Wall clock time and date at job start Tue Mar 31 2020 16:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42892 * 109.47041 * 2 1 4 4 C 1.35429 * 117.00039 * 179.97438 * 3 2 1 5 5 N 1.32220 * 119.80588 * 0.25067 * 4 3 2 6 6 C 1.31888 * 121.80568 * 180.28787 * 5 4 3 7 7 C 1.50706 * 119.40102 * 179.70110 * 6 5 4 8 8 F 1.39899 * 109.47154 * 270.02501 * 7 6 5 9 9 F 1.39901 * 109.46749 * 30.02158 * 7 6 5 10 10 F 1.39894 * 109.47248 * 150.01989 * 7 6 5 11 11 C 1.38368 * 121.20448 * 359.72498 * 6 5 4 12 12 C 1.38327 * 119.45829 * 359.97438 * 11 6 5 13 13 C 1.40048 * 118.34638 * 0.02562 * 12 11 6 14 14 C 1.47416 * 120.60023 * 179.97438 * 13 12 11 15 15 O 1.21636 * 119.99396 * 234.75327 * 14 13 12 16 16 N 1.34772 * 120.00400 * 55.03080 * 14 13 12 17 17 C 1.36908 * 119.99807 * 184.99605 * 16 14 13 18 18 H 1.08000 * 119.99867 * 11.18490 * 17 16 14 19 19 C 1.39017 * 119.99698 * 191.17687 * 17 16 14 20 20 N 1.31378 * 120.00143 * 8.85399 * 19 17 16 21 21 Si 1.86803 * 120.00123 * 188.85152 * 19 17 16 22 22 H 1.48501 * 109.46677 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47544 * 120.00146 * 21 19 17 24 24 H 1.48499 * 109.47236 * 240.00599 * 21 19 17 25 25 C 1.46496 * 119.99932 * 4.99622 * 16 14 13 26 26 C 1.52998 * 109.47256 * 88.75980 * 25 16 14 27 27 H 1.08997 * 109.46794 * 60.00225 * 1 2 3 28 28 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46899 * 299.99739 * 1 2 3 30 30 H 1.08998 * 109.46899 * 240.00261 * 2 1 3 31 31 H 1.09002 * 109.46990 * 120.00204 * 2 1 3 32 32 H 1.07998 * 120.27492 * 179.97438 * 11 6 5 33 33 H 1.08004 * 120.82596 * 179.97438 * 12 11 6 34 34 H 0.97004 * 120.00102 * 180.02562 * 20 19 17 35 35 H 1.09006 * 109.47032 * 208.75892 * 25 16 14 36 36 H 1.08998 * 109.47188 * 328.75609 * 25 16 14 37 37 H 1.09000 * 109.47009 * 300.00374 * 26 25 16 38 38 H 1.09006 * 109.47044 * 59.99733 * 26 25 16 39 39 H 1.08994 * 109.47188 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1509 0.4734 -0.0040 6 6 5.4636 0.6005 0.0020 7 6 6.3265 -0.6351 0.0032 8 9 6.5873 -1.0204 1.3225 9 9 5.6600 -1.6699 -0.6618 10 9 7.5330 -0.3619 -0.6501 11 6 6.0631 1.8475 0.0076 12 6 5.2723 2.9825 0.0065 13 6 3.8809 2.8235 0.0001 14 6 2.9913 3.9989 -0.0008 15 8 2.1359 4.1148 0.8561 16 7 3.1220 4.9423 -0.9544 17 6 2.3663 6.0826 -0.8974 18 1 1.8027 6.3127 -0.0053 19 6 2.3248 6.9440 -1.9876 20 7 2.8649 6.5844 -3.1300 21 14 1.5008 8.6130 -1.8285 22 1 0.9749 8.7757 -0.4493 23 1 2.4914 9.6830 -2.1094 24 1 0.3816 8.7071 -2.7998 25 6 4.0727 4.7477 -2.0518 26 6 3.3822 4.0088 -3.1998 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 7.1396 1.9341 0.0129 33 1 5.7169 3.9668 0.0112 34 1 2.8362 7.1857 -3.8906 35 1 4.4250 5.7174 -2.4037 36 1 4.9199 4.1598 -1.6987 37 1 3.0299 3.0391 -2.8480 38 1 2.5350 4.5968 -3.5529 39 1 4.0894 3.8644 -4.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345726209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:38 Heat of formation + Delta-G solvation = -161.695489 kcal Electronic energy + Delta-G solvation = -29717.053929 eV Core-core repulsion = 25018.636107 eV Total energy + Delta-G solvation = -4698.417822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.19582 -47.74064 -47.63466 -40.78607 -38.46106 -37.91832 -35.20499 -32.98286 -32.12520 -31.59135 -30.43049 -29.52815 -27.11648 -25.08813 -23.88518 -23.08078 -22.48548 -21.89218 -19.85885 -19.04692 -18.57717 -18.50616 -17.48122 -17.10948 -16.56668 -16.16188 -15.94907 -15.15542 -14.63938 -14.50099 -14.27460 -14.12967 -14.06895 -13.83550 -13.80760 -13.79989 -13.74726 -13.63446 -13.25259 -12.80686 -12.62853 -12.47526 -12.29842 -12.14034 -11.77766 -11.46337 -11.34767 -11.19337 -10.84842 -10.68835 -10.43468 -10.26643 -10.17614 -9.92643 -9.66888 -9.01577 -8.64704 -8.38888 -7.86509 -6.40638 -3.95429 0.65185 1.25474 2.40044 3.03432 3.11875 3.17628 3.24049 3.35323 3.48123 3.81891 3.91246 4.01202 4.36774 4.58975 4.69764 4.89473 5.00397 5.09451 5.12925 5.16433 5.24286 5.44648 5.50553 5.73868 5.82081 5.95999 6.01444 6.14732 6.18379 6.30237 6.54845 6.63633 6.75182 7.22985 7.32534 7.39928 7.62135 7.68420 7.93108 8.37108 9.01689 9.24395 9.80894 10.50095 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.003998 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.543205 B = 7001.990745 C = 7971.753887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.275 6.275 4 C 0.358 3.642 5 N -0.508 5.508 6 C 0.064 3.936 7 C 0.526 3.474 8 F -0.173 7.173 9 F -0.167 7.167 10 F -0.171 7.171 11 C -0.161 4.161 12 C -0.028 4.028 13 C -0.116 4.116 14 C 0.477 3.523 15 O -0.573 6.573 16 N -0.424 5.424 17 C -0.286 4.286 18 H 0.107 0.893 19 C 0.023 3.977 20 N -0.869 5.869 21 Si 0.934 3.066 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.111 3.889 26 C -0.141 4.141 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.268 0.732 35 H 0.116 0.884 36 H 0.033 0.967 37 H 0.015 0.985 38 H 0.093 0.907 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -10.740 1.453 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.180 6.180 4 C 0.176 3.824 5 N -0.233 5.233 6 C -0.074 4.074 7 C 0.471 3.529 8 F -0.154 7.154 9 F -0.148 7.148 10 F -0.153 7.153 11 C -0.182 4.182 12 C -0.054 4.054 13 C -0.123 4.123 14 C 0.265 3.735 15 O -0.458 6.458 16 N -0.141 5.141 17 C -0.414 4.414 18 H 0.125 0.875 19 C -0.179 4.179 20 N -0.509 5.509 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.012 4.012 26 C -0.199 4.199 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.051 0.949 37 H 0.034 0.966 38 H 0.112 0.888 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.512 -11.224 1.653 12.613 hybrid contribution 0.292 0.945 -0.236 1.017 sum 5.804 -10.279 1.417 11.889 Atomic orbital electron populations 1.21791 0.92854 1.02402 1.03868 1.22667 0.95224 0.81220 1.02201 1.86452 1.15282 1.29874 1.86389 1.19486 0.84126 0.87755 0.91008 1.66649 1.04372 1.33812 1.18454 1.20402 0.90257 0.92176 1.04586 1.17869 0.78013 0.83041 0.74015 1.93227 1.94285 1.91982 1.35910 1.93216 1.80303 1.60689 1.80604 1.93199 1.46936 1.93753 1.81385 1.21521 1.01904 0.91253 1.03499 1.21642 0.91120 0.99611 0.93001 1.20584 0.94772 0.93819 1.03135 1.17244 0.86730 0.82633 0.86942 1.90664 1.36986 1.77508 1.40664 1.43830 1.34096 1.15433 1.20727 1.19953 1.24690 0.95290 1.01482 0.87478 1.25376 0.97674 1.00511 0.94356 1.70095 1.43679 1.35851 1.01310 0.85720 0.78690 0.80725 0.78821 1.19132 1.20526 1.20610 1.21871 0.89789 1.02647 0.86861 1.22123 1.02709 0.97588 0.97453 0.91464 0.90536 0.91363 0.91671 0.91718 0.83233 0.82488 0.92084 0.86598 0.94896 0.96632 0.88826 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 37.16 0.38 -1.55 16 2 C 0.06 0.94 6.03 37.16 0.22 1.17 16 3 O -0.27 -5.50 9.35 -20.27 -0.19 -5.69 16 4 C 0.36 7.01 7.50 -16.59 -0.12 6.88 16 5 N -0.51 -8.82 8.80 -9.19 -0.08 -8.90 16 6 C 0.06 0.97 6.30 -82.52 -0.52 0.45 16 7 C 0.53 7.00 3.43 36.01 0.12 7.12 16 8 F -0.17 -2.27 17.30 2.25 0.04 -2.23 16 9 F -0.17 -2.34 17.03 2.25 0.04 -2.30 16 10 F -0.17 -2.05 16.42 2.25 0.04 -2.02 16 11 C -0.16 -2.20 9.41 -39.50 -0.37 -2.57 16 12 C -0.03 -0.45 7.69 -38.87 -0.30 -0.75 16 13 C -0.12 -2.34 4.97 -104.69 -0.52 -2.86 16 14 C 0.48 11.68 6.77 -12.53 -0.08 11.59 16 15 O -0.57 -16.07 16.42 2.96 0.05 -16.02 16 16 N -0.42 -10.40 2.62 -116.04 -0.30 -10.70 16 17 C -0.29 -7.50 9.48 -15.00 -0.14 -7.64 16 18 H 0.11 2.97 7.26 -52.49 -0.38 2.58 16 19 C 0.02 0.56 5.26 -17.46 -0.09 0.47 16 20 N -0.87 -20.81 7.61 55.50 0.42 -20.39 16 21 Si 0.93 19.46 29.56 -169.99 -5.03 14.43 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 25 C 0.11 2.39 5.15 -4.04 -0.02 2.37 16 26 C -0.14 -2.99 9.60 37.16 0.36 -2.64 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.94 8.10 -51.93 -0.42 0.51 16 31 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 32 H 0.15 1.53 7.58 -52.49 -0.40 1.13 16 33 H 0.16 2.22 7.46 -52.48 -0.39 1.83 16 34 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 35 H 0.12 2.64 5.83 -51.93 -0.30 2.34 16 36 H 0.03 0.61 4.44 -51.93 -0.23 0.38 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 2.24 6.14 -51.93 -0.32 1.92 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -29.19 342.21 -5.06 -34.25 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.11 Total: 2.38 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.09 Total: 12.04 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.04 Total: -40.00 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.14 Total: -21.71 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.55 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.19 -5.06 -34.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345726209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.450 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds