Wall clock time and date at job start Tue Mar 31 2020 16:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47066 * 2 1 4 4 C 1.36169 * 127.11270 * 260.12932 * 3 2 1 5 5 N 1.30584 * 107.44362 * 179.73948 * 4 3 2 6 6 N 1.28546 * 110.08033 * 359.97438 * 5 4 3 7 7 C 1.31496 * 109.72530 * 359.97438 * 6 5 4 8 8 C 1.47813 * 126.51451 * 180.02562 * 7 6 5 9 9 C 1.39490 * 120.18194 * 229.27996 * 8 7 6 10 10 C 1.37945 * 119.92498 * 179.69847 * 9 8 7 11 11 C 1.38446 * 120.29248 * 0.58429 * 10 9 8 12 12 C 1.38140 * 120.36878 * 359.71476 * 11 10 9 13 13 C 1.38732 * 120.05983 * 359.97438 * 12 11 10 14 14 N 1.39646 * 120.14264 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00287 * 34.65093 * 14 13 12 16 16 O 1.21285 * 119.99707 * 355.63442 * 15 14 13 17 17 C 1.50703 * 120.00271 * 175.63884 * 15 14 13 18 18 S 1.81001 * 109.47093 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99878 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99827 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99621 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99592 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00581 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46686 * 89.99758 * 23 21 19 25 25 H 1.48493 * 109.47107 * 210.00204 * 23 21 19 26 26 H 1.48504 * 109.46884 * 330.00205 * 23 21 19 27 27 H 1.08998 * 109.46676 * 59.99847 * 1 2 3 28 28 H 1.08998 * 109.46607 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47056 * 299.99536 * 1 2 3 30 30 H 1.09004 * 109.47184 * 240.00209 * 2 1 3 31 31 H 1.08994 * 109.47549 * 120.00338 * 2 1 3 32 32 H 1.07998 * 126.27731 * 359.74204 * 4 3 2 33 33 H 1.07997 * 120.03478 * 359.97438 * 9 8 7 34 34 H 1.07999 * 119.84848 * 180.29634 * 10 9 8 35 35 H 1.08004 * 119.81648 * 179.74078 * 11 10 9 36 36 H 1.07992 * 119.97385 * 180.02562 * 12 11 10 37 37 H 0.96999 * 120.00101 * 214.64919 * 14 13 12 38 38 H 1.08996 * 109.46773 * 299.99924 * 17 15 14 39 39 H 1.09008 * 109.46926 * 59.99865 * 17 15 14 40 40 H 0.97002 * 120.00083 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4677 2.0938 -1.0698 5 7 2.8013 3.2801 -0.6378 6 7 2.5928 3.3636 0.6279 7 6 2.1103 2.2247 1.0743 8 6 1.7386 1.9140 2.4708 9 6 2.1989 0.7442 3.0753 10 6 1.8539 0.4625 4.3809 11 6 1.0422 1.3302 5.0915 12 6 0.5745 2.4891 4.5028 13 6 0.9174 2.7903 3.1927 14 7 0.4452 3.9611 2.5957 15 6 0.2906 5.0786 3.3330 16 8 0.4856 5.0473 4.5297 17 6 -0.1246 6.3670 2.6707 18 16 -0.2461 7.6742 3.9168 19 6 -0.7318 9.0258 2.8960 20 1 -0.8628 8.8805 1.8339 21 6 -0.9461 10.2771 3.4571 22 7 -1.3094 11.2867 2.6946 23 14 -0.7188 10.5285 5.2941 24 1 0.6868 10.9200 5.5698 25 1 -1.6326 11.6007 5.7637 26 1 -1.0300 9.2646 6.0089 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.5357 1.7423 -2.0887 33 1 2.8282 0.0619 2.5232 34 1 2.2149 -0.4412 4.8492 35 1 0.7735 1.1001 6.1119 36 1 -0.0579 3.1617 5.0631 37 1 0.2284 3.9700 1.6502 38 1 0.6168 6.6460 1.9220 39 1 -1.0937 6.2326 2.1900 40 1 -1.4595 12.1612 3.0866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354593084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:30 Heat of formation + Delta-G solvation = 51.036006 kcal Electronic energy + Delta-G solvation = -25307.906000 eV Core-core repulsion = 21635.615271 eV Total energy + Delta-G solvation = -3672.290730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.98772 -41.62303 -39.52931 -36.72505 -35.94177 -34.70238 -33.36895 -32.06210 -31.53912 -30.51999 -29.50174 -27.88808 -25.51536 -24.32339 -24.13780 -22.99853 -21.81140 -21.56921 -19.98813 -18.86454 -18.36225 -18.11215 -17.16056 -17.06976 -16.96624 -16.72301 -16.16968 -16.12134 -15.54412 -15.52398 -15.13218 -14.89484 -14.74229 -14.67302 -14.18871 -14.03080 -13.64643 -13.38356 -13.27976 -13.03931 -12.88292 -12.71825 -12.65019 -12.38657 -12.17684 -11.88777 -11.53027 -11.41301 -11.19573 -11.17862 -11.00861 -10.72835 -10.62392 -9.72760 -9.21214 -9.02977 -8.53948 -6.26182 -0.15146 0.27331 0.87120 0.89579 1.30804 1.36700 1.44078 1.48777 1.51951 1.83035 2.02531 2.23226 2.63286 2.70824 2.83990 3.14048 3.56094 3.63600 3.73990 3.84951 4.03621 4.07839 4.11720 4.24218 4.31639 4.34178 4.39028 4.43143 4.47899 4.55022 4.78049 4.84263 4.95240 5.10623 5.19470 5.20214 5.28585 5.40680 5.51675 5.67982 5.89386 5.95352 6.08575 6.13662 6.88471 6.90314 7.67901 8.58931 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.003131 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.668511 B = 8940.048647 C =10149.106582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.465 5.465 4 C 0.175 3.825 5 N -0.350 5.350 6 N -0.325 5.325 7 C 0.214 3.786 8 C -0.060 4.060 9 C -0.074 4.074 10 C -0.121 4.121 11 C -0.082 4.082 12 C -0.143 4.143 13 C 0.166 3.834 14 N -0.655 5.655 15 C 0.543 3.457 16 O -0.529 6.529 17 C -0.112 4.112 18 S -0.156 6.156 19 C -0.534 4.534 20 H 0.058 0.942 21 C 0.046 3.954 22 N -0.917 5.917 23 Si 0.917 3.083 24 H -0.263 1.263 25 H -0.255 1.255 26 H -0.233 1.233 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.042 0.958 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.266 0.734 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.414 0.586 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 -35.082 -4.647 35.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.156 5.156 4 C -0.113 4.113 5 N -0.189 5.189 6 N -0.166 5.166 7 C -0.053 4.053 8 C -0.065 4.065 9 C -0.094 4.094 10 C -0.139 4.139 11 C -0.101 4.101 12 C -0.164 4.164 13 C 0.069 3.931 14 N -0.299 5.299 15 C 0.330 3.670 16 O -0.405 6.405 17 C -0.263 4.263 18 S 0.071 5.929 19 C -0.682 4.682 20 H 0.077 0.923 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.738 3.262 24 H -0.187 1.187 25 H -0.179 1.179 26 H -0.157 1.157 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.155 0.845 31 H 0.128 0.872 32 H 0.281 0.719 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.171 0.829 36 H 0.141 0.859 37 H 0.251 0.749 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.814 -33.459 -2.801 34.076 hybrid contribution -0.849 0.114 -1.733 1.933 sum 4.965 -33.345 -4.534 34.017 Atomic orbital electron populations 1.22146 0.93577 1.04757 1.02118 1.22439 0.96083 0.76570 1.07628 1.47117 1.47209 1.14890 1.06347 1.27479 0.98579 0.88733 0.96520 1.74175 1.21749 1.19220 1.03728 1.74692 1.17414 1.20242 1.04203 1.22868 1.03438 0.88277 0.90711 1.17334 1.01600 0.98805 0.88748 1.21273 0.98059 0.94235 0.95841 1.21428 0.98118 1.01003 0.93380 1.21535 0.95505 0.91993 1.01028 1.21335 1.02394 0.98754 0.93873 1.17901 0.95154 0.86104 0.93919 1.43179 1.64657 1.08472 1.13560 1.20011 0.75826 0.84354 0.86790 1.90669 1.49344 1.85120 1.15342 1.23224 1.06278 0.94259 1.02529 1.84516 1.90529 1.03775 1.14125 1.22457 1.53440 0.96125 0.96167 0.92337 1.25602 0.92850 0.94319 1.03205 1.70025 1.45597 1.01860 1.37980 0.85840 0.79710 0.80870 0.79776 1.18727 1.17946 1.15727 0.92228 0.87613 0.93876 0.84492 0.87216 0.71860 0.82761 0.81314 0.82900 0.85872 0.74928 0.87707 0.86642 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.23 71.98 0.74 -0.18 16 2 C 0.09 0.38 6.63 86.38 0.57 0.95 16 3 N -0.46 -6.61 2.81 -519.46 -1.46 -8.07 16 4 C 0.17 2.80 12.77 179.88 2.30 5.10 16 5 N -0.35 -9.92 12.19 -59.54 -0.73 -10.64 16 6 N -0.33 -10.29 11.76 -51.11 -0.60 -10.89 16 7 C 0.21 4.97 6.64 136.36 0.91 5.87 16 8 C -0.06 -1.31 5.68 -19.99 -0.11 -1.43 16 9 C -0.07 -1.04 8.79 22.50 0.20 -0.85 16 10 C -0.12 -1.47 10.03 22.25 0.22 -1.24 16 11 C -0.08 -1.42 10.03 22.30 0.22 -1.20 16 12 C -0.14 -3.76 8.69 22.36 0.19 -3.56 16 13 C 0.17 4.57 6.32 38.47 0.24 4.81 16 14 N -0.65 -20.46 4.83 -302.87 -1.46 -21.92 16 15 C 0.54 21.04 7.69 87.66 0.67 21.72 16 16 O -0.53 -23.23 13.28 -3.05 -0.04 -23.27 16 17 C -0.11 -4.74 6.16 71.24 0.44 -4.30 16 18 S -0.16 -8.23 18.55 -56.49 -1.05 -9.28 16 19 C -0.53 -32.49 10.04 67.95 0.68 -31.81 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 21 C 0.05 2.77 5.50 84.86 0.47 3.23 16 22 N -0.92 -57.44 13.97 21.65 0.30 -57.14 16 23 Si 0.92 46.01 27.74 68.60 1.90 47.92 16 24 H -0.26 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.23 -11.58 6.74 99.48 0.67 -10.90 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.04 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.14 -0.36 8.13 -2.39 -0.02 -0.38 16 31 H 0.11 0.19 6.00 -2.39 -0.01 0.18 16 32 H 0.27 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.15 1.18 6.88 -2.91 -0.02 1.16 16 34 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 35 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.12 3.88 6.19 -2.91 -0.02 3.86 16 37 H 0.41 11.89 7.98 -92.71 -0.74 11.15 16 38 H 0.10 4.42 8.14 -2.40 -0.02 4.40 16 39 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 40 H 0.28 16.03 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -86.89 357.65 4.92 -81.97 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.31 Total: 14.21 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 7.74 Total: -2.88 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.94 Total: -108.66 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.04 Total: -23.27 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.92 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.05 Total: -9.28 kcal Total: -86.89 4.92 -81.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354593084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.008 kcal (2) G-P(sol) polarization free energy of solvation -86.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds