Wall clock time and date at job start Tue Mar 31 2020 16:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47162 * 2 1 4 4 C 1.46504 * 119.99505 * 269.99675 * 3 2 1 5 5 C 1.50695 * 109.46733 * 269.99557 * 4 3 2 6 6 H 1.07996 * 120.00709 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99397 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00148 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99500 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47278 * 90.00065 * 9 7 5 11 11 H 1.48506 * 109.46859 * 209.99896 * 9 7 5 12 12 H 1.48501 * 109.47057 * 329.99691 * 9 7 5 13 13 C 1.34774 * 120.00138 * 89.99225 * 3 2 1 14 14 O 1.21277 * 119.99949 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00113 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.47315 * 179.97438 * 15 13 3 17 17 C 1.35762 * 119.62393 * 270.02273 * 16 15 13 18 18 C 1.35354 * 120.70391 * 179.97438 * 17 16 15 19 19 C 1.40197 * 119.94534 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.36415 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.47029 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47559 * 299.99755 * 20 19 18 23 23 F 1.39901 * 109.47269 * 59.99864 * 20 19 18 24 24 C 1.36396 * 119.26438 * 359.73962 * 19 18 17 25 25 C 1.34662 * 119.62692 * 89.99403 * 16 15 13 26 26 O 1.22063 * 119.98236 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47604 * 300.00277 * 1 2 3 29 29 H 1.08996 * 109.46948 * 60.00673 * 1 2 3 30 30 H 1.08994 * 109.47518 * 239.99197 * 2 1 3 31 31 H 1.09004 * 109.46661 * 119.99486 * 2 1 3 32 32 H 1.09000 * 109.46891 * 29.99925 * 4 3 2 33 33 H 1.08999 * 109.46478 * 149.99603 * 4 3 2 34 34 H 0.97001 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47441 * 59.99682 * 15 13 3 36 36 H 1.09000 * 109.47213 * 299.99498 * 15 13 3 37 37 H 1.07997 * 119.64966 * 359.97438 * 17 16 15 38 38 H 1.07998 * 120.02791 * 180.02562 * 18 17 16 39 39 H 1.08004 * 120.34796 * 180.25117 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7036 6 1 4.3427 1.2302 -1.0960 7 6 4.1495 2.3903 -2.8774 8 7 3.3495 3.1263 -3.6177 9 14 5.9136 2.0962 -3.4168 10 1 5.9764 0.8757 -4.2603 11 1 6.3931 3.2638 -4.1992 12 1 6.7736 1.9155 -2.2198 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9921 1.3062 2.4723 16 7 2.3097 2.2036 3.5858 17 6 3.5680 2.2217 4.0952 18 6 3.8857 3.0426 5.1234 19 6 2.9098 3.8861 5.6726 20 6 3.2533 4.8043 6.8172 21 9 2.1195 5.5378 7.1829 22 9 3.6905 4.0459 7.9084 23 9 4.2687 5.6819 6.4224 24 6 1.6477 3.8708 5.1556 25 6 1.3505 3.0017 4.0920 26 8 0.2238 2.9741 3.6232 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6875 -2.0284 33 1 2.0955 3.1409 -1.1385 34 1 3.6758 3.5173 -4.4432 35 1 2.6226 0.4189 2.5300 36 1 0.9442 1.0117 2.5302 37 1 4.3236 1.5741 3.6755 38 1 4.8902 3.0483 5.5199 39 1 0.8835 4.5164 5.5626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283013805.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:06 Heat of formation + Delta-G solvation = -200.407515 kcal Electronic energy + Delta-G solvation = -28769.288111 eV Core-core repulsion = 24069.191610 eV Total energy + Delta-G solvation = -4700.096501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.28115 -48.79703 -48.72516 -42.74335 -40.56906 -38.28512 -37.11200 -36.15226 -34.90272 -31.76673 -31.36998 -30.61572 -28.94752 -27.31854 -24.94895 -24.92113 -24.21431 -23.21510 -20.39910 -19.85149 -19.59802 -19.56683 -18.71621 -18.52359 -18.28915 -18.18087 -17.08647 -16.83167 -16.49638 -16.30558 -15.89243 -15.67102 -15.59813 -15.20330 -15.15881 -14.87324 -14.83585 -14.80300 -14.65442 -14.58032 -14.42702 -13.70286 -13.51394 -13.29077 -13.25567 -13.21421 -13.14052 -12.95521 -12.69448 -12.50230 -12.17538 -11.94235 -11.84335 -11.72263 -11.37907 -10.70445 -10.64678 -9.52719 -9.21180 -8.22622 -6.38058 -0.68521 0.59114 1.26472 1.38567 1.41598 1.45751 1.51507 1.64928 2.11977 2.34753 2.46653 2.50283 2.86110 3.07976 3.27136 3.45584 3.52377 3.59703 3.88433 3.94201 4.05365 4.15142 4.21419 4.40653 4.44590 4.61843 4.76020 4.86777 4.91042 4.96003 5.02626 5.19223 5.27025 5.38150 5.54932 5.79773 5.80394 6.03302 6.60581 6.70868 6.73664 7.22229 7.37184 8.85147 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.003202 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.479644 B = 8743.281677 C = 9864.871987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.265 1.265 13 C 0.484 3.516 14 O -0.590 6.590 15 C 0.077 3.923 16 N -0.473 5.473 17 C 0.165 3.835 18 C -0.214 4.214 19 C -0.062 4.062 20 C 0.514 3.486 21 F -0.177 7.177 22 F -0.165 7.165 23 F -0.172 7.172 24 C -0.205 4.205 25 C 0.509 3.491 26 O -0.583 6.583 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.020 0.980 33 H -0.012 1.012 34 H 0.266 0.734 35 H 0.180 0.820 36 H 0.136 0.864 37 H 0.215 0.785 38 H 0.189 0.811 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -8.597 21.206 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.190 1.190 13 C 0.271 3.729 14 O -0.470 6.470 15 C -0.048 4.048 16 N -0.180 5.180 17 C 0.038 3.962 18 C -0.235 4.235 19 C -0.068 4.068 20 C 0.460 3.540 21 F -0.158 7.158 22 F -0.146 7.146 23 F -0.153 7.153 24 C -0.227 4.227 25 C 0.311 3.689 26 O -0.468 6.468 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.038 0.962 33 H 0.006 0.994 34 H 0.075 0.925 35 H 0.197 0.803 36 H 0.154 0.846 37 H 0.232 0.768 38 H 0.206 0.794 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.121 -7.952 20.723 22.224 hybrid contribution 0.429 0.891 -0.761 1.248 sum 1.550 -7.061 19.961 21.230 Atomic orbital electron populations 1.22199 0.95344 1.03654 1.01277 1.21892 0.94746 0.80846 1.05080 1.48248 1.63135 1.15383 1.05842 1.18712 0.95774 0.91146 0.80190 1.21701 0.97477 1.31998 1.06561 0.91738 1.25938 1.02585 0.94428 0.96529 1.70078 1.38022 1.34303 1.14839 0.85355 0.78736 0.77942 0.78410 1.18853 1.21321 1.18954 1.21267 0.77993 0.86862 0.86735 1.90700 1.48220 1.20301 1.87818 1.22209 1.08048 0.93117 0.81378 1.45259 1.10861 1.33965 1.27959 1.22709 0.85388 0.96727 0.91397 1.20629 1.01644 1.00104 1.01153 1.20491 0.95620 0.96045 0.94609 1.18094 0.74535 0.79187 0.82197 1.93195 1.51414 1.78725 1.92455 1.93246 1.89605 1.75475 1.56248 1.93252 1.60701 1.70636 1.90743 1.22070 0.98402 1.03411 0.98793 1.17123 0.84872 0.81898 0.84967 1.90959 1.22168 1.69666 1.64008 0.88084 0.92937 0.94725 0.90035 0.86658 0.96161 0.99355 0.92530 0.80331 0.84644 0.76820 0.79379 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 10.24 71.98 0.74 -3.24 16 2 C 0.10 2.52 5.93 86.38 0.51 3.03 16 3 N -0.60 -23.46 2.46 -826.16 -2.03 -25.49 16 4 C 0.26 13.89 5.16 85.63 0.44 14.34 16 5 C -0.54 -29.61 9.39 25.60 0.24 -29.37 16 6 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 7 C 0.00 0.22 5.46 84.66 0.46 0.68 16 8 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 9 Si 0.97 43.17 29.54 68.60 2.03 45.19 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 13 C 0.48 18.67 7.74 87.66 0.68 19.35 16 14 O -0.59 -29.64 16.01 -3.02 -0.05 -29.69 16 15 C 0.08 1.83 4.37 85.63 0.37 2.21 16 16 N -0.47 -11.98 2.07 -655.07 -1.36 -13.34 16 17 C 0.16 2.86 10.28 83.42 0.86 3.72 16 18 C -0.21 -3.51 9.63 22.08 0.21 -3.30 16 19 C -0.06 -1.30 5.37 -19.82 -0.11 -1.41 16 20 C 0.51 9.93 3.33 71.23 0.24 10.17 16 21 F -0.18 -3.69 16.00 44.97 0.72 -2.98 16 22 F -0.16 -2.86 17.25 44.97 0.78 -2.08 16 23 F -0.17 -3.56 17.25 44.97 0.78 -2.78 16 24 C -0.20 -5.38 9.38 22.40 0.21 -5.17 16 25 C 0.51 16.08 7.40 84.82 0.63 16.71 16 26 O -0.58 -23.03 16.64 -5.52 -0.09 -23.12 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.27 7.22 -2.39 -0.02 1.26 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 2.26 8.07 -2.39 -0.02 2.25 16 31 H 0.12 1.84 6.44 -2.38 -0.02 1.82 16 32 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 33 H -0.01 -0.74 7.42 -2.39 -0.02 -0.76 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.18 2.10 7.27 -2.39 -0.02 2.08 16 36 H 0.14 3.12 6.43 -2.39 -0.02 3.11 16 37 H 0.22 1.84 8.04 -2.91 -0.02 1.82 16 38 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.16 4.08 7.18 -2.91 -0.02 4.05 16 Total: -1.00 -84.23 352.10 7.64 -76.59 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.10 Total: 5.82 kcal Atomic # 6 Polarization: 22.24 SS G_CDS: 5.48 Total: 27.72 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -3.10 Total: -94.68 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.14 Total: -52.81 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 2.27 Total: -7.84 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -84.23 7.64 -76.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283013805.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.814 kcal (2) G-P(sol) polarization free energy of solvation -84.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds