Wall clock time and date at job start Tue Mar 31 2020 16:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38356 * 127.15566 * 2 1 4 4 C 1.39769 * 126.56093 * 0.02562 * 3 2 1 5 5 H 1.08002 * 120.00327 * 0.31947 * 4 3 2 6 6 C 1.40084 * 119.99833 * 180.31240 * 4 3 2 7 7 N 1.30820 * 119.99993 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46829 * 90.00156 * 8 6 4 10 10 H 1.48499 * 109.46745 * 210.00081 * 8 6 4 11 11 H 1.48500 * 109.47015 * 330.00071 * 8 6 4 12 12 N 1.33095 * 106.86747 * 180.29363 * 3 2 1 13 13 N 1.28513 * 109.75316 * 359.73502 * 12 3 2 14 14 C 1.32393 * 110.20128 * 0.02562 * 13 12 3 15 15 S 1.76195 * 126.25812 * 179.97438 * 14 13 12 16 16 C 1.80996 * 99.99998 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.47276 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99503 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.72626 * 17 16 15 20 20 C 1.46506 * 119.99968 * 180.02562 * 19 17 16 21 21 C 1.50690 * 109.47072 * 179.97438 * 20 19 17 22 22 C 1.38239 * 120.00063 * 269.72535 * 21 20 19 23 23 C 1.38238 * 119.99970 * 179.76784 * 22 21 20 24 24 C 1.38240 * 119.99735 * 0.50550 * 23 22 21 25 25 C 1.38237 * 120.00062 * 359.74724 * 24 23 22 26 26 C 1.38227 * 119.99845 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47178 * 270.16508 * 1 2 3 28 28 H 1.08999 * 109.46882 * 30.16498 * 1 2 3 29 29 H 1.09000 * 109.47514 * 150.16124 * 1 2 3 30 30 H 0.97001 * 119.99493 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47654 * 60.00189 * 16 15 14 32 32 H 1.08998 * 109.47543 * 300.00143 * 16 15 14 33 33 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 34 34 H 1.09004 * 109.46587 * 299.99661 * 20 19 17 35 35 H 1.08998 * 109.47213 * 59.99069 * 20 19 17 36 36 H 1.07997 * 119.99934 * 359.97438 * 22 21 20 37 37 H 1.07998 * 119.99916 * 180.22859 * 23 22 21 38 38 H 1.08002 * 119.99567 * 179.72264 * 24 23 22 39 39 H 1.07999 * 119.99367 * 179.97438 * 25 24 23 40 40 H 1.08009 * 119.99628 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4443 0.0005 5 1 0.8595 2.7005 0.0062 6 6 2.8768 3.4568 -0.0062 7 7 4.1477 3.1465 -0.0134 8 14 2.3531 5.2499 -0.0048 9 1 2.2227 5.7263 1.3956 10 1 3.3741 6.0642 -0.7117 11 1 1.0463 5.3844 -0.6972 12 7 3.5490 0.6412 -0.0065 13 7 3.5370 -0.6439 -0.0049 14 6 2.2903 -1.0894 0.0022 15 16 1.7872 -2.7780 0.0063 16 6 3.4057 -3.5882 -0.0009 17 6 3.2189 -5.0836 0.0021 18 8 2.1015 -5.5551 0.0089 19 7 4.2935 -5.8970 -0.0080 20 6 4.1120 -7.3507 -0.0056 21 6 5.4594 -8.0252 -0.0190 22 6 6.0628 -8.3402 -1.2222 23 6 7.3011 -8.9546 -1.2344 24 6 7.9312 -9.2636 -0.0434 25 6 7.3254 -8.9533 1.1598 26 6 6.0898 -8.3337 1.1720 27 1 -0.3634 0.0030 1.0277 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 4.8180 3.8476 -0.0184 31 1 3.9651 -3.2906 0.8860 32 1 3.9562 -3.2922 -0.8939 33 1 5.1872 -5.5199 -0.0175 34 1 3.5657 -7.6471 0.8899 35 1 3.5484 -7.6479 -0.8900 36 1 5.5684 -8.1032 -2.1526 37 1 7.7742 -9.1973 -2.1745 38 1 8.8966 -9.7476 -0.0530 39 1 7.8176 -9.1951 2.0902 40 1 5.6163 -8.0917 2.1121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279931379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:55 Heat of formation + Delta-G solvation = 36.211324 kcal Electronic energy + Delta-G solvation = -23875.299843 eV Core-core repulsion = 20202.366266 eV Total energy + Delta-G solvation = -3672.933576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.44604 -40.98578 -39.93077 -36.07232 -35.61806 -35.14724 -32.82270 -31.80474 -31.38872 -30.75224 -28.23398 -27.42974 -26.74756 -23.48926 -22.80069 -22.60337 -22.23833 -21.72661 -19.28773 -18.62971 -17.87764 -17.70261 -17.26765 -16.97419 -16.73369 -16.51833 -16.10561 -15.97481 -15.83686 -15.20025 -14.94481 -14.45524 -14.42067 -14.20754 -13.92187 -13.87637 -13.78983 -13.47426 -13.36334 -13.13101 -12.93534 -12.76202 -12.05619 -11.99255 -11.92887 -11.88372 -11.66083 -11.44117 -11.28685 -10.58168 -10.37051 -10.32082 -10.21701 -9.83858 -9.78652 -8.54254 -8.53946 -6.57499 0.18411 0.39561 0.48460 1.16973 1.20029 1.39471 1.42745 1.58869 1.62301 2.14743 2.19847 2.44841 2.51370 2.91768 3.34561 3.58830 3.68930 3.91298 4.01991 4.09161 4.14279 4.29332 4.36588 4.37273 4.46032 4.57982 4.62972 4.66666 4.76793 4.87923 4.96536 5.05089 5.14915 5.24109 5.32743 5.53376 5.57645 5.61378 5.63108 6.03319 6.07127 6.22607 6.31007 6.76422 6.92500 6.99568 8.41606 8.63741 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.002063 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.173142 B =13569.831630 C =14518.882862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.521 5.521 3 C 0.317 3.683 4 C -0.471 4.471 5 H 0.103 0.897 6 C 0.028 3.972 7 N -0.787 5.787 8 Si 1.006 2.994 9 H -0.261 1.261 10 H -0.271 1.271 11 H -0.248 1.248 12 N -0.386 5.386 13 N -0.326 5.326 14 C 0.044 3.956 15 S 0.043 5.957 16 C -0.130 4.130 17 C 0.544 3.456 18 O -0.559 6.559 19 N -0.706 5.706 20 C 0.165 3.835 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.109 4.109 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.285 0.715 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.415 0.585 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 -20.294 -0.132 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.222 5.222 3 C 0.071 3.929 4 C -0.511 4.511 5 H 0.121 0.879 6 C -0.192 4.192 7 N -0.412 5.412 8 Si 0.825 3.175 9 H -0.186 1.186 10 H -0.195 1.195 11 H -0.171 1.171 12 N -0.233 5.233 13 N -0.171 5.171 14 C -0.330 4.330 15 S 0.268 5.732 16 C -0.282 4.282 17 C 0.329 3.671 18 O -0.438 6.438 19 N -0.358 5.358 20 C 0.042 3.958 21 C -0.117 4.117 22 C -0.128 4.128 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.147 4.147 26 C -0.128 4.128 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.089 -21.126 -0.138 21.351 hybrid contribution 0.334 1.618 0.023 1.652 sum 3.423 -19.508 -0.115 19.806 Atomic orbital electron populations 1.21858 0.75354 1.04444 1.03382 1.46349 1.08083 1.04410 1.63364 1.22050 0.85110 0.89892 0.95885 1.18618 0.95986 0.86471 1.49994 0.87933 1.26981 0.93943 1.06440 0.91865 1.70152 1.02342 1.36985 1.31721 0.84855 0.79399 0.73728 0.79499 1.18606 1.19527 1.17147 1.75287 1.17224 0.99198 1.31588 1.74380 1.16878 1.07113 1.18716 1.26595 0.91276 0.95922 1.19211 1.85001 1.07518 0.85705 1.94981 1.23458 1.00752 0.94547 1.09462 1.19599 0.84834 0.87139 0.75576 1.90719 1.25070 1.77174 1.50816 1.45846 1.09067 1.06410 1.74521 1.20231 0.94243 0.78054 1.03225 1.19792 0.96042 1.01660 0.94242 1.21312 0.95785 0.98003 0.97668 1.21463 0.95133 0.98778 0.99371 1.21567 1.00628 0.98905 0.92411 1.21459 0.95301 0.98739 0.99245 1.21310 0.95644 0.97993 0.97824 0.90739 0.89155 0.89291 0.90510 0.85875 0.85860 0.74794 0.90579 0.90586 0.85159 0.84161 0.83990 0.84162 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.32 10.87 127.77 1.39 4.70 16 2 N -0.52 -25.46 3.26 -543.63 -1.77 -27.23 16 3 C 0.32 18.15 7.53 133.23 1.00 19.16 16 4 C -0.47 -25.16 9.04 23.09 0.21 -24.96 16 5 H 0.10 4.86 7.31 -2.91 -0.02 4.84 16 6 C 0.03 1.46 5.50 85.29 0.47 1.93 16 7 N -0.79 -44.35 11.94 21.86 0.26 -44.09 16 8 Si 1.01 37.62 29.56 68.60 2.03 39.65 16 9 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 10 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 11 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 12 N -0.39 -23.96 10.48 -55.02 -0.58 -24.54 16 13 N -0.33 -18.14 11.62 -56.17 -0.65 -18.79 16 14 C 0.04 2.11 8.09 179.18 1.45 3.56 16 15 S 0.04 1.61 20.92 -56.49 -1.18 0.43 16 16 C -0.13 -4.03 5.71 71.24 0.41 -3.62 16 17 C 0.54 14.96 7.85 87.66 0.69 15.64 16 18 O -0.56 -18.88 15.86 -3.04 -0.05 -18.93 16 19 N -0.71 -14.13 5.55 -466.79 -2.59 -16.72 16 20 C 0.17 2.93 5.80 85.63 0.50 3.43 16 21 C -0.12 -1.79 5.25 -19.87 -0.10 -1.89 16 22 C -0.11 -1.55 9.70 22.27 0.22 -1.33 16 23 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 24 C -0.12 -1.35 10.05 22.27 0.22 -1.12 16 25 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 26 C -0.11 -1.55 9.70 22.27 0.22 -1.33 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.09 3.01 7.54 -2.39 -0.02 2.99 16 29 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 30 H 0.28 14.44 8.30 -92.71 -0.77 13.67 16 31 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 32 H 0.12 3.76 8.14 -2.40 -0.02 3.74 16 33 H 0.42 6.81 8.46 -92.71 -0.78 6.02 16 34 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 35 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 36 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -77.92 366.02 2.87 -75.05 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.29 Total: 23.73 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 7.11 Total: 11.44 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -5.33 Total: -131.37 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.18 Total: 0.43 kcal Total: -77.92 2.87 -75.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279931379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.263 kcal (2) G-P(sol) polarization free energy of solvation -77.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds