Wall clock time and date at job start Tue Mar 31 2020 16:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00528 * 2 1 4 4 C 1.52994 * 109.47082 * 89.99725 * 3 2 1 5 5 H 1.09004 * 109.47451 * 60.00096 * 4 3 2 6 6 O 1.42902 * 109.47439 * 300.00284 * 4 3 2 7 7 C 1.53002 * 109.47334 * 180.02562 * 4 3 2 8 8 F 1.39899 * 109.46848 * 59.99790 * 7 4 3 9 9 F 1.39901 * 109.47449 * 179.97438 * 7 4 3 10 10 F 1.39904 * 109.46860 * 300.00362 * 7 4 3 11 11 C 1.34782 * 119.99723 * 179.97438 * 2 1 3 12 12 O 1.21577 * 120.00062 * 179.97438 * 11 2 1 13 13 N 1.34772 * 119.99805 * 0.02562 * 11 2 1 14 14 C 1.39248 * 119.99911 * 175.72297 * 13 11 2 15 15 C 1.39481 * 119.83144 * 215.00495 * 14 13 11 16 16 C 1.36377 * 120.16481 * 179.75505 * 15 14 13 17 17 C 1.40866 * 119.83051 * 0.54158 * 16 15 14 18 18 C 1.41158 * 120.16710 * 179.69552 * 17 16 15 19 19 H 1.08004 * 119.99717 * 214.81455 * 18 17 16 20 20 C 1.39892 * 119.99754 * 34.80844 * 18 17 16 21 21 N 1.30877 * 120.00221 * 355.53120 * 20 18 17 22 22 Si 1.86802 * 119.99877 * 175.53053 * 20 18 17 23 23 H 1.48504 * 109.46952 * 60.00049 * 22 20 18 24 24 H 1.48493 * 109.47534 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46985 * 300.00577 * 22 20 18 26 26 C 1.40874 * 119.67256 * 359.71319 * 17 16 15 27 27 C 1.36376 * 119.82563 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.47193 * 90.00050 * 1 2 3 29 29 H 1.08999 * 109.47285 * 209.99863 * 1 2 3 30 30 H 1.09005 * 109.47126 * 330.00352 * 1 2 3 31 31 H 1.09004 * 109.46891 * 330.00041 * 3 2 1 32 32 H 1.08998 * 109.47396 * 210.00169 * 3 2 1 33 33 H 0.96703 * 113.99802 * 300.00438 * 6 4 3 34 34 H 0.96997 * 120.00249 * 355.72034 * 13 11 2 35 35 H 1.08002 * 119.91751 * 359.97438 * 15 14 13 36 36 H 1.08002 * 120.08707 * 180.24953 * 16 15 14 37 37 H 0.97003 * 120.00046 * 179.97438 * 21 20 18 38 38 H 1.07999 * 120.08812 * 179.97438 * 26 17 16 39 39 H 1.07997 * 119.91436 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 1.4424 5 1 3.0416 0.9507 1.9564 6 8 1.2039 1.8813 2.1161 7 6 3.2171 3.0356 1.4425 8 9 2.4606 4.0104 0.7831 9 9 3.4498 3.4398 2.7615 10 9 4.4395 2.8687 0.7828 11 6 2.1388 -1.1673 0.0005 12 8 3.3546 -1.1673 0.0001 13 7 1.4648 -2.3344 0.0005 14 6 2.1581 -3.5387 -0.0889 15 6 1.6019 -4.6092 -0.7889 16 6 2.2771 -5.7902 -0.8850 17 6 3.5344 -5.9309 -0.2654 18 6 4.2366 -7.1521 -0.3549 19 1 4.8370 -7.4919 0.4762 20 6 4.1548 -7.9222 -1.5199 21 7 3.3593 -7.5554 -2.4923 22 14 5.1809 -9.4741 -1.6876 23 1 4.8225 -10.4240 -0.6037 24 1 4.9147 -10.1035 -3.0059 25 1 6.6216 -9.1283 -1.5864 26 6 4.0873 -4.8468 0.4444 27 6 3.4030 -3.6700 0.5264 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 1.6085 2.0284 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 0.6268 2.5440 1.7125 34 1 0.4969 -2.3355 0.0628 35 1 0.6355 -4.5015 -1.2590 36 1 1.8470 -6.6170 -1.4307 37 1 3.3029 -8.0892 -3.3002 38 1 5.0505 -4.9475 0.9223 39 1 3.8253 -2.8382 1.0705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305779585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:53 Heat of formation + Delta-G solvation = -196.534544 kcal Electronic energy + Delta-G solvation = -28430.965792 eV Core-core repulsion = 23731.037235 eV Total energy + Delta-G solvation = -4699.928557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.44406 -47.98062 -47.88687 -40.36740 -38.30622 -37.28176 -35.21043 -34.53424 -32.93026 -31.08137 -29.55758 -28.80128 -27.26855 -26.04802 -24.49299 -22.82650 -21.48908 -20.82853 -19.65958 -18.94840 -18.84077 -18.59800 -17.98202 -17.27349 -16.69159 -16.62136 -15.65386 -15.38315 -15.06771 -14.84484 -14.74057 -14.60576 -14.34773 -14.05752 -14.04204 -13.96037 -13.85872 -13.77382 -13.25898 -12.94807 -12.71517 -12.66453 -12.16188 -12.04563 -11.97097 -11.68990 -11.31867 -11.15512 -11.11161 -10.96427 -10.71785 -10.12707 -9.56740 -9.46847 -9.24012 -8.91773 -8.75876 -7.53328 -6.83755 -6.60003 -4.32485 2.17252 2.63116 2.76143 3.09664 3.10661 3.12500 3.15627 3.32059 3.36321 3.54558 3.69764 3.99414 4.05011 4.17953 4.38627 4.53477 4.72257 4.88089 5.14122 5.24207 5.34788 5.47074 5.65898 6.16600 6.23635 6.41769 6.71708 6.75320 6.82462 7.02417 7.12340 7.24383 7.35523 7.65977 7.83289 7.93315 8.09179 8.30799 8.36954 8.64855 8.86994 8.94725 9.04120 10.31187 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.002406 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.060044 B =11635.084400 C =12207.800729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.629 5.629 3 C 0.105 3.895 4 C 0.054 3.946 5 H 0.148 0.852 6 O -0.525 6.525 7 C 0.423 3.577 8 F -0.186 7.186 9 F -0.176 7.176 10 F -0.174 7.174 11 C 0.696 3.304 12 O -0.573 6.573 13 N -0.661 5.661 14 C 0.019 3.981 15 C -0.122 4.122 16 C -0.141 4.141 17 C 0.099 3.901 18 C -0.462 4.462 19 H 0.075 0.925 20 C 0.070 3.930 21 N -0.813 5.813 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.204 4.204 27 C -0.085 4.085 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.380 0.620 34 H 0.393 0.607 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.278 0.722 38 H 0.096 0.904 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 18.349 3.904 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C -0.020 4.020 4 C -0.009 4.009 5 H 0.165 0.835 6 O -0.330 6.330 7 C 0.368 3.632 8 F -0.168 7.168 9 F -0.158 7.158 10 F -0.155 7.155 11 C 0.398 3.602 12 O -0.450 6.450 13 N -0.308 5.308 14 C -0.074 4.074 15 C -0.142 4.142 16 C -0.161 4.161 17 C 0.097 3.903 18 C -0.493 4.493 19 H 0.093 0.907 20 C -0.145 4.145 21 N -0.441 5.441 22 Si 0.740 3.260 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.224 4.224 27 C -0.105 4.105 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.030 17.819 4.027 19.574 hybrid contribution -0.133 0.145 -0.579 0.611 sum -7.163 17.964 3.448 19.644 Atomic orbital electron populations 1.21751 0.79493 1.03295 1.01547 1.46761 1.06296 1.03980 1.79648 1.21804 1.00632 0.86197 0.93389 1.23867 0.86796 0.91764 0.98507 0.83452 1.86777 1.26873 1.63294 1.56020 1.21604 0.79163 0.88517 0.73922 1.93165 1.75816 1.66529 1.81247 1.93218 1.94707 1.91982 1.35846 1.93238 1.45836 1.95490 1.80953 1.15974 0.85486 0.80275 0.78465 1.90922 1.11309 1.85573 1.57171 1.42241 1.09163 1.03629 1.75777 1.17087 0.96887 0.84763 1.08660 1.20280 0.99490 0.94379 1.00052 1.21176 0.94763 0.96800 1.03343 1.17713 0.90597 0.92182 0.89832 1.19459 1.25864 1.03464 1.00482 0.90676 1.25864 0.94857 0.98389 0.95397 1.69754 1.31638 1.37014 1.05651 0.86256 0.80743 0.80940 0.78025 1.19079 1.20473 1.19118 1.20809 0.99839 0.93273 1.08495 1.20409 0.94241 0.97110 0.98771 0.92624 0.91209 0.90769 0.89033 0.87212 0.77124 0.77221 0.89185 0.85022 0.91138 0.88613 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 9.98 59.84 0.60 1.24 16 2 N -0.63 -7.39 2.80 -187.36 -0.52 -7.91 16 3 C 0.11 1.02 4.86 -4.04 -0.02 1.00 16 4 C 0.05 0.51 3.24 -26.73 -0.09 0.42 16 5 H 0.15 1.69 8.14 -51.93 -0.42 1.27 16 6 O -0.52 -4.27 12.00 -35.23 -0.42 -4.69 16 7 C 0.42 4.00 2.85 37.16 0.11 4.11 16 8 F -0.19 -1.54 16.41 2.25 0.04 -1.50 16 9 F -0.18 -1.89 17.26 2.25 0.04 -1.85 16 10 F -0.17 -1.92 16.80 2.25 0.04 -1.88 16 11 C 0.70 11.90 8.11 -86.92 -0.70 11.19 16 12 O -0.57 -12.08 13.34 5.30 0.07 -12.01 16 13 N -0.66 -11.46 5.18 -14.10 -0.07 -11.53 16 14 C 0.02 0.41 6.31 -83.57 -0.53 -0.12 16 15 C -0.12 -2.74 9.90 -39.79 -0.39 -3.14 16 16 C -0.14 -3.60 8.62 -39.26 -0.34 -3.94 16 17 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 18 C -0.46 -12.34 9.02 -37.86 -0.34 -12.68 16 19 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 20 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 21 N -0.81 -21.16 10.60 55.54 0.59 -20.57 16 22 Si 0.92 19.06 29.56 -169.99 -5.03 14.03 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 26 C -0.20 -5.17 9.74 -39.26 -0.38 -5.55 16 27 C -0.09 -2.04 8.61 -39.79 -0.34 -2.38 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.54 6.30 -51.93 -0.33 0.21 16 30 H 0.07 0.39 6.88 -51.93 -0.36 0.03 16 31 H 0.09 0.60 7.73 -51.93 -0.40 0.19 16 32 H 0.11 1.29 7.08 -51.93 -0.37 0.92 16 33 H 0.38 1.56 8.43 45.56 0.38 1.94 16 34 H 0.39 5.36 6.51 -40.82 -0.27 5.09 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 37 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 38 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.11 2.56 6.22 -52.49 -0.33 2.23 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -31.80 341.31 -6.47 -38.27 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -3.22 Total: 10.61 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.12 Total: -6.10 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -0.01 Total: -40.01 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.35 Total: -16.70 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.11 Total: -5.24 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.80 -6.47 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305779585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.267 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds