Wall clock time and date at job start Tue Mar 31 2020 16:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47066 * 2 1 4 4 C 1.36169 * 127.11270 * 260.12932 * 3 2 1 5 5 N 1.30584 * 107.44362 * 179.73948 * 4 3 2 6 6 N 1.28546 * 110.08033 * 359.97438 * 5 4 3 7 7 C 1.31496 * 109.72530 * 359.97438 * 6 5 4 8 8 C 1.47813 * 126.51451 * 180.02562 * 7 6 5 9 9 C 1.39490 * 120.18194 * 229.27996 * 8 7 6 10 10 C 1.37945 * 119.92498 * 179.69847 * 9 8 7 11 11 C 1.38446 * 120.29248 * 0.58429 * 10 9 8 12 12 C 1.38140 * 120.36878 * 359.71476 * 11 10 9 13 13 C 1.38732 * 120.05983 * 359.97438 * 12 11 10 14 14 N 1.39646 * 120.14264 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00287 * 34.65093 * 14 13 12 16 16 O 1.21285 * 119.99707 * 355.63442 * 15 14 13 17 17 C 1.50703 * 120.00271 * 175.63884 * 15 14 13 18 18 S 1.81001 * 109.47093 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99878 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99827 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99621 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99592 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00581 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46686 * 89.99758 * 23 21 19 25 25 H 1.48493 * 109.47107 * 210.00204 * 23 21 19 26 26 H 1.48504 * 109.46884 * 330.00205 * 23 21 19 27 27 H 1.08998 * 109.46676 * 59.99847 * 1 2 3 28 28 H 1.08998 * 109.46607 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47056 * 299.99536 * 1 2 3 30 30 H 1.09004 * 109.47184 * 240.00209 * 2 1 3 31 31 H 1.08994 * 109.47549 * 120.00338 * 2 1 3 32 32 H 1.07998 * 126.27731 * 359.74204 * 4 3 2 33 33 H 1.07997 * 120.03478 * 359.97438 * 9 8 7 34 34 H 1.07999 * 119.84848 * 180.29634 * 10 9 8 35 35 H 1.08004 * 119.81648 * 179.74078 * 11 10 9 36 36 H 1.07992 * 119.97385 * 180.02562 * 12 11 10 37 37 H 0.96999 * 120.00101 * 214.64919 * 14 13 12 38 38 H 1.08996 * 109.46773 * 299.99924 * 17 15 14 39 39 H 1.09008 * 109.46926 * 59.99865 * 17 15 14 40 40 H 0.97002 * 120.00083 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4677 2.0938 -1.0698 5 7 2.8013 3.2801 -0.6378 6 7 2.5928 3.3636 0.6279 7 6 2.1103 2.2247 1.0743 8 6 1.7386 1.9140 2.4708 9 6 2.1989 0.7442 3.0753 10 6 1.8539 0.4625 4.3809 11 6 1.0422 1.3302 5.0915 12 6 0.5745 2.4891 4.5028 13 6 0.9174 2.7903 3.1927 14 7 0.4452 3.9611 2.5957 15 6 0.2906 5.0786 3.3330 16 8 0.4856 5.0473 4.5297 17 6 -0.1246 6.3670 2.6707 18 16 -0.2461 7.6742 3.9168 19 6 -0.7318 9.0258 2.8960 20 1 -0.8628 8.8805 1.8339 21 6 -0.9461 10.2771 3.4571 22 7 -1.3094 11.2867 2.6946 23 14 -0.7188 10.5285 5.2941 24 1 0.6868 10.9200 5.5698 25 1 -1.6326 11.6007 5.7637 26 1 -1.0300 9.2646 6.0089 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.5357 1.7423 -2.0887 33 1 2.8282 0.0619 2.5232 34 1 2.2149 -0.4412 4.8492 35 1 0.7735 1.1001 6.1119 36 1 -0.0579 3.1617 5.0631 37 1 0.2284 3.9700 1.6502 38 1 0.6168 6.6460 1.9220 39 1 -1.0937 6.2326 2.1900 40 1 -1.4595 12.1612 3.0866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354593084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:31 Heat of formation + Delta-G solvation = 74.742530 kcal Electronic energy + Delta-G solvation = -25306.878008 eV Core-core repulsion = 21635.615271 eV Total energy + Delta-G solvation = -3671.262738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.19675 -40.43987 -38.44254 -36.12503 -34.76267 -32.52672 -32.40888 -31.03477 -30.80802 -29.56627 -28.32281 -25.59378 -24.94393 -23.46082 -23.30346 -22.23274 -20.90791 -20.41970 -18.22440 -17.76363 -17.48315 -16.70188 -16.24748 -16.14813 -15.63141 -15.34326 -15.06817 -14.94167 -14.54047 -14.35577 -13.95528 -13.77388 -13.59057 -13.46075 -13.16486 -12.84395 -12.77796 -12.25005 -12.11162 -12.01260 -11.66492 -11.54361 -11.24883 -10.98637 -10.63006 -10.62206 -10.52035 -10.41154 -9.87156 -9.84430 -9.58409 -8.97767 -8.88090 -8.50439 -8.21476 -6.90131 -6.25974 -3.98106 0.67466 1.13182 1.61450 2.09420 2.64977 2.69424 2.82465 3.22696 3.36119 3.51668 3.54865 3.62347 3.89772 3.99043 4.25552 4.34533 4.35196 4.48204 4.64182 4.66822 4.80515 4.90911 4.96083 5.06879 5.10354 5.13044 5.18596 5.30439 5.35262 5.48648 5.54438 5.68696 5.75449 5.81002 6.03676 6.06003 6.10910 6.26445 6.38064 6.53246 6.82388 7.36974 7.97163 8.27555 8.45707 8.50567 9.19771 10.83342 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.003131 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.668511 B = 8940.048647 C =10149.106582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.475 5.475 4 C 0.153 3.847 5 N -0.292 5.292 6 N -0.269 5.269 7 C 0.219 3.781 8 C -0.058 4.058 9 C -0.082 4.082 10 C -0.141 4.141 11 C -0.082 4.082 12 C -0.123 4.123 13 C 0.202 3.798 14 N -0.670 5.670 15 C 0.538 3.462 16 O -0.498 6.498 17 C -0.124 4.124 18 S -0.137 6.137 19 C -0.521 4.521 20 H 0.089 0.911 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.220 0.780 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.410 0.590 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 -30.810 -4.906 31.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.167 5.167 4 C -0.134 4.134 5 N -0.131 5.131 6 N -0.110 5.110 7 C -0.045 4.045 8 C -0.064 4.064 9 C -0.102 4.102 10 C -0.159 4.159 11 C -0.101 4.101 12 C -0.143 4.143 13 C 0.104 3.896 14 N -0.314 5.314 15 C 0.326 3.674 16 O -0.371 6.371 17 C -0.274 4.274 18 S 0.089 5.911 19 C -0.668 4.668 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.236 0.764 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.246 0.754 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.869 -29.132 -3.031 29.691 hybrid contribution -0.575 -0.945 -1.497 1.861 sum 4.294 -30.076 -4.528 30.717 Atomic orbital electron populations 1.22159 0.93386 1.03697 1.03650 1.21995 0.96314 0.78797 1.05104 1.46900 1.48230 1.13804 1.07773 1.26646 1.01610 0.90149 0.94984 1.74300 1.18881 1.16177 1.03789 1.74820 1.15184 1.17863 1.03093 1.22865 1.03679 0.88174 0.89812 1.17185 1.02012 0.98351 0.88831 1.20867 0.98815 0.95152 0.95397 1.20962 1.00369 1.00602 0.94017 1.21232 0.95882 0.93119 0.99903 1.21412 1.01482 0.97476 0.93965 1.17678 0.92819 0.86025 0.93086 1.43526 1.65410 1.08724 1.13751 1.20475 0.75672 0.84089 0.87180 1.90683 1.47428 1.84636 1.14351 1.23280 1.05168 0.94855 1.04117 1.84720 1.90634 1.03276 1.12446 1.22309 1.53351 0.94288 0.96894 0.89287 1.24708 0.93282 0.94647 0.98642 1.69944 1.44715 1.01128 1.35861 0.86735 0.79319 0.80476 0.85312 1.19152 1.19945 1.15943 0.91590 0.90015 0.91425 0.88162 0.88572 0.76400 0.85971 0.85444 0.85160 0.83167 0.75413 0.87694 0.88216 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.23 37.16 0.38 -0.33 16 2 C 0.10 0.41 6.63 -4.04 -0.03 0.38 16 3 N -0.47 -3.96 2.81 -115.54 -0.32 -4.29 16 4 C 0.15 1.39 12.77 -89.27 -1.14 0.25 16 5 N -0.29 -4.14 12.19 29.83 0.36 -3.77 16 6 N -0.27 -4.18 11.76 32.49 0.38 -3.80 16 7 C 0.22 2.65 6.64 -154.22 -1.02 1.62 16 8 C -0.06 -0.68 5.68 -104.81 -0.60 -1.27 16 9 C -0.08 -0.72 8.79 -39.22 -0.34 -1.07 16 10 C -0.14 -1.15 10.03 -39.61 -0.40 -1.55 16 11 C -0.08 -0.81 10.03 -39.54 -0.40 -1.20 16 12 C -0.12 -1.61 8.69 -39.44 -0.34 -1.95 16 13 C 0.20 2.76 6.32 -83.41 -0.53 2.23 16 14 N -0.67 -10.02 4.83 -9.66 -0.05 -10.07 16 15 C 0.54 9.98 7.69 -10.98 -0.08 9.90 16 16 O -0.50 -10.50 13.28 5.55 0.07 -10.43 16 17 C -0.12 -2.51 6.16 36.01 0.22 -2.29 16 18 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 19 C -0.52 -15.28 10.04 30.94 0.31 -14.97 16 20 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 21 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 22 N -0.88 -26.95 13.97 55.49 0.78 -26.18 16 23 Si 0.86 22.03 27.74 -169.99 -4.72 17.31 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.15 8.13 -51.93 -0.42 -0.28 16 31 H 0.10 0.32 6.00 -51.93 -0.31 0.01 16 32 H 0.22 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.79 6.88 -52.49 -0.36 0.43 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.15 2.23 6.19 -52.49 -0.32 1.91 16 37 H 0.41 5.57 7.98 -40.82 -0.33 5.24 16 38 H 0.10 2.10 8.14 -51.92 -0.42 1.68 16 39 H 0.10 1.85 8.14 -51.91 -0.42 1.43 16 40 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -37.31 357.65 -8.86 -46.17 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.70 Total: 2.67 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -4.06 Total: -7.49 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 1.15 Total: -48.11 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.31 -8.86 -46.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354593084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.911 kcal (2) G-P(sol) polarization free energy of solvation -37.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds