Wall clock time and date at job start Tue Mar 31 2020 16:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42892 * 109.47041 * 2 1 4 4 C 1.35429 * 117.00039 * 179.97438 * 3 2 1 5 5 N 1.32220 * 119.80588 * 0.25067 * 4 3 2 6 6 C 1.31888 * 121.80568 * 180.28787 * 5 4 3 7 7 C 1.50706 * 119.40102 * 179.70110 * 6 5 4 8 8 F 1.39899 * 109.47154 * 270.02501 * 7 6 5 9 9 F 1.39901 * 109.46749 * 30.02158 * 7 6 5 10 10 F 1.39894 * 109.47248 * 150.01989 * 7 6 5 11 11 C 1.38368 * 121.20448 * 359.72498 * 6 5 4 12 12 C 1.38327 * 119.45829 * 359.97438 * 11 6 5 13 13 C 1.40048 * 118.34638 * 0.02562 * 12 11 6 14 14 C 1.47416 * 120.60023 * 179.97438 * 13 12 11 15 15 O 1.21636 * 119.99396 * 234.75327 * 14 13 12 16 16 N 1.34772 * 120.00400 * 55.03080 * 14 13 12 17 17 C 1.36908 * 119.99807 * 184.99605 * 16 14 13 18 18 H 1.08000 * 119.99867 * 11.18490 * 17 16 14 19 19 C 1.39017 * 119.99698 * 191.17687 * 17 16 14 20 20 N 1.31378 * 120.00143 * 8.85399 * 19 17 16 21 21 Si 1.86803 * 120.00123 * 188.85152 * 19 17 16 22 22 H 1.48501 * 109.46677 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47544 * 120.00146 * 21 19 17 24 24 H 1.48499 * 109.47236 * 240.00599 * 21 19 17 25 25 C 1.46496 * 119.99932 * 4.99622 * 16 14 13 26 26 C 1.52998 * 109.47256 * 88.75980 * 25 16 14 27 27 H 1.08997 * 109.46794 * 60.00225 * 1 2 3 28 28 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46899 * 299.99739 * 1 2 3 30 30 H 1.08998 * 109.46899 * 240.00261 * 2 1 3 31 31 H 1.09002 * 109.46990 * 120.00204 * 2 1 3 32 32 H 1.07998 * 120.27492 * 179.97438 * 11 6 5 33 33 H 1.08004 * 120.82596 * 179.97438 * 12 11 6 34 34 H 0.97004 * 120.00102 * 180.02562 * 20 19 17 35 35 H 1.09006 * 109.47032 * 208.75892 * 25 16 14 36 36 H 1.08998 * 109.47188 * 328.75609 * 25 16 14 37 37 H 1.09000 * 109.47009 * 300.00374 * 26 25 16 38 38 H 1.09006 * 109.47044 * 59.99733 * 26 25 16 39 39 H 1.08994 * 109.47188 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1509 0.4734 -0.0040 6 6 5.4636 0.6005 0.0020 7 6 6.3265 -0.6351 0.0032 8 9 6.5873 -1.0204 1.3225 9 9 5.6600 -1.6699 -0.6618 10 9 7.5330 -0.3619 -0.6501 11 6 6.0631 1.8475 0.0076 12 6 5.2723 2.9825 0.0065 13 6 3.8809 2.8235 0.0001 14 6 2.9913 3.9989 -0.0008 15 8 2.1359 4.1148 0.8561 16 7 3.1220 4.9423 -0.9544 17 6 2.3663 6.0826 -0.8974 18 1 1.8027 6.3127 -0.0053 19 6 2.3248 6.9440 -1.9876 20 7 2.8649 6.5844 -3.1300 21 14 1.5008 8.6130 -1.8285 22 1 0.9749 8.7757 -0.4493 23 1 2.4914 9.6830 -2.1094 24 1 0.3816 8.7071 -2.7998 25 6 4.0727 4.7477 -2.0518 26 6 3.3822 4.0088 -3.1998 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 7.1396 1.9341 0.0129 33 1 5.7169 3.9668 0.0112 34 1 2.8362 7.1857 -3.8906 35 1 4.4250 5.7174 -2.4037 36 1 4.9199 4.1598 -1.6987 37 1 3.0299 3.0391 -2.8480 38 1 2.5350 4.5968 -3.5529 39 1 4.0894 3.8644 -4.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345726209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:37 Heat of formation + Delta-G solvation = -179.733215 kcal Electronic energy + Delta-G solvation = -29717.836104 eV Core-core repulsion = 25018.636107 eV Total energy + Delta-G solvation = -4699.199996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.24840 -48.75992 -48.71136 -42.18556 -40.19908 -39.29193 -37.09978 -34.50695 -33.33332 -33.32635 -31.67801 -31.31002 -28.48649 -26.80220 -25.15102 -24.51290 -23.95009 -23.30147 -21.51658 -20.27042 -19.64295 -19.61818 -18.99545 -18.67163 -18.24639 -17.47746 -17.33786 -16.90658 -16.00382 -15.76870 -15.61172 -15.51760 -15.18833 -15.13860 -15.03240 -15.01256 -14.92168 -14.85441 -14.82316 -14.51264 -14.17048 -13.62797 -13.53619 -13.51744 -13.27563 -13.19004 -12.87079 -12.65930 -12.55158 -12.21573 -12.04474 -11.91146 -11.82576 -11.28410 -11.15481 -10.83299 -10.46130 -9.83886 -9.69856 -8.26209 -5.92035 -0.67819 -0.04091 1.23594 1.36211 1.45233 1.57581 1.79235 1.89177 2.18141 2.32946 2.36138 2.76997 2.93121 3.09683 3.28024 3.48166 3.65121 3.73289 3.88577 3.99145 4.02828 4.10828 4.33665 4.40968 4.51184 4.73541 4.77732 4.82871 4.85784 4.90747 5.03632 5.08230 5.15144 5.37288 5.52943 5.86542 6.00266 6.03698 6.31016 6.50539 7.12091 7.39017 7.94885 8.62645 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.003998 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.543205 B = 7001.990745 C = 7971.753887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.309 6.309 4 C 0.344 3.656 5 N -0.511 5.511 6 C 0.064 3.936 7 C 0.537 3.463 8 F -0.169 7.169 9 F -0.170 7.170 10 F -0.157 7.157 11 C -0.140 4.140 12 C -0.016 4.016 13 C -0.150 4.150 14 C 0.472 3.528 15 O -0.626 6.626 16 N -0.432 5.432 17 C -0.333 4.333 18 H 0.076 0.924 19 C 0.001 3.999 20 N -0.872 5.872 21 Si 0.993 3.007 22 H -0.279 1.279 23 H -0.263 1.263 24 H -0.276 1.276 25 C 0.115 3.885 26 C -0.130 4.130 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.197 0.803 33 H 0.178 0.822 34 H 0.275 0.725 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.006 0.994 38 H 0.064 0.936 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.936 -11.665 0.642 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.215 6.215 4 C 0.164 3.836 5 N -0.235 5.235 6 C -0.075 4.075 7 C 0.481 3.519 8 F -0.150 7.150 9 F -0.152 7.152 10 F -0.139 7.139 11 C -0.161 4.161 12 C -0.041 4.041 13 C -0.157 4.157 14 C 0.261 3.739 15 O -0.514 6.514 16 N -0.148 5.148 17 C -0.460 4.460 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.511 5.511 21 Si 0.817 3.183 22 H -0.203 1.203 23 H -0.188 1.188 24 H -0.202 1.202 25 C -0.007 4.007 26 C -0.188 4.188 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.214 0.786 33 H 0.195 0.805 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.025 0.975 38 H 0.083 0.917 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.942 -12.171 0.802 14.555 hybrid contribution -0.359 1.092 0.014 1.149 sum 7.583 -11.079 0.816 13.451 Atomic orbital electron populations 1.21833 0.91294 1.04446 1.02808 1.22948 0.96507 0.79598 1.02746 1.86428 1.16051 1.32487 1.86573 1.19538 0.84330 0.88037 0.91714 1.66701 1.05323 1.32906 1.18602 1.20988 0.89860 0.93894 1.02730 1.17543 0.78026 0.82099 0.74213 1.93244 1.94219 1.91839 1.35724 1.93219 1.80525 1.60721 1.80702 1.93236 1.45892 1.93609 1.81114 1.21937 1.03824 0.89474 1.00838 1.21916 0.89400 1.01542 0.91273 1.20362 0.95969 0.92322 1.07027 1.17844 0.86702 0.83471 0.85921 1.90599 1.39315 1.79022 1.42470 1.43970 1.34332 1.15215 1.21305 1.19785 1.27008 0.97636 1.01599 0.90599 1.25984 0.97644 1.02740 0.93725 1.70169 1.43050 1.36521 1.01319 0.84875 0.78099 0.77350 0.78002 1.20347 1.18807 1.20190 1.21908 0.90086 1.02538 0.86200 1.21973 1.02243 0.96432 0.98128 0.92483 0.86851 0.92408 0.91001 0.91075 0.78595 0.80517 0.91436 0.87742 0.91708 0.97476 0.91714 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 10.28 71.98 0.74 -3.00 16 2 C 0.06 1.73 6.03 71.98 0.43 2.16 16 3 O -0.31 -12.83 9.35 -85.06 -0.79 -13.63 16 4 C 0.34 13.55 7.50 85.15 0.64 14.19 16 5 N -0.51 -17.02 8.80 -296.00 -2.60 -19.63 16 6 C 0.06 1.75 6.30 42.58 0.27 2.01 16 7 C 0.54 12.40 3.43 71.24 0.24 12.65 16 8 F -0.17 -3.88 17.30 44.97 0.78 -3.11 16 9 F -0.17 -4.30 17.03 44.97 0.77 -3.54 16 10 F -0.16 -3.07 16.42 44.97 0.74 -2.33 16 11 C -0.14 -3.29 9.41 22.32 0.21 -3.08 16 12 C -0.02 -0.46 7.69 22.73 0.17 -0.29 16 13 C -0.15 -6.08 4.97 -19.91 -0.10 -6.18 16 14 C 0.47 24.05 6.77 86.66 0.59 24.64 16 15 O -0.63 -37.33 16.42 -1.96 -0.03 -37.36 16 16 N -0.43 -21.88 2.62 -639.27 -1.67 -23.56 16 17 C -0.33 -18.24 9.48 84.09 0.80 -17.44 16 18 H 0.08 4.53 7.26 -2.91 -0.02 4.50 16 19 C 0.00 0.06 5.26 84.95 0.45 0.51 16 20 N -0.87 -41.71 7.61 21.67 0.16 -41.55 16 21 Si 0.99 40.35 29.56 68.60 2.03 42.38 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 25 C 0.11 4.89 5.15 86.38 0.44 5.33 16 26 C -0.13 -5.48 9.60 71.98 0.69 -4.78 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 31 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 32 H 0.20 2.80 7.58 -2.91 -0.02 2.78 16 33 H 0.18 4.49 7.46 -2.91 -0.02 4.47 16 34 H 0.27 12.26 8.31 -92.71 -0.77 11.49 16 35 H 0.10 4.70 5.83 -2.38 -0.01 4.69 16 36 H 0.06 2.29 4.44 -2.39 -0.01 2.28 16 37 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.06 3.12 6.14 -2.38 -0.01 3.11 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -67.33 342.21 6.06 -61.28 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.11 Total: 14.31 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 5.58 Total: 26.72 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -4.11 Total: -84.73 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.83 Total: -50.99 kcal Atomic # 9 Polarization: -11.26 SS G_CDS: 2.28 Total: -8.97 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -67.33 6.06 -61.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345726209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.456 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds