Wall clock time and date at job start Tue Mar 31 2020 16:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47149 * 2 1 4 4 C 1.36559 * 127.17205 * 273.86430 * 3 2 1 5 5 S 1.76199 * 126.38362 * 359.97438 * 4 3 2 6 6 C 1.80994 * 100.00223 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47281 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99827 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99722 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99622 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00397 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00015 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99675 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00037 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46857 * 90.00181 * 14 12 10 16 16 H 1.48500 * 109.47328 * 210.00159 * 14 12 10 17 17 H 1.48500 * 109.47284 * 330.00481 * 14 12 10 18 18 N 1.31446 * 107.23893 * 180.02562 * 4 3 2 19 19 N 1.28511 * 110.07546 * 0.02562 * 18 4 3 20 20 C 1.31271 * 109.96340 * 359.97438 * 19 18 4 21 21 C 1.47834 * 126.46558 * 179.74666 * 20 19 18 22 22 C 1.39573 * 120.14330 * 340.73984 * 21 20 19 23 23 C 1.37957 * 119.85058 * 179.72657 * 22 21 20 24 24 C 1.38363 * 120.14593 * 0.55574 * 23 22 21 25 25 C 1.38357 * 120.29101 * 359.72021 * 24 23 22 26 26 C 1.37960 * 120.14608 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.47145 * 60.00112 * 1 2 3 28 28 H 1.08993 * 109.47656 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47409 * 300.00214 * 1 2 3 30 30 H 1.08992 * 109.46984 * 239.99909 * 2 1 3 31 31 H 1.09001 * 109.46689 * 119.99708 * 2 1 3 32 32 H 1.09004 * 109.47208 * 300.00042 * 6 5 4 33 33 H 1.09001 * 109.47743 * 60.00040 * 6 5 4 34 34 H 0.96994 * 120.00337 * 359.97438 * 9 7 6 35 35 H 0.97005 * 119.99288 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.07728 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.93497 * 180.27880 * 23 22 21 38 38 H 1.07999 * 119.85576 * 179.70208 * 24 23 22 39 39 H 1.08004 * 119.93083 * 180.02562 * 25 24 23 40 40 H 1.08000 * 120.07621 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2242 2.1836 -1.0857 5 16 1.9512 1.7510 -2.7718 6 6 2.4406 3.2969 -3.5761 7 6 2.2845 3.1580 -5.0686 8 8 1.8824 2.1162 -5.5419 9 7 2.5927 4.1911 -5.8773 10 6 2.4502 4.0649 -7.2350 11 1 2.0913 3.1375 -7.6565 12 6 2.7684 5.1298 -8.0690 13 7 2.6322 5.0086 -9.3704 14 14 3.3897 6.7336 -7.3402 15 1 4.8708 6.6914 -7.2413 16 1 2.9839 7.8642 -8.2133 17 1 2.8084 6.9202 -5.9865 18 7 2.6651 3.3383 -0.6386 19 7 2.7487 3.3122 0.6435 20 6 2.3660 2.1400 1.0938 21 6 2.3229 1.7136 2.5086 22 6 3.0651 2.4005 3.4706 23 6 3.0161 2.0008 4.7901 24 6 2.2424 0.9146 5.1589 25 6 1.5088 0.2258 4.2093 26 6 1.5441 0.6190 2.8874 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8070 4.1087 -3.2188 33 1 3.4813 3.5167 -3.3382 34 1 2.9146 5.0241 -5.4988 35 1 2.8541 5.7522 -9.9525 36 1 3.6734 3.2454 3.1833 37 1 3.5863 2.5341 5.5363 38 1 2.2112 0.6028 6.1924 39 1 0.9065 -0.6210 4.5037 40 1 0.9706 0.0808 2.1471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339922701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:44 Heat of formation + Delta-G solvation = 54.929647 kcal Electronic energy + Delta-G solvation = -24498.009238 eV Core-core repulsion = 20825.887349 eV Total energy + Delta-G solvation = -3672.121889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.98125 -40.36199 -39.97363 -36.99090 -36.17505 -33.90509 -33.55858 -32.04869 -31.61933 -31.37139 -30.18406 -26.62016 -25.62614 -24.52393 -23.95631 -22.87107 -21.90059 -21.48971 -20.52823 -19.06113 -18.00137 -17.81248 -17.62986 -17.27836 -16.87582 -16.75691 -16.39286 -15.74206 -15.48256 -15.27396 -15.05550 -14.72304 -14.63041 -14.27176 -14.13277 -14.05241 -13.97112 -13.79034 -13.42570 -13.00072 -12.66001 -12.61170 -12.47570 -12.23986 -12.18535 -12.02984 -11.88179 -11.61738 -11.54573 -11.40580 -11.35492 -10.76535 -10.35973 -9.94777 -9.77794 -8.68884 -8.47991 -6.10076 -0.28496 -0.16142 0.40938 0.77929 0.85852 1.28840 1.31698 1.41563 1.44359 1.66364 1.72413 2.17867 2.70064 2.83020 3.06904 3.07196 3.43431 3.72714 3.86305 3.89456 3.96347 4.01855 4.07227 4.15925 4.22608 4.26446 4.30838 4.47231 4.53015 4.67189 4.70909 4.85857 4.89632 5.06163 5.15092 5.40769 5.43856 5.45535 5.53987 5.64466 5.84206 5.96316 6.43598 6.73698 7.23372 7.38923 7.71997 8.68181 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.002384 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.000398 B =11742.098399 C =12694.410789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 N -0.451 5.451 4 C 0.143 3.857 5 S 0.090 5.910 6 C -0.125 4.125 7 C 0.466 3.534 8 O -0.606 6.606 9 N -0.573 5.573 10 C -0.331 4.331 11 H 0.066 0.934 12 C -0.005 4.005 13 N -0.922 5.922 14 Si 0.956 3.044 15 H -0.256 1.256 16 H -0.270 1.270 17 H -0.236 1.236 18 N -0.323 5.323 19 N -0.310 5.310 20 C 0.225 3.775 21 C -0.041 4.041 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.101 4.101 25 C -0.114 4.114 26 C -0.120 4.120 27 H 0.054 0.946 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.392 0.608 35 H 0.282 0.718 36 H 0.121 0.879 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 -9.812 33.042 34.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.041 4.041 3 N -0.144 5.144 4 C -0.232 4.232 5 S 0.317 5.683 6 C -0.277 4.277 7 C 0.252 3.748 8 O -0.492 6.492 9 N -0.213 5.213 10 C -0.460 4.460 11 H 0.084 0.916 12 C -0.206 4.206 13 N -0.561 5.561 14 Si 0.776 3.224 15 H -0.180 1.180 16 H -0.195 1.195 17 H -0.159 1.159 18 N -0.168 5.168 19 N -0.150 5.150 20 C -0.042 4.042 21 C -0.044 4.044 22 C -0.113 4.113 23 C -0.137 4.137 24 C -0.120 4.120 25 C -0.132 4.132 26 C -0.140 4.140 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.228 0.772 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.832 -10.001 31.937 33.517 hybrid contribution 0.460 1.223 -0.184 1.319 sum -1.371 -8.778 31.753 32.973 Atomic orbital electron populations 1.22278 0.91958 1.05772 1.03067 1.22651 0.97483 0.76734 1.07212 1.46735 1.49409 1.14609 1.03679 1.27367 1.06070 0.91963 0.97826 1.86097 1.82187 1.16663 0.83375 1.23521 1.08862 1.00957 0.94391 1.19545 0.83308 0.84547 0.87358 1.90577 1.51758 1.29705 1.77131 1.41885 1.59411 1.13992 1.06034 1.19041 1.44427 1.01740 0.80782 0.91602 1.26033 0.96709 1.02499 0.95348 1.69775 1.47595 1.34480 1.04290 0.85481 0.79852 0.77161 0.79895 1.18035 1.19525 1.15916 1.74612 1.20465 1.18013 1.03719 1.74144 1.19985 1.17883 1.02998 1.23446 1.01759 0.88593 0.90450 1.17643 1.02238 0.99081 0.85397 1.21299 0.97767 0.98992 0.93271 1.21429 0.99576 0.97698 0.94984 1.21777 0.94639 0.94254 1.01308 1.21467 0.99389 1.00776 0.91575 1.21789 0.98235 0.95348 0.98596 0.92670 0.86433 0.91342 0.87464 0.85161 0.85229 0.85132 0.77213 0.90814 0.86067 0.83172 0.82513 0.82254 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.62 71.98 0.69 -1.42 16 2 C 0.08 1.19 5.84 86.38 0.50 1.70 16 3 N -0.45 -11.10 2.83 -514.86 -1.46 -12.56 16 4 C 0.14 4.38 8.07 179.50 1.45 5.82 16 5 S 0.09 2.86 21.02 -56.49 -1.19 1.67 16 6 C -0.13 -4.34 5.71 71.24 0.41 -3.93 16 7 C 0.47 21.29 7.80 87.66 0.68 21.98 16 8 O -0.61 -32.64 15.44 -3.04 -0.05 -32.69 16 9 N -0.57 -27.32 5.09 -306.98 -1.56 -28.88 16 10 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 11 H 0.07 4.47 7.39 -2.91 -0.02 4.45 16 12 C -0.01 -0.30 5.50 84.93 0.47 0.17 16 13 N -0.92 -54.58 13.96 21.66 0.30 -54.28 16 14 Si 0.96 39.02 27.74 68.60 1.90 40.92 16 15 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 16 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.24 -8.38 6.52 99.48 0.65 -7.73 16 18 N -0.32 -11.29 11.59 -56.75 -0.66 -11.95 16 19 N -0.31 -10.35 12.02 -50.79 -0.61 -10.96 16 20 C 0.22 6.00 7.69 136.20 1.05 7.05 16 21 C -0.04 -0.81 5.86 -20.09 -0.12 -0.93 16 22 C -0.09 -1.68 9.70 22.53 0.22 -1.47 16 23 C -0.12 -1.37 10.03 22.23 0.22 -1.15 16 24 C -0.10 -0.81 10.04 22.33 0.22 -0.59 16 25 C -0.11 -0.95 10.03 22.23 0.22 -0.73 16 26 C -0.12 -1.56 8.64 22.53 0.19 -1.37 16 27 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.81 7.00 -2.39 -0.02 0.80 16 30 H 0.11 1.56 7.97 -2.39 -0.02 1.54 16 31 H 0.13 1.27 5.77 -2.39 -0.01 1.26 16 32 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 33 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 34 H 0.39 15.84 5.76 -92.71 -0.53 15.30 16 35 H 0.28 15.24 8.31 -92.70 -0.77 14.47 16 36 H 0.12 2.45 7.98 -2.91 -0.02 2.42 16 37 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.16 0.32 8.06 -2.91 -0.02 0.29 16 39 H 0.16 0.35 8.06 -2.91 -0.02 0.32 16 40 H 0.15 1.41 3.39 -2.91 -0.01 1.40 16 Total: -1.00 -80.26 355.43 4.26 -76.01 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.51 Total: 25.83 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 7.07 Total: 6.87 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -3.99 Total: -118.62 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.05 Total: -32.69 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.90 Total: 40.92 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.19 Total: 1.67 kcal Total: -80.26 4.26 -76.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.935 kcal (2) G-P(sol) polarization free energy of solvation -80.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds