Wall clock time and date at job start Tue Mar 31 2020 16:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47149 * 2 1 4 4 C 1.36559 * 127.17205 * 273.86430 * 3 2 1 5 5 S 1.76199 * 126.38362 * 359.97438 * 4 3 2 6 6 C 1.80994 * 100.00223 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47281 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99827 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99722 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99622 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00397 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00015 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99675 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00037 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46857 * 90.00181 * 14 12 10 16 16 H 1.48500 * 109.47328 * 210.00159 * 14 12 10 17 17 H 1.48500 * 109.47284 * 330.00481 * 14 12 10 18 18 N 1.31446 * 107.23893 * 180.02562 * 4 3 2 19 19 N 1.28511 * 110.07546 * 0.02562 * 18 4 3 20 20 C 1.31271 * 109.96340 * 359.97438 * 19 18 4 21 21 C 1.47834 * 126.46558 * 179.74666 * 20 19 18 22 22 C 1.39573 * 120.14330 * 340.73984 * 21 20 19 23 23 C 1.37957 * 119.85058 * 179.72657 * 22 21 20 24 24 C 1.38363 * 120.14593 * 0.55574 * 23 22 21 25 25 C 1.38357 * 120.29101 * 359.72021 * 24 23 22 26 26 C 1.37960 * 120.14608 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.47145 * 60.00112 * 1 2 3 28 28 H 1.08993 * 109.47656 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47409 * 300.00214 * 1 2 3 30 30 H 1.08992 * 109.46984 * 239.99909 * 2 1 3 31 31 H 1.09001 * 109.46689 * 119.99708 * 2 1 3 32 32 H 1.09004 * 109.47208 * 300.00042 * 6 5 4 33 33 H 1.09001 * 109.47743 * 60.00040 * 6 5 4 34 34 H 0.96994 * 120.00337 * 359.97438 * 9 7 6 35 35 H 0.97005 * 119.99288 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.07728 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.93497 * 180.27880 * 23 22 21 38 38 H 1.07999 * 119.85576 * 179.70208 * 24 23 22 39 39 H 1.08004 * 119.93083 * 180.02562 * 25 24 23 40 40 H 1.08000 * 120.07621 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2242 2.1836 -1.0857 5 16 1.9512 1.7510 -2.7718 6 6 2.4406 3.2969 -3.5761 7 6 2.2845 3.1580 -5.0686 8 8 1.8824 2.1162 -5.5419 9 7 2.5927 4.1911 -5.8773 10 6 2.4502 4.0649 -7.2350 11 1 2.0913 3.1375 -7.6565 12 6 2.7684 5.1298 -8.0690 13 7 2.6322 5.0086 -9.3704 14 14 3.3897 6.7336 -7.3402 15 1 4.8708 6.6914 -7.2413 16 1 2.9839 7.8642 -8.2133 17 1 2.8084 6.9202 -5.9865 18 7 2.6651 3.3383 -0.6386 19 7 2.7487 3.3122 0.6435 20 6 2.3660 2.1400 1.0938 21 6 2.3229 1.7136 2.5086 22 6 3.0651 2.4005 3.4706 23 6 3.0161 2.0008 4.7901 24 6 2.2424 0.9146 5.1589 25 6 1.5088 0.2258 4.2093 26 6 1.5441 0.6190 2.8874 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8070 4.1087 -3.2188 33 1 3.4813 3.5167 -3.3382 34 1 2.9146 5.0241 -5.4988 35 1 2.8541 5.7522 -9.9525 36 1 3.6734 3.2454 3.1833 37 1 3.5863 2.5341 5.5363 38 1 2.2112 0.6028 6.1924 39 1 0.9065 -0.6210 4.5037 40 1 0.9706 0.0808 2.1471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339922701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:44 Heat of formation + Delta-G solvation = 76.154435 kcal Electronic energy + Delta-G solvation = -24497.088862 eV Core-core repulsion = 20825.887349 eV Total energy + Delta-G solvation = -3671.201513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.92770 -39.38428 -38.44787 -36.13116 -34.16325 -32.77980 -31.84761 -31.41962 -30.88643 -29.95530 -29.07801 -24.91955 -24.53169 -23.72700 -23.24870 -22.01570 -21.02411 -19.64964 -18.68307 -18.01078 -17.14876 -16.63318 -16.42652 -16.08393 -16.01486 -15.04474 -14.90772 -14.73460 -14.68413 -14.25969 -13.67987 -13.59880 -13.55338 -13.40464 -13.22865 -12.79107 -12.71846 -12.30563 -12.12361 -12.00093 -11.68666 -11.60661 -11.48073 -11.23589 -10.89150 -10.64260 -10.53237 -10.42859 -10.23592 -10.06506 -9.70119 -9.39686 -9.00349 -8.83457 -8.31476 -7.48648 -6.41130 -3.93752 0.45786 0.95611 1.06557 1.73290 2.17543 2.36931 2.69706 3.00258 3.05300 3.13255 3.44329 3.52202 3.86568 4.03669 4.14334 4.38887 4.44409 4.48638 4.51168 4.66100 4.75139 4.85762 4.98367 5.07040 5.09692 5.18034 5.20868 5.37601 5.47613 5.50741 5.57001 5.62401 5.69631 5.76460 5.80746 5.97855 6.06795 6.10114 6.45033 6.54829 7.42733 7.98786 8.42468 8.49512 8.80358 9.28355 9.61088 10.70787 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.002384 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.000398 B =11742.098399 C =12694.410789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 N -0.457 5.457 4 C 0.154 3.846 5 S 0.086 5.914 6 C -0.132 4.132 7 C 0.460 3.540 8 O -0.568 6.568 9 N -0.572 5.572 10 C -0.309 4.309 11 H 0.123 0.877 12 C 0.046 3.954 13 N -0.872 5.872 14 Si 0.878 3.122 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.266 1.266 18 N -0.295 5.295 19 N -0.267 5.267 20 C 0.209 3.791 21 C -0.007 4.007 22 C -0.078 4.078 23 C -0.116 4.116 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.375 0.625 35 H 0.276 0.724 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -9.484 28.793 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 N -0.151 5.151 4 C -0.220 4.220 5 S 0.314 5.686 6 C -0.285 4.285 7 C 0.244 3.756 8 O -0.452 6.452 9 N -0.210 5.210 10 C -0.438 4.438 11 H 0.140 0.860 12 C -0.158 4.158 13 N -0.511 5.511 14 Si 0.704 3.296 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.192 1.192 18 N -0.140 5.140 19 N -0.108 5.108 20 C -0.058 4.058 21 C -0.010 4.010 22 C -0.098 4.098 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.142 4.142 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.208 0.792 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.799 -9.655 27.658 29.350 hybrid contribution 0.511 1.340 0.946 1.718 sum -1.288 -8.316 28.605 29.817 Atomic orbital electron populations 1.22274 0.93163 1.04043 1.04083 1.22228 0.96491 0.78702 1.05763 1.46478 1.50205 1.13577 1.04792 1.27619 1.05065 0.91509 0.97770 1.86162 1.81708 1.17930 0.82817 1.23712 1.07187 0.99160 0.98434 1.18749 0.85725 0.85720 0.85360 1.90593 1.50788 1.28178 1.75607 1.42068 1.58637 1.12806 1.07444 1.19452 1.42754 1.03025 0.78553 0.85954 1.25059 0.97279 0.98266 0.95235 1.69620 1.46447 1.32687 1.02376 0.86686 0.79997 0.83542 0.79405 1.19337 1.19916 1.19173 1.74739 1.19555 1.16816 1.02921 1.74227 1.17451 1.15891 1.03244 1.22872 1.04327 0.89435 0.89121 1.17476 0.99662 0.96980 0.86898 1.21250 0.97414 0.99013 0.92094 1.21152 0.99322 0.97192 0.95775 1.21331 0.96377 0.95518 0.99727 1.21055 0.99674 1.00226 0.92502 1.21596 0.98946 0.96377 0.97259 0.90487 0.89574 0.91542 0.87778 0.87725 0.86954 0.86951 0.79158 0.91348 0.84596 0.85223 0.85624 0.85402 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.62 37.16 0.36 -0.90 16 2 C 0.09 0.76 5.84 -4.04 -0.02 0.73 16 3 N -0.46 -5.77 2.83 -114.09 -0.32 -6.10 16 4 C 0.15 2.37 8.07 -88.18 -0.71 1.65 16 5 S 0.09 1.38 21.02 -107.50 -2.26 -0.88 16 6 C -0.13 -2.32 5.71 36.01 0.21 -2.12 16 7 C 0.46 10.35 7.80 -10.98 -0.09 10.27 16 8 O -0.57 -14.75 15.44 5.56 0.09 -14.66 16 9 N -0.57 -13.51 5.09 -10.96 -0.06 -13.57 16 10 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 11 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 12 C 0.05 1.24 5.50 -17.46 -0.10 1.15 16 13 N -0.87 -24.98 13.96 55.50 0.77 -24.21 16 14 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 18 N -0.30 -5.12 11.59 30.71 0.36 -4.77 16 19 N -0.27 -4.40 12.02 32.59 0.39 -4.00 16 20 C 0.21 2.82 7.69 -153.75 -1.18 1.64 16 21 C -0.01 -0.08 5.86 -104.97 -0.62 -0.69 16 22 C -0.08 -0.74 9.70 -39.19 -0.38 -1.12 16 23 C -0.12 -0.82 10.03 -39.64 -0.40 -1.22 16 24 C -0.11 -0.68 10.04 -39.49 -0.40 -1.07 16 25 C -0.12 -0.73 10.03 -39.64 -0.40 -1.13 16 26 C -0.12 -0.97 8.64 -39.18 -0.34 -1.31 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.47 7.00 -51.93 -0.36 0.11 16 30 H 0.10 0.83 7.97 -51.93 -0.41 0.42 16 31 H 0.10 0.66 5.77 -51.93 -0.30 0.36 16 32 H 0.11 1.83 8.14 -51.91 -0.42 1.41 16 33 H 0.11 1.82 8.14 -51.92 -0.42 1.39 16 34 H 0.38 7.85 5.76 -40.82 -0.24 7.61 16 35 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.14 1.32 7.98 -52.49 -0.42 0.90 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 39 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.13 0.86 3.39 -52.49 -0.18 0.68 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -34.30 355.43 -9.03 -43.33 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.42 Total: 7.88 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -4.21 Total: -2.86 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 1.14 Total: -52.64 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.26 Total: -0.88 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.30 -9.03 -43.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.480 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds