Wall clock time and date at job start Tue Mar 31 2020 16:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38351 * 127.15370 * 2 1 4 4 C 1.39775 * 126.56566 * 0.02562 * 3 2 1 5 5 H 1.08007 * 119.99935 * 0.31784 * 4 3 2 6 6 C 1.40082 * 120.00032 * 180.30880 * 4 3 2 7 7 N 1.30807 * 119.99932 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47183 * 59.99864 * 8 6 4 10 10 H 1.48501 * 109.47155 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46990 * 299.99948 * 8 6 4 12 12 N 1.33096 * 106.86809 * 180.29667 * 3 2 1 13 13 N 1.28515 * 109.74784 * 359.74102 * 12 3 2 14 14 C 1.32386 * 110.20007 * 0.02562 * 13 12 3 15 15 S 1.76206 * 126.25678 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99902 * 0.02587 * 15 14 13 17 17 C 1.53000 * 109.47182 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47194 * 179.97438 * 17 16 15 19 19 O 1.21290 * 119.99920 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00292 * 179.97438 * 18 17 16 21 21 C 1.39923 * 119.99990 * 184.62541 * 20 18 17 22 22 C 1.38874 * 120.06830 * 144.92024 * 21 20 18 23 23 C 1.38108 * 119.93087 * 180.23149 * 22 21 20 24 24 C 1.38282 * 120.06640 * 359.46530 * 23 22 21 25 25 C 1.38280 * 120.14630 * 0.55779 * 24 23 22 26 26 C 1.38116 * 120.06510 * 359.69812 * 25 24 23 27 27 H 1.09003 * 109.46936 * 270.16483 * 1 2 3 28 28 H 1.09005 * 109.46730 * 30.15502 * 1 2 3 29 29 H 1.08994 * 109.47300 * 150.15473 * 1 2 3 30 30 H 0.97005 * 120.00292 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47284 * 59.99977 * 16 15 14 32 32 H 1.08999 * 109.47301 * 299.99991 * 16 15 14 33 33 H 1.08997 * 109.46985 * 60.00612 * 17 16 15 34 34 H 1.08999 * 109.47636 * 299.99974 * 17 16 15 35 35 H 0.97000 * 119.99615 * 4.62658 * 20 18 17 36 36 H 1.08000 * 120.03495 * 359.94990 * 22 21 20 37 37 H 1.07996 * 119.96772 * 179.72197 * 23 22 21 38 38 H 1.08000 * 119.93097 * 180.25273 * 24 23 22 39 39 H 1.07993 * 119.97319 * 179.72260 * 25 24 23 40 40 H 1.08001 * 120.03369 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8595 2.7005 0.0061 6 6 2.8769 3.4568 -0.0061 7 7 4.1476 3.1466 -0.0133 8 14 2.3532 5.2499 -0.0047 9 1 1.5495 5.5299 1.2123 10 1 3.5584 6.1176 -0.0119 11 1 1.5354 5.5276 -1.2127 12 7 3.5490 0.6412 -0.0066 13 7 3.5370 -0.6439 -0.0051 14 6 2.2903 -1.0893 0.0019 15 16 1.7871 -2.7780 0.0058 16 6 3.4056 -3.5882 -0.0015 17 6 3.2160 -5.1064 0.0013 18 6 4.5635 -5.7810 -0.0055 19 8 5.5760 -5.1132 -0.0115 20 7 4.6437 -7.1264 -0.0038 21 6 5.8916 -7.7528 0.0876 22 6 6.0216 -8.9460 0.7862 23 6 7.2556 -9.5594 0.8787 24 6 8.3587 -8.9923 0.2673 25 6 8.2327 -7.8041 -0.4286 26 6 7.0025 -7.1830 -0.5203 27 1 -0.3633 0.0030 1.0277 28 1 -0.3633 0.8887 -0.5163 29 1 -0.3633 -0.8913 -0.5114 30 1 4.8181 3.8476 -0.0175 31 1 3.9650 -3.2907 0.8855 32 1 3.9561 -3.2922 -0.8945 33 1 2.6566 -5.4043 -0.8855 34 1 2.6657 -5.4023 0.8945 35 1 3.8363 -7.6604 -0.0661 36 1 5.1596 -9.3915 1.2604 37 1 7.3583 -10.4850 1.4256 38 1 9.3218 -9.4760 0.3376 39 1 9.0969 -7.3614 -0.9012 40 1 6.9046 -6.2552 -1.0644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279967571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:45 Heat of formation + Delta-G solvation = 58.800478 kcal Electronic energy + Delta-G solvation = -24020.349262 eV Core-core repulsion = 20348.395225 eV Total energy + Delta-G solvation = -3671.954037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71509 -40.49046 -38.64225 -34.99281 -33.69548 -33.39755 -32.95295 -31.10292 -29.73257 -29.29803 -26.54005 -25.71003 -24.82708 -23.05551 -22.26900 -20.86044 -20.60196 -20.17432 -18.06511 -17.41095 -17.33902 -16.43973 -16.04968 -15.96829 -15.41023 -14.95676 -14.80976 -14.63122 -14.39183 -14.05134 -13.83274 -13.49736 -13.34289 -12.92327 -12.80884 -12.34351 -12.30909 -12.18153 -11.92339 -11.49794 -11.48093 -11.36972 -11.26724 -10.92299 -10.57644 -10.41620 -10.26389 -9.92752 -9.69226 -9.60103 -9.12505 -8.69124 -8.43111 -8.37320 -8.35896 -6.85964 -6.63374 -4.56811 1.05385 1.20670 1.91961 2.41775 2.75170 2.92154 2.93752 3.06730 3.09217 3.37206 3.61986 3.87917 4.24240 4.44454 4.47401 4.67253 4.74475 4.83094 4.93664 4.96087 5.19853 5.29676 5.33847 5.36982 5.41515 5.54492 5.81279 5.81725 5.88401 6.03472 6.09369 6.13090 6.25400 6.30506 6.37515 6.78304 6.83762 6.89451 7.11303 7.25317 7.49314 7.90376 7.91785 8.18179 8.71004 8.86806 10.29052 10.65966 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002085 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.896824 B =13423.758374 C =14492.500268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.516 5.516 3 C 0.346 3.654 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.077 3.923 7 N -0.736 5.736 8 Si 0.921 3.079 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.333 5.333 13 N -0.280 5.280 14 C 0.045 3.955 15 S -0.059 6.059 16 C -0.078 4.078 17 C -0.123 4.123 18 C 0.518 3.482 19 O -0.505 6.505 20 N -0.679 5.679 21 C 0.147 3.853 22 C -0.148 4.148 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.102 4.102 26 C -0.121 4.121 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.280 0.720 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.411 0.589 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -21.947 -0.024 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.219 5.219 3 C 0.102 3.898 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.359 5.359 8 Si 0.745 3.255 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.190 1.190 12 N -0.180 5.180 13 N -0.126 5.126 14 C -0.326 4.326 15 S 0.169 5.831 16 C -0.227 4.227 17 C -0.165 4.165 18 C 0.304 3.696 19 O -0.378 6.378 20 N -0.325 5.325 21 C 0.052 3.948 22 C -0.168 4.168 23 C -0.123 4.123 24 C -0.157 4.157 25 C -0.120 4.120 26 C -0.141 4.141 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.247 0.753 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.620 -21.821 -0.025 21.830 hybrid contribution -0.957 1.222 0.052 1.553 sum -1.577 -20.599 0.027 20.659 Atomic orbital electron populations 1.21485 0.78572 1.02651 1.01581 1.46032 1.06042 1.05298 1.64489 1.21634 0.84785 0.88411 0.94955 1.18063 0.94654 0.86437 1.49556 0.89827 1.25806 0.94349 1.01306 0.93360 1.70001 1.00714 1.35144 1.30068 0.86172 0.78962 0.80649 0.79712 1.18972 1.20068 1.18972 1.75485 1.15243 0.97844 1.29451 1.74589 1.15089 1.07554 1.15330 1.25174 0.91546 0.92277 1.23641 1.84090 1.10538 0.92625 1.95879 1.22980 0.97605 0.93578 1.08549 1.21397 0.94493 0.94934 1.05637 1.20817 0.92116 0.81361 0.75339 1.90782 1.37211 1.63634 1.46136 1.43568 1.07820 1.07100 1.73965 1.17795 0.85943 0.93665 0.97350 1.20901 0.98582 0.96587 1.00771 1.20923 0.92184 0.99795 0.99381 1.21151 0.98770 0.96473 0.99327 1.21118 0.97246 0.95056 0.98603 1.21393 0.91990 1.01173 0.99565 0.92601 0.90387 0.91565 0.90874 0.88288 0.88289 0.87681 0.87645 0.75320 0.85786 0.85809 0.86077 0.85679 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 10.87 59.85 0.65 2.51 16 2 N -0.52 -12.62 3.26 -123.17 -0.40 -13.02 16 3 C 0.35 9.85 7.53 -154.81 -1.17 8.68 16 4 C -0.45 -11.96 9.04 -38.32 -0.35 -12.31 16 5 H 0.08 2.01 7.31 -52.48 -0.38 1.63 16 6 C 0.08 2.01 5.50 -17.30 -0.10 1.91 16 7 N -0.74 -20.57 11.94 55.56 0.66 -19.91 16 8 Si 0.92 18.71 29.56 -169.99 -5.03 13.68 16 9 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 10 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 12 N -0.33 -10.26 10.48 31.26 0.33 -9.93 16 13 N -0.28 -7.93 11.62 30.89 0.36 -7.57 16 14 C 0.05 1.11 8.09 -87.29 -0.71 0.40 16 15 S -0.06 -1.02 21.78 -107.50 -2.34 -3.37 16 16 C -0.08 -1.25 4.51 37.16 0.17 -1.08 16 17 C -0.12 -1.29 5.70 -27.88 -0.16 -1.45 16 18 C 0.52 6.28 7.67 -10.98 -0.08 6.20 16 19 O -0.50 -8.46 13.42 5.55 0.07 -8.39 16 20 N -0.68 -6.18 5.34 -9.86 -0.05 -6.23 16 21 C 0.15 1.56 6.30 -83.70 -0.53 1.03 16 22 C -0.15 -1.27 9.97 -39.39 -0.39 -1.66 16 23 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 24 C -0.14 -1.20 10.04 -39.55 -0.40 -1.60 16 25 C -0.10 -1.04 10.04 -39.61 -0.40 -1.43 16 26 C -0.12 -1.46 8.70 -39.39 -0.34 -1.81 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.34 7.54 -51.93 -0.39 0.94 16 29 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 30 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 31 H 0.10 1.83 8.10 -51.91 -0.42 1.41 16 32 H 0.10 1.81 8.10 -51.92 -0.42 1.39 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.41 2.16 8.82 -40.82 -0.36 1.80 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.14 1.95 6.23 -52.49 -0.33 1.62 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -36.78 361.61 -9.94 -46.73 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.80 Total: 4.40 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.19 Total: -1.85 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.90 Total: -56.66 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.39 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.34 Total: -3.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.78 -9.94 -46.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279967571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.529 kcal (2) G-P(sol) polarization free energy of solvation -36.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds