Wall clock time and date at job start Tue Mar 31 2020 16:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00528 * 2 1 4 4 C 1.52994 * 109.47082 * 89.99725 * 3 2 1 5 5 H 1.09004 * 109.47451 * 60.00096 * 4 3 2 6 6 O 1.42902 * 109.47439 * 300.00284 * 4 3 2 7 7 C 1.53002 * 109.47334 * 180.02562 * 4 3 2 8 8 F 1.39899 * 109.46848 * 59.99790 * 7 4 3 9 9 F 1.39901 * 109.47449 * 179.97438 * 7 4 3 10 10 F 1.39904 * 109.46860 * 300.00362 * 7 4 3 11 11 C 1.34782 * 119.99723 * 179.97438 * 2 1 3 12 12 O 1.21577 * 120.00062 * 179.97438 * 11 2 1 13 13 N 1.34772 * 119.99805 * 0.02562 * 11 2 1 14 14 C 1.39248 * 119.99911 * 175.72297 * 13 11 2 15 15 C 1.39481 * 119.83144 * 215.00495 * 14 13 11 16 16 C 1.36377 * 120.16481 * 179.75505 * 15 14 13 17 17 C 1.40866 * 119.83051 * 0.54158 * 16 15 14 18 18 C 1.41158 * 120.16710 * 179.69552 * 17 16 15 19 19 H 1.08004 * 119.99717 * 214.81455 * 18 17 16 20 20 C 1.39892 * 119.99754 * 34.80844 * 18 17 16 21 21 N 1.30877 * 120.00221 * 355.53120 * 20 18 17 22 22 Si 1.86802 * 119.99877 * 175.53053 * 20 18 17 23 23 H 1.48504 * 109.46952 * 60.00049 * 22 20 18 24 24 H 1.48493 * 109.47534 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46985 * 300.00577 * 22 20 18 26 26 C 1.40874 * 119.67256 * 359.71319 * 17 16 15 27 27 C 1.36376 * 119.82563 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.47193 * 90.00050 * 1 2 3 29 29 H 1.08999 * 109.47285 * 209.99863 * 1 2 3 30 30 H 1.09005 * 109.47126 * 330.00352 * 1 2 3 31 31 H 1.09004 * 109.46891 * 330.00041 * 3 2 1 32 32 H 1.08998 * 109.47396 * 210.00169 * 3 2 1 33 33 H 0.96703 * 113.99802 * 300.00438 * 6 4 3 34 34 H 0.96997 * 120.00249 * 355.72034 * 13 11 2 35 35 H 1.08002 * 119.91751 * 359.97438 * 15 14 13 36 36 H 1.08002 * 120.08707 * 180.24953 * 16 15 14 37 37 H 0.97003 * 120.00046 * 179.97438 * 21 20 18 38 38 H 1.07999 * 120.08812 * 179.97438 * 26 17 16 39 39 H 1.07997 * 119.91436 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 1.4424 5 1 3.0416 0.9507 1.9564 6 8 1.2039 1.8813 2.1161 7 6 3.2171 3.0356 1.4425 8 9 2.4606 4.0104 0.7831 9 9 3.4498 3.4398 2.7615 10 9 4.4395 2.8687 0.7828 11 6 2.1388 -1.1673 0.0005 12 8 3.3546 -1.1673 0.0001 13 7 1.4648 -2.3344 0.0005 14 6 2.1581 -3.5387 -0.0889 15 6 1.6019 -4.6092 -0.7889 16 6 2.2771 -5.7902 -0.8850 17 6 3.5344 -5.9309 -0.2654 18 6 4.2366 -7.1521 -0.3549 19 1 4.8370 -7.4919 0.4762 20 6 4.1548 -7.9222 -1.5199 21 7 3.3593 -7.5554 -2.4923 22 14 5.1809 -9.4741 -1.6876 23 1 4.8225 -10.4240 -0.6037 24 1 4.9147 -10.1035 -3.0059 25 1 6.6216 -9.1283 -1.5864 26 6 4.0873 -4.8468 0.4444 27 6 3.4030 -3.6700 0.5264 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 1.6085 2.0284 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 0.6268 2.5440 1.7125 34 1 0.4969 -2.3355 0.0628 35 1 0.6355 -4.5015 -1.2590 36 1 1.8470 -6.6170 -1.4307 37 1 3.3029 -8.0892 -3.3002 38 1 5.0505 -4.9475 0.9223 39 1 3.8253 -2.8382 1.0705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305779585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:52 Heat of formation + Delta-G solvation = -218.000768 kcal Electronic energy + Delta-G solvation = -28431.896637 eV Core-core repulsion = 23731.037235 eV Total energy + Delta-G solvation = -4700.859402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.22809 -48.73363 -48.71532 -41.66520 -39.57546 -38.61065 -36.30469 -36.17615 -34.65226 -31.99502 -31.41270 -30.56743 -28.01361 -27.37441 -25.97261 -23.76216 -23.19095 -22.51631 -20.99006 -19.84620 -19.72102 -19.37519 -19.26813 -19.00306 -18.09190 -17.47787 -17.05229 -16.51534 -16.39606 -16.09380 -15.65060 -15.54052 -15.40412 -15.14360 -15.10125 -14.89704 -14.84916 -14.81473 -14.52525 -14.42383 -14.00523 -13.90793 -13.58384 -13.37199 -13.21321 -12.89089 -12.78915 -12.75326 -12.69136 -12.44268 -11.86719 -11.75234 -11.38469 -11.22755 -10.99280 -10.64639 -9.75373 -9.44080 -8.67074 -8.48016 -6.30400 0.85238 1.16322 1.33294 1.40568 1.50785 1.53228 1.73714 2.12148 2.25845 2.59173 2.65564 2.82171 2.86171 3.07490 3.32113 3.60721 3.70352 3.76776 4.24960 4.37822 4.42999 4.48701 4.56125 4.72449 4.91423 4.94413 5.14091 5.16542 5.30278 5.44610 5.45636 5.66714 5.77467 6.03529 6.08370 6.19876 6.38146 6.42192 6.70553 6.96706 6.99731 7.03436 7.58230 8.44495 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.002406 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.060044 B =11635.084400 C =12207.800729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.617 5.617 3 C 0.102 3.898 4 C 0.068 3.932 5 H 0.122 0.878 6 O -0.528 6.528 7 C 0.429 3.571 8 F -0.175 7.175 9 F -0.184 7.184 10 F -0.185 7.185 11 C 0.690 3.310 12 O -0.619 6.619 13 N -0.656 5.656 14 C 0.039 3.961 15 C -0.119 4.119 16 C -0.158 4.158 17 C 0.067 3.933 18 C -0.500 4.500 19 H 0.071 0.929 20 C 0.028 3.972 21 N -0.842 5.842 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.267 1.267 26 C -0.220 4.220 27 C -0.097 4.097 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.400 0.600 34 H 0.413 0.587 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.284 0.716 38 H 0.094 0.906 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.045 19.814 3.501 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.353 5.353 3 C -0.022 4.022 4 C 0.004 3.996 5 H 0.140 0.860 6 O -0.336 6.336 7 C 0.374 3.626 8 F -0.156 7.156 9 F -0.165 7.165 10 F -0.167 7.167 11 C 0.392 3.608 12 O -0.499 6.499 13 N -0.305 5.305 14 C -0.055 4.055 15 C -0.139 4.139 16 C -0.178 4.178 17 C 0.064 3.936 18 C -0.531 4.531 19 H 0.090 0.910 20 C -0.183 4.183 21 N -0.470 5.470 22 Si 0.808 3.192 23 H -0.183 1.183 24 H -0.192 1.192 25 H -0.191 1.191 26 C -0.240 4.240 27 C -0.117 4.117 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.105 0.895 33 H 0.252 0.748 34 H 0.252 0.748 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.075 19.362 3.632 21.690 hybrid contribution 0.343 -0.053 -0.410 0.537 sum -8.732 19.309 3.222 21.435 Atomic orbital electron populations 1.22114 0.76476 1.05102 1.03263 1.46751 1.08040 1.02729 1.77766 1.22000 1.00400 0.86083 0.93764 1.23487 0.87186 0.90993 0.97932 0.86016 1.86762 1.26422 1.64217 1.56221 1.21552 0.78790 0.88734 0.73528 1.93186 1.75362 1.66112 1.80942 1.93203 1.94764 1.92063 1.36504 1.93220 1.46722 1.95581 1.81151 1.16200 0.85080 0.81393 0.78080 1.90897 1.13596 1.86461 1.58969 1.42026 1.10047 1.02422 1.76004 1.17102 0.95996 0.86257 1.06147 1.20520 1.00583 0.93351 0.99460 1.21162 0.94859 0.97791 1.03968 1.18014 0.91582 0.92865 0.91110 1.19689 1.27245 1.04640 1.01489 0.91045 1.26704 0.95782 1.01358 0.94504 1.69818 1.32701 1.38319 1.06144 0.85177 0.78647 0.76823 0.78540 1.18252 1.19221 1.19131 1.20922 1.00226 0.93845 1.08964 1.20515 0.95342 0.96457 0.99416 0.90905 0.90994 0.87505 0.84820 0.89466 0.74760 0.74790 0.85702 0.86267 0.90511 0.88785 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.98 127.77 1.27 2.08 16 2 N -0.62 -12.85 2.80 -864.93 -2.42 -15.27 16 3 C 0.10 1.74 4.86 86.38 0.42 2.16 16 4 C 0.07 1.16 3.24 30.59 0.10 1.25 16 5 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 6 O -0.53 -6.94 12.00 -148.98 -1.79 -8.73 16 7 C 0.43 7.46 2.85 71.98 0.21 7.67 16 8 F -0.17 -2.41 16.41 44.97 0.74 -1.67 16 9 F -0.18 -3.74 17.26 44.97 0.78 -2.96 16 10 F -0.19 -3.99 16.80 44.97 0.76 -3.23 16 11 C 0.69 22.73 8.11 179.05 1.45 24.19 16 12 O -0.62 -26.27 13.34 -3.96 -0.05 -26.33 16 13 N -0.66 -21.56 5.18 -316.79 -1.64 -23.20 16 14 C 0.04 1.70 6.31 38.56 0.24 1.94 16 15 C -0.12 -5.28 9.90 22.14 0.22 -5.06 16 16 C -0.16 -8.23 8.62 22.48 0.19 -8.04 16 17 C 0.07 3.71 5.55 -21.27 -0.12 3.59 16 18 C -0.50 -27.75 9.02 23.39 0.21 -27.54 16 19 H 0.07 3.84 7.85 -2.91 -0.02 3.81 16 20 C 0.03 1.46 5.42 85.24 0.46 1.92 16 21 N -0.84 -44.64 10.60 21.82 0.23 -44.41 16 22 Si 0.99 39.49 29.56 68.60 2.03 41.52 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 26 C -0.22 -11.59 9.74 22.48 0.22 -11.37 16 27 C -0.10 -4.74 8.61 22.13 0.19 -4.55 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.82 6.30 -2.39 -0.02 0.80 16 30 H 0.11 0.55 6.88 -2.38 -0.02 0.53 16 31 H 0.13 1.16 7.73 -2.38 -0.02 1.14 16 32 H 0.09 1.97 7.08 -2.39 -0.02 1.95 16 33 H 0.40 1.53 8.43 -74.06 -0.62 0.91 16 34 H 0.41 10.06 6.51 -92.71 -0.60 9.45 16 35 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.12 6.47 6.13 -2.91 -0.02 6.45 16 37 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 38 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.11 5.21 6.22 -2.91 -0.02 5.19 16 Total: -1.00 -72.17 341.31 3.61 -68.56 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.09 Total: 27.47 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.07 Total: -11.75 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -3.83 Total: -82.88 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.84 Total: -35.05 kcal Atomic # 9 Polarization: -10.14 SS G_CDS: 2.27 Total: -7.87 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -72.17 3.61 -68.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305779585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.444 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds