Wall clock time and date at job start Tue Mar 31 2020 16:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47162 * 2 1 4 4 C 1.46504 * 119.99505 * 269.99675 * 3 2 1 5 5 C 1.50695 * 109.46733 * 269.99557 * 4 3 2 6 6 H 1.07996 * 120.00709 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99397 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00148 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99500 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47278 * 90.00065 * 9 7 5 11 11 H 1.48506 * 109.46859 * 209.99896 * 9 7 5 12 12 H 1.48501 * 109.47057 * 329.99691 * 9 7 5 13 13 C 1.34774 * 120.00138 * 89.99225 * 3 2 1 14 14 O 1.21277 * 119.99949 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00113 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.47315 * 179.97438 * 15 13 3 17 17 C 1.35762 * 119.62393 * 270.02273 * 16 15 13 18 18 C 1.35354 * 120.70391 * 179.97438 * 17 16 15 19 19 C 1.40197 * 119.94534 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.36415 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.47029 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47559 * 299.99755 * 20 19 18 23 23 F 1.39901 * 109.47269 * 59.99864 * 20 19 18 24 24 C 1.36396 * 119.26438 * 359.73962 * 19 18 17 25 25 C 1.34662 * 119.62692 * 89.99403 * 16 15 13 26 26 O 1.22063 * 119.98236 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47604 * 300.00277 * 1 2 3 29 29 H 1.08996 * 109.46948 * 60.00673 * 1 2 3 30 30 H 1.08994 * 109.47518 * 239.99197 * 2 1 3 31 31 H 1.09004 * 109.46661 * 119.99486 * 2 1 3 32 32 H 1.09000 * 109.46891 * 29.99925 * 4 3 2 33 33 H 1.08999 * 109.46478 * 149.99603 * 4 3 2 34 34 H 0.97001 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47441 * 59.99682 * 15 13 3 36 36 H 1.09000 * 109.47213 * 299.99498 * 15 13 3 37 37 H 1.07997 * 119.64966 * 359.97438 * 17 16 15 38 38 H 1.07998 * 120.02791 * 180.02562 * 18 17 16 39 39 H 1.08004 * 120.34796 * 180.25117 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7036 6 1 4.3427 1.2302 -1.0960 7 6 4.1495 2.3903 -2.8774 8 7 3.3495 3.1263 -3.6177 9 14 5.9136 2.0962 -3.4168 10 1 5.9764 0.8757 -4.2603 11 1 6.3931 3.2638 -4.1992 12 1 6.7736 1.9155 -2.2198 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9921 1.3062 2.4723 16 7 2.3097 2.2036 3.5858 17 6 3.5680 2.2217 4.0952 18 6 3.8857 3.0426 5.1234 19 6 2.9098 3.8861 5.6726 20 6 3.2533 4.8043 6.8172 21 9 2.1195 5.5378 7.1829 22 9 3.6905 4.0459 7.9084 23 9 4.2687 5.6819 6.4224 24 6 1.6477 3.8708 5.1556 25 6 1.3505 3.0017 4.0920 26 8 0.2238 2.9741 3.6232 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6875 -2.0284 33 1 2.0955 3.1409 -1.1385 34 1 3.6758 3.5173 -4.4432 35 1 2.6226 0.4189 2.5300 36 1 0.9442 1.0117 2.5302 37 1 4.3236 1.5741 3.6755 38 1 4.8902 3.0483 5.5199 39 1 0.8835 4.5164 5.5626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283013805.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:07 Heat of formation + Delta-G solvation = -177.521058 kcal Electronic energy + Delta-G solvation = -28768.295680 eV Core-core repulsion = 24069.191610 eV Total energy + Delta-G solvation = -4699.104070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.42302 -47.93822 -47.87155 -41.68027 -39.07429 -37.17490 -35.62427 -35.02819 -32.89550 -30.48672 -30.21754 -29.43818 -27.40995 -26.03950 -24.01738 -23.17654 -22.99542 -22.08873 -19.00033 -18.95500 -18.74441 -18.61860 -17.45702 -17.32828 -16.93728 -16.47954 -15.95902 -15.43110 -15.16090 -14.81650 -14.75761 -14.71548 -14.31707 -14.29395 -14.25411 -14.02110 -13.96429 -13.64623 -13.53672 -13.26943 -12.80870 -12.41233 -12.33812 -12.23518 -12.09875 -11.95831 -11.68495 -11.28859 -11.01903 -10.85000 -10.80800 -10.63103 -10.23254 -10.20777 -9.74673 -9.19145 -8.51683 -8.20286 -7.84766 -6.12308 -4.18135 0.26985 1.52032 2.25006 2.37822 3.10033 3.23094 3.23867 3.31367 3.34076 3.37145 3.72039 3.75671 4.13280 4.35579 4.36297 4.45102 4.75237 4.77911 4.83642 4.97942 5.15042 5.22281 5.23163 5.36175 5.51767 5.63860 5.67300 5.72948 5.92510 6.11552 6.13683 6.42041 6.80799 6.91205 7.33456 7.38406 7.78258 7.82604 8.12538 8.19938 8.72519 8.88793 9.47051 10.95876 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.003202 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.479644 B = 8743.281677 C = 9864.871987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.494 3.506 14 O -0.528 6.528 15 C 0.064 3.936 16 N -0.470 5.470 17 C 0.169 3.831 18 C -0.219 4.219 19 C -0.074 4.074 20 C 0.508 3.492 21 F -0.174 7.174 22 F -0.172 7.172 23 F -0.170 7.170 24 C -0.177 4.177 25 C 0.523 3.477 26 O -0.531 6.531 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 -5.890 19.520 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.278 3.722 14 O -0.404 6.404 15 C -0.061 4.061 16 N -0.179 5.179 17 C 0.040 3.960 18 C -0.242 4.242 19 C -0.079 4.079 20 C 0.453 3.547 21 F -0.155 7.155 22 F -0.154 7.154 23 F -0.151 7.151 24 C -0.199 4.199 25 C 0.323 3.677 26 O -0.411 6.411 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.190 0.810 38 H 0.172 0.828 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.296 -5.183 18.996 19.734 hybrid contribution 1.156 0.035 -0.284 1.191 sum -0.140 -5.149 18.712 19.408 Atomic orbital electron populations 1.22247 0.96382 1.01680 1.02791 1.21502 0.93892 0.83831 1.02839 1.48250 1.63102 1.13380 1.07414 1.19328 0.96457 0.93695 0.77675 1.21379 0.96762 1.32264 1.06477 0.92451 1.24945 0.97927 0.94814 0.96364 1.69929 1.35745 1.33090 1.14296 0.86485 0.84477 0.77759 0.78609 1.20584 1.21036 1.19922 1.20200 0.79641 0.87353 0.85028 1.90736 1.45523 1.17483 1.86683 1.22136 1.06079 0.92607 0.85246 1.45181 1.09991 1.34397 1.28306 1.21923 0.86086 0.96291 0.91672 1.20118 1.00655 1.01554 1.01877 1.20303 0.96045 0.96490 0.95080 1.18251 0.74720 0.79410 0.82283 1.93195 1.51184 1.78641 1.92460 1.93227 1.89728 1.75711 1.56700 1.93252 1.60627 1.70523 1.90675 1.22168 0.97166 1.02439 0.98154 1.16750 0.84985 0.81435 0.84506 1.91002 1.20197 1.67798 1.62133 0.91903 0.92784 0.91800 0.89423 0.91862 0.94713 0.93848 0.92592 0.86225 0.85472 0.80960 0.82766 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.10 1.47 5.93 -4.04 -0.02 1.45 16 3 N -0.59 -11.62 2.46 -175.06 -0.43 -12.05 16 4 C 0.25 6.24 5.16 -5.19 -0.03 6.21 16 5 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.49 9.60 7.74 -10.99 -0.09 9.51 16 14 O -0.53 -12.87 16.01 5.56 0.09 -12.78 16 15 C 0.06 0.86 4.37 -5.20 -0.02 0.83 16 16 N -0.47 -6.40 2.07 -121.07 -0.25 -6.65 16 17 C 0.17 1.77 10.28 -16.84 -0.17 1.59 16 18 C -0.22 -2.17 9.63 -39.87 -0.38 -2.55 16 19 C -0.07 -0.83 5.37 -104.55 -0.56 -1.40 16 20 C 0.51 5.33 3.33 36.00 0.12 5.45 16 21 F -0.17 -1.88 16.00 2.25 0.04 -1.84 16 22 F -0.17 -1.70 17.25 2.25 0.04 -1.66 16 23 F -0.17 -1.91 17.25 2.25 0.04 -1.87 16 24 C -0.18 -2.31 9.38 -39.38 -0.37 -2.68 16 25 C 0.52 8.22 7.40 -15.45 -0.11 8.10 16 26 O -0.53 -10.08 16.64 4.86 0.08 -10.00 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.69 7.22 -51.93 -0.38 0.32 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 1.06 7.27 -51.93 -0.38 0.68 16 36 H 0.13 1.62 6.43 -51.93 -0.33 1.28 16 37 H 0.17 1.23 8.04 -52.49 -0.42 0.81 16 38 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.16 1.93 7.18 -52.48 -0.38 1.55 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -35.36 352.10 -5.31 -40.68 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.26 Total: -1.60 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -1.68 Total: 11.63 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.06 Total: -43.99 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.11 Total: -5.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.36 -5.31 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283013805.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.844 kcal (2) G-P(sol) polarization free energy of solvation -35.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds