Wall clock time and date at job start Tue Mar 31 2020 16:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38351 * 127.15370 * 2 1 4 4 C 1.39775 * 126.56566 * 0.02562 * 3 2 1 5 5 H 1.08007 * 119.99935 * 0.31784 * 4 3 2 6 6 C 1.40082 * 120.00032 * 180.30880 * 4 3 2 7 7 N 1.30807 * 119.99932 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47183 * 59.99864 * 8 6 4 10 10 H 1.48501 * 109.47155 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46990 * 299.99948 * 8 6 4 12 12 N 1.33096 * 106.86809 * 180.29667 * 3 2 1 13 13 N 1.28515 * 109.74784 * 359.74102 * 12 3 2 14 14 C 1.32386 * 110.20007 * 0.02562 * 13 12 3 15 15 S 1.76206 * 126.25678 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99902 * 0.02587 * 15 14 13 17 17 C 1.53000 * 109.47182 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47194 * 179.97438 * 17 16 15 19 19 O 1.21290 * 119.99920 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00292 * 179.97438 * 18 17 16 21 21 C 1.39923 * 119.99990 * 184.62541 * 20 18 17 22 22 C 1.38874 * 120.06830 * 144.92024 * 21 20 18 23 23 C 1.38108 * 119.93087 * 180.23149 * 22 21 20 24 24 C 1.38282 * 120.06640 * 359.46530 * 23 22 21 25 25 C 1.38280 * 120.14630 * 0.55779 * 24 23 22 26 26 C 1.38116 * 120.06510 * 359.69812 * 25 24 23 27 27 H 1.09003 * 109.46936 * 270.16483 * 1 2 3 28 28 H 1.09005 * 109.46730 * 30.15502 * 1 2 3 29 29 H 1.08994 * 109.47300 * 150.15473 * 1 2 3 30 30 H 0.97005 * 120.00292 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47284 * 59.99977 * 16 15 14 32 32 H 1.08999 * 109.47301 * 299.99991 * 16 15 14 33 33 H 1.08997 * 109.46985 * 60.00612 * 17 16 15 34 34 H 1.08999 * 109.47636 * 299.99974 * 17 16 15 35 35 H 0.97000 * 119.99615 * 4.62658 * 20 18 17 36 36 H 1.08000 * 120.03495 * 359.94990 * 22 21 20 37 37 H 1.07996 * 119.96772 * 179.72197 * 23 22 21 38 38 H 1.08000 * 119.93097 * 180.25273 * 24 23 22 39 39 H 1.07993 * 119.97319 * 179.72260 * 25 24 23 40 40 H 1.08001 * 120.03369 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8595 2.7005 0.0061 6 6 2.8769 3.4568 -0.0061 7 7 4.1476 3.1466 -0.0133 8 14 2.3532 5.2499 -0.0047 9 1 1.5495 5.5299 1.2123 10 1 3.5584 6.1176 -0.0119 11 1 1.5354 5.5276 -1.2127 12 7 3.5490 0.6412 -0.0066 13 7 3.5370 -0.6439 -0.0051 14 6 2.2903 -1.0893 0.0019 15 16 1.7871 -2.7780 0.0058 16 6 3.4056 -3.5882 -0.0015 17 6 3.2160 -5.1064 0.0013 18 6 4.5635 -5.7810 -0.0055 19 8 5.5760 -5.1132 -0.0115 20 7 4.6437 -7.1264 -0.0038 21 6 5.8916 -7.7528 0.0876 22 6 6.0216 -8.9460 0.7862 23 6 7.2556 -9.5594 0.8787 24 6 8.3587 -8.9923 0.2673 25 6 8.2327 -7.8041 -0.4286 26 6 7.0025 -7.1830 -0.5203 27 1 -0.3633 0.0030 1.0277 28 1 -0.3633 0.8887 -0.5163 29 1 -0.3633 -0.8913 -0.5114 30 1 4.8181 3.8476 -0.0175 31 1 3.9650 -3.2907 0.8855 32 1 3.9561 -3.2922 -0.8945 33 1 2.6566 -5.4043 -0.8855 34 1 2.6657 -5.4023 0.8945 35 1 3.8363 -7.6604 -0.0661 36 1 5.1596 -9.3915 1.2604 37 1 7.3583 -10.4850 1.4256 38 1 9.3218 -9.4760 0.3376 39 1 9.0969 -7.3614 -0.9012 40 1 6.9046 -6.2552 -1.0644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279967571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:44 Heat of formation + Delta-G solvation = 34.647401 kcal Electronic energy + Delta-G solvation = -24021.396618 eV Core-core repulsion = 20348.395225 eV Total energy + Delta-G solvation = -3673.001393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46630 -41.59604 -39.46433 -35.86401 -35.64096 -35.19253 -34.10766 -31.81894 -31.33842 -30.51163 -28.29653 -27.48259 -26.02256 -23.82775 -23.13987 -22.80050 -22.26959 -21.28345 -19.27343 -18.86596 -18.36885 -17.72069 -17.22546 -17.16218 -16.93271 -16.53430 -16.20984 -15.82664 -15.61605 -15.17126 -14.91629 -14.85051 -14.29437 -14.13878 -13.95291 -13.77665 -13.75120 -13.47376 -13.09886 -12.94437 -12.76384 -12.65840 -12.50718 -12.18649 -12.04274 -11.84197 -11.67191 -11.43555 -11.40649 -10.90946 -10.58236 -10.36758 -10.29448 -9.85963 -9.14189 -8.55057 -8.54625 -6.60382 0.28790 0.40228 0.47183 1.16375 1.19725 1.40417 1.51472 1.56617 1.61581 2.07159 2.18135 2.44070 2.51411 2.89300 3.33342 3.48837 3.83538 3.88981 4.06165 4.08640 4.09035 4.31608 4.44644 4.46770 4.53574 4.61628 4.62852 4.65023 4.68232 4.88394 4.92761 4.95965 5.12115 5.30700 5.37327 5.40325 5.54975 5.56439 5.63664 6.03315 6.10531 6.20826 6.38526 6.74395 6.91994 7.09437 8.40350 8.63965 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002085 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.896824 B =13423.758374 C =14492.500268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.521 5.521 3 C 0.316 3.684 4 C -0.470 4.470 5 H 0.106 0.894 6 C 0.025 3.975 7 N -0.790 5.790 8 Si 1.009 2.991 9 H -0.252 1.252 10 H -0.274 1.274 11 H -0.252 1.252 12 N -0.393 5.393 13 N -0.335 5.335 14 C 0.050 3.950 15 S 0.022 5.978 16 C -0.080 4.080 17 C -0.109 4.109 18 C 0.516 3.484 19 O -0.563 6.563 20 N -0.658 5.658 21 C 0.126 3.874 22 C -0.142 4.142 23 C -0.103 4.103 24 C -0.139 4.139 25 C -0.118 4.118 26 C -0.152 4.152 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.284 0.716 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.432 0.568 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 -24.336 0.700 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.223 5.223 3 C 0.069 3.931 4 C -0.511 4.511 5 H 0.124 0.876 6 C -0.195 4.195 7 N -0.415 5.415 8 Si 0.828 3.172 9 H -0.176 1.176 10 H -0.198 1.198 11 H -0.175 1.175 12 N -0.239 5.239 13 N -0.180 5.180 14 C -0.324 4.324 15 S 0.249 5.751 16 C -0.230 4.230 17 C -0.150 4.150 18 C 0.304 3.696 19 O -0.440 6.440 20 N -0.305 5.305 21 C 0.032 3.968 22 C -0.162 4.162 23 C -0.122 4.122 24 C -0.158 4.158 25 C -0.136 4.136 26 C -0.173 4.173 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.272 0.728 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.163 0.837 39 H 0.147 0.853 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.740 -24.272 0.695 24.568 hybrid contribution -0.023 1.682 -0.166 1.691 sum -3.763 -22.589 0.529 22.907 Atomic orbital electron populations 1.21887 0.75012 1.04644 1.03448 1.46390 1.08187 1.04249 1.63492 1.22088 0.85108 0.90062 0.95818 1.18611 0.96044 0.86354 1.50046 0.87618 1.27067 0.93886 1.06745 0.91810 1.70173 1.02497 1.37122 1.31756 0.84871 0.78641 0.73249 0.80477 1.17593 1.19816 1.17542 1.75328 1.17600 0.99170 1.31796 1.74468 1.17590 1.07179 1.18736 1.26514 0.91012 0.95929 1.18943 1.83646 1.09836 0.86684 1.94932 1.22998 0.96690 0.97587 1.05739 1.21392 0.94257 0.90281 1.09046 1.21091 0.91893 0.82166 0.74498 1.90785 1.39116 1.65070 1.49023 1.43328 1.08466 1.06160 1.72534 1.17996 0.85883 0.94691 0.98228 1.21252 1.00031 0.95320 0.99616 1.21384 0.91588 1.00594 0.98590 1.21485 1.00356 0.95611 0.98326 1.21288 0.96824 0.96082 0.99454 1.21340 0.93861 1.00878 1.01194 0.90673 0.89336 0.88710 0.90579 0.91310 0.91223 0.84082 0.84097 0.72804 0.82690 0.82565 0.83687 0.85296 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.18 10.87 127.77 1.39 4.57 16 2 N -0.52 -25.59 3.26 -543.61 -1.77 -27.36 16 3 C 0.32 18.58 7.53 133.23 1.00 19.59 16 4 C -0.47 -25.66 9.04 23.09 0.21 -25.45 16 5 H 0.11 5.03 7.31 -2.91 -0.02 5.01 16 6 C 0.03 1.34 5.50 85.29 0.47 1.81 16 7 N -0.79 -46.43 11.94 21.85 0.26 -46.17 16 8 Si 1.01 38.52 29.56 68.60 2.03 40.55 16 9 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 10 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 12 N -0.39 -25.67 10.48 -55.02 -0.58 -26.24 16 13 N -0.34 -20.09 11.62 -56.18 -0.65 -20.74 16 14 C 0.05 2.47 8.09 179.18 1.45 3.91 16 15 S 0.02 0.74 21.78 -56.49 -1.23 -0.49 16 16 C -0.08 -2.60 4.51 71.98 0.32 -2.28 16 17 C -0.11 -2.06 5.70 29.85 0.17 -1.89 16 18 C 0.52 12.46 7.67 87.66 0.67 13.13 16 19 O -0.56 -20.27 13.42 -3.06 -0.04 -20.31 16 20 N -0.66 -11.05 5.34 -303.50 -1.62 -12.67 16 21 C 0.13 2.60 6.30 38.15 0.24 2.84 16 22 C -0.14 -2.06 9.97 22.39 0.22 -1.84 16 23 C -0.10 -1.37 10.04 22.25 0.22 -1.14 16 24 C -0.14 -2.20 10.04 22.29 0.22 -1.97 16 25 C -0.12 -2.49 10.04 22.25 0.22 -2.27 16 26 C -0.15 -3.92 8.70 22.39 0.19 -3.73 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.09 2.85 7.54 -2.38 -0.02 2.83 16 29 H 0.09 2.68 7.84 -2.39 -0.02 2.66 16 30 H 0.28 15.12 8.30 -92.70 -0.77 14.35 16 31 H 0.07 2.67 8.10 -2.39 -0.02 2.65 16 32 H 0.07 2.69 8.10 -2.40 -0.02 2.67 16 33 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.43 3.19 8.82 -92.71 -0.82 2.37 16 36 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 40 H 0.11 3.44 6.23 -2.91 -0.02 3.42 16 Total: -1.00 -90.06 361.61 3.68 -86.38 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.27 Total: 21.77 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 7.02 Total: 5.29 kcal Atomic # 7 Polarization: -128.82 SS G_CDS: -4.36 Total: -133.18 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.04 Total: -20.31 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -1.23 Total: -0.49 kcal Total: -90.06 3.68 -86.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279967571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.023 kcal (2) G-P(sol) polarization free energy of solvation -90.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds