Wall clock time and date at job start Tue Mar 31 2020 16:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 119.99721 * 2 1 4 4 O 1.21555 * 120.00218 * 359.97438 * 3 2 1 5 5 C 1.47846 * 120.00150 * 179.97438 * 3 2 1 6 6 C 1.39598 * 120.14254 * 359.97438 * 5 3 2 7 7 C 1.37939 * 119.85387 * 180.02562 * 6 5 3 8 8 C 1.38381 * 120.14054 * 359.72008 * 7 6 5 9 9 C 1.38342 * 120.29474 * 0.55384 * 8 7 6 10 10 C 1.50703 * 119.92480 * 179.72338 * 9 8 7 11 11 S 1.81001 * 109.47000 * 269.72530 * 10 9 8 12 12 C 1.76200 * 99.99813 * 180.02562 * 11 10 9 13 13 N 1.32394 * 126.25874 * 359.97384 * 12 11 10 14 14 N 1.28516 * 110.20034 * 180.02562 * 13 12 11 15 15 C 1.33095 * 109.75073 * 0.02562 * 14 13 12 16 16 C 1.39771 * 126.56547 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00111 * 188.22178 * 16 15 14 18 18 C 1.40084 * 120.00218 * 8.21795 * 16 15 14 19 19 N 1.30817 * 119.99946 * 191.23483 * 18 16 15 20 20 Si 1.86798 * 119.99751 * 11.23165 * 18 16 15 21 21 H 1.48506 * 109.46877 * 270.00124 * 20 18 16 22 22 H 1.48499 * 109.47207 * 29.99996 * 20 18 16 23 23 H 1.48496 * 109.47289 * 150.00071 * 20 18 16 24 24 N 1.36672 * 126.26147 * 180.30773 * 12 11 10 25 25 C 1.46501 * 127.14877 * 359.97438 * 24 12 11 26 26 C 1.37970 * 120.14345 * 359.44687 * 9 8 7 27 27 H 1.08997 * 109.46945 * 60.01028 * 1 2 3 28 28 H 1.09008 * 109.46649 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47589 * 300.00218 * 1 2 3 30 30 H 0.96997 * 120.00306 * 179.97438 * 2 1 3 31 31 H 1.08002 * 120.07046 * 359.97438 * 6 5 3 32 32 H 1.07992 * 119.92504 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.85133 * 180.30044 * 8 7 6 34 34 H 1.09004 * 109.46463 * 149.72567 * 10 9 8 35 35 H 1.08994 * 109.47587 * 29.72930 * 10 9 8 36 36 H 0.96998 * 119.99838 * 354.77302 * 19 18 16 37 37 H 1.09004 * 109.46941 * 270.14226 * 25 24 12 38 38 H 1.09008 * 109.47284 * 30.13706 * 25 24 12 39 39 H 1.08993 * 109.47266 * 150.14108 * 25 24 12 40 40 H 1.07998 * 120.07449 * 180.24729 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2199 -0.0005 5 6 3.6173 1.1673 0.0006 6 6 4.3184 -0.0398 0.0017 7 6 5.6977 -0.0328 0.0027 8 6 6.3864 1.1675 -0.0031 9 6 5.6978 2.3673 0.0015 10 6 6.4563 3.6695 0.0013 11 16 6.7586 4.1917 1.7078 12 6 7.6329 5.6938 1.4177 13 7 7.9342 6.2087 0.2358 14 7 8.5765 7.3120 0.3831 15 6 8.7284 7.5744 1.6790 16 6 9.3741 8.6829 2.2341 17 1 9.5535 8.7265 3.2982 18 6 9.7885 9.7373 1.4101 19 7 10.5800 10.6650 1.8835 20 14 9.2111 9.8183 -0.3645 21 1 10.1729 9.0914 -1.2316 22 1 7.8701 9.1905 -0.4779 23 1 9.1313 11.2373 -0.7948 24 7 8.1297 6.5371 2.3716 25 6 8.0436 6.3773 3.8253 26 6 4.3181 2.3742 0.0004 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 3.7819 -0.9772 0.0025 32 1 6.2412 -0.9659 0.0031 33 1 7.4665 1.1675 -0.0072 34 1 5.8704 4.4311 -0.5134 35 1 7.4085 3.5354 -0.5117 36 1 10.8189 10.6654 2.8236 37 1 7.1333 6.8535 4.1898 38 1 8.0230 5.3161 4.0736 39 1 8.9101 6.8435 4.2940 40 1 3.7816 3.3115 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357100832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:58 Heat of formation + Delta-G solvation = 46.060162 kcal Electronic energy + Delta-G solvation = -24290.564631 eV Core-core repulsion = 20618.058132 eV Total energy + Delta-G solvation = -3672.506498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92014 -40.46931 -38.71089 -35.04626 -33.94118 -33.61016 -33.09015 -31.46069 -30.02316 -27.83360 -26.95108 -26.62267 -25.24453 -23.63111 -22.17194 -21.41375 -20.62518 -20.13091 -18.27426 -18.18064 -16.63656 -16.55694 -16.27740 -15.56087 -15.35966 -15.22646 -14.99395 -14.88681 -14.40782 -13.96714 -13.80228 -13.46356 -13.39266 -13.11519 -12.88707 -12.78792 -12.66586 -12.52379 -12.36969 -11.98438 -11.84260 -11.36635 -11.12263 -10.90045 -10.51091 -10.26676 -9.95335 -9.62563 -9.56374 -9.38668 -9.20122 -9.05333 -8.96954 -8.66157 -8.39765 -7.43850 -7.09177 -4.82801 0.53308 0.93471 1.92773 2.52099 2.72187 2.82548 2.90616 3.52963 3.60230 3.64854 3.90263 4.02554 4.10524 4.31677 4.36952 4.38517 4.56882 4.76392 4.81295 5.02703 5.08604 5.10099 5.12749 5.30430 5.37775 5.42415 5.50202 5.70055 5.72927 5.87509 5.90898 5.95664 6.01613 6.05720 6.28970 6.38535 6.57689 6.65686 7.08507 7.13000 7.40050 7.53656 7.87865 8.04746 8.35739 8.56042 9.95725 10.11691 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.002407 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.034247 B =11630.870622 C =11856.248524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.559 3.441 4 O -0.531 6.531 5 C -0.140 4.140 6 C -0.086 4.086 7 C -0.127 4.127 8 C -0.073 4.073 9 C -0.075 4.075 10 C -0.057 4.057 11 S -0.035 6.035 12 C 0.062 3.938 13 N -0.271 5.271 14 N -0.410 5.410 15 C 0.344 3.656 16 C -0.493 4.493 17 H 0.083 0.917 18 C 0.066 3.934 19 N -0.807 5.807 20 Si 1.105 2.895 21 H -0.277 1.277 22 H -0.255 1.255 23 H -0.310 1.310 24 N -0.512 5.512 25 C 0.102 3.898 26 C -0.039 4.039 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.401 0.599 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.284 0.716 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 -23.967 -0.285 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.346 3.654 4 O -0.408 6.408 5 C -0.143 4.143 6 C -0.106 4.106 7 C -0.145 4.145 8 C -0.093 4.093 9 C -0.077 4.077 10 C -0.206 4.206 11 S 0.194 5.806 12 C -0.311 4.311 13 N -0.115 5.115 14 N -0.260 5.260 15 C 0.100 3.900 16 C -0.534 4.534 17 H 0.101 0.899 18 C -0.157 4.157 19 N -0.431 5.431 20 Si 0.932 3.068 21 H -0.203 1.203 22 H -0.180 1.180 23 H -0.240 1.240 24 N -0.213 5.213 25 C -0.043 4.043 26 C -0.060 4.060 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.236 0.764 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.526 -22.677 -2.066 26.486 hybrid contribution 0.569 -0.795 2.151 2.363 sum -12.957 -23.473 0.085 26.812 Atomic orbital electron populations 1.21559 0.79170 1.02276 1.02626 1.45697 1.07904 1.08597 1.76492 1.18337 0.87321 0.83711 0.76001 1.90806 1.69907 1.31108 1.48973 1.19814 0.92454 0.94441 1.07583 1.21248 0.94704 0.96573 0.98043 1.21064 0.93834 0.98278 1.01295 1.21367 1.00753 0.91521 0.95679 1.19366 0.93174 0.93950 1.01196 1.22277 1.04224 0.96722 0.97349 1.84773 1.69049 1.17482 1.09291 1.25454 1.14574 1.01913 0.89203 1.74261 1.12768 1.05313 1.19166 1.74212 1.27653 1.11440 1.12655 1.21673 0.92159 0.88779 0.87346 1.19358 1.36090 1.00776 0.97207 0.89934 1.27312 0.89925 0.90187 1.08289 1.70658 1.22217 1.32599 1.17609 0.82905 0.80202 0.72628 0.71031 1.20302 1.18021 1.24027 1.45857 1.48589 1.20812 1.06024 1.21536 1.02669 1.01746 0.78324 1.21226 0.93057 0.98133 0.93582 0.92031 0.90562 0.92008 0.76434 0.85773 0.85085 0.84905 0.87752 0.87761 0.90514 0.92107 0.91233 0.90290 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 10.70 59.85 0.64 1.16 16 2 N -0.73 -5.33 5.66 -68.04 -0.39 -5.72 16 3 C 0.56 6.34 7.77 -12.33 -0.10 6.25 16 4 O -0.53 -8.22 16.35 5.32 0.09 -8.13 16 5 C -0.14 -1.48 5.87 -104.97 -0.62 -2.10 16 6 C -0.09 -0.65 9.54 -39.18 -0.37 -1.03 16 7 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 8 C -0.07 -0.71 9.69 -39.49 -0.38 -1.10 16 9 C -0.08 -0.90 5.13 -104.68 -0.54 -1.44 16 10 C -0.06 -0.84 5.35 36.01 0.19 -0.65 16 11 S -0.04 -0.60 21.77 -107.50 -2.34 -2.94 16 12 C 0.06 1.41 8.09 -87.27 -0.71 0.70 16 13 N -0.27 -6.95 11.62 30.89 0.36 -6.59 16 14 N -0.41 -11.41 7.50 31.26 0.23 -11.18 16 15 C 0.34 9.22 7.21 -154.82 -1.12 8.10 16 16 C -0.49 -13.30 9.47 -38.32 -0.36 -13.67 16 17 H 0.08 2.16 7.46 -52.48 -0.39 1.77 16 18 C 0.07 1.78 5.52 -17.29 -0.10 1.69 16 19 N -0.81 -21.77 13.65 55.56 0.76 -21.01 16 20 Si 1.10 27.84 26.40 -169.99 -4.49 23.35 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.26 -6.71 6.25 56.52 0.35 -6.36 16 23 H -0.31 -7.49 7.11 56.52 0.40 -7.09 16 24 N -0.51 -11.95 3.26 -123.18 -0.40 -12.35 16 25 C 0.10 1.83 10.89 59.85 0.65 2.48 16 26 C -0.04 -0.49 9.24 -39.19 -0.36 -0.85 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.40 1.63 6.86 -40.82 -0.28 1.35 16 31 H 0.12 0.50 6.41 -52.49 -0.34 0.16 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.10 1.63 8.08 -51.91 -0.42 1.21 16 35 H 0.10 1.54 8.08 -51.92 -0.42 1.12 16 36 H 0.28 7.27 8.73 -40.82 -0.36 6.91 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.08 7.85 -51.92 -0.41 0.67 16 39 H 0.08 1.37 7.47 -51.93 -0.39 0.98 16 40 H 0.14 1.90 7.65 -52.49 -0.40 1.50 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -34.94 358.46 -9.12 -44.06 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.78 Total: -3.09 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -3.56 Total: -1.80 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.57 Total: -56.84 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 27.84 SS G_CDS: -4.49 Total: 23.35 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.34 Total: -2.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.94 -9.12 -44.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357100832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.120 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds