3.99 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -4.08 Total: 0.52 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.61 Total: -57.61 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.25 Total: -1.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.99 -10.03 -45.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279931379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.814 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds