Wall clock time and date at job start Tue Mar 31 2020 16:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 119.99721 * 2 1 4 4 O 1.21555 * 120.00218 * 359.97438 * 3 2 1 5 5 C 1.47846 * 120.00150 * 179.97438 * 3 2 1 6 6 C 1.39598 * 120.14254 * 359.97438 * 5 3 2 7 7 C 1.37939 * 119.85387 * 180.02562 * 6 5 3 8 8 C 1.38381 * 120.14054 * 359.72008 * 7 6 5 9 9 C 1.38342 * 120.29474 * 0.55384 * 8 7 6 10 10 C 1.50703 * 119.92480 * 179.72338 * 9 8 7 11 11 S 1.81001 * 109.47000 * 269.72530 * 10 9 8 12 12 C 1.76200 * 99.99813 * 180.02562 * 11 10 9 13 13 N 1.32394 * 126.25874 * 359.97384 * 12 11 10 14 14 N 1.28516 * 110.20034 * 180.02562 * 13 12 11 15 15 C 1.33095 * 109.75073 * 0.02562 * 14 13 12 16 16 C 1.39771 * 126.56547 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00111 * 188.22178 * 16 15 14 18 18 C 1.40084 * 120.00218 * 8.21795 * 16 15 14 19 19 N 1.30817 * 119.99946 * 191.23483 * 18 16 15 20 20 Si 1.86798 * 119.99751 * 11.23165 * 18 16 15 21 21 H 1.48506 * 109.46877 * 270.00124 * 20 18 16 22 22 H 1.48499 * 109.47207 * 29.99996 * 20 18 16 23 23 H 1.48496 * 109.47289 * 150.00071 * 20 18 16 24 24 N 1.36672 * 126.26147 * 180.30773 * 12 11 10 25 25 C 1.46501 * 127.14877 * 359.97438 * 24 12 11 26 26 C 1.37970 * 120.14345 * 359.44687 * 9 8 7 27 27 H 1.08997 * 109.46945 * 60.01028 * 1 2 3 28 28 H 1.09008 * 109.46649 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47589 * 300.00218 * 1 2 3 30 30 H 0.96997 * 120.00306 * 179.97438 * 2 1 3 31 31 H 1.08002 * 120.07046 * 359.97438 * 6 5 3 32 32 H 1.07992 * 119.92504 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.85133 * 180.30044 * 8 7 6 34 34 H 1.09004 * 109.46463 * 149.72567 * 10 9 8 35 35 H 1.08994 * 109.47587 * 29.72930 * 10 9 8 36 36 H 0.96998 * 119.99838 * 354.77302 * 19 18 16 37 37 H 1.09004 * 109.46941 * 270.14226 * 25 24 12 38 38 H 1.09008 * 109.47284 * 30.13706 * 25 24 12 39 39 H 1.08993 * 109.47266 * 150.14108 * 25 24 12 40 40 H 1.07998 * 120.07449 * 180.24729 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2199 -0.0005 5 6 3.6173 1.1673 0.0006 6 6 4.3184 -0.0398 0.0017 7 6 5.6977 -0.0328 0.0027 8 6 6.3864 1.1675 -0.0031 9 6 5.6978 2.3673 0.0015 10 6 6.4563 3.6695 0.0013 11 16 6.7586 4.1917 1.7078 12 6 7.6329 5.6938 1.4177 13 7 7.9342 6.2087 0.2358 14 7 8.5765 7.3120 0.3831 15 6 8.7284 7.5744 1.6790 16 6 9.3741 8.6829 2.2341 17 1 9.5535 8.7265 3.2982 18 6 9.7885 9.7373 1.4101 19 7 10.5800 10.6650 1.8835 20 14 9.2111 9.8183 -0.3645 21 1 10.1729 9.0914 -1.2316 22 1 7.8701 9.1905 -0.4779 23 1 9.1313 11.2373 -0.7948 24 7 8.1297 6.5371 2.3716 25 6 8.0436 6.3773 3.8253 26 6 4.3181 2.3742 0.0004 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 3.7819 -0.9772 0.0025 32 1 6.2412 -0.9659 0.0031 33 1 7.4665 1.1675 -0.0072 34 1 5.8704 4.4311 -0.5134 35 1 7.4085 3.5354 -0.5117 36 1 10.8189 10.6654 2.8236 37 1 7.1333 6.8535 4.1898 38 1 8.0230 5.3161 4.0736 39 1 8.9101 6.8435 4.2940 40 1 3.7816 3.3115 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357100832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:57 Heat of formation + Delta-G solvation = 23.388897 kcal Electronic energy + Delta-G solvation = -24291.547731 eV Core-core repulsion = 20618.058132 eV Total energy + Delta-G solvation = -3673.489598 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.83948 -41.27744 -39.53137 -35.93723 -35.82081 -35.41571 -33.99349 -32.21994 -31.98690 -28.82162 -28.33185 -27.64825 -27.05834 -24.38620 -23.35529 -22.94628 -22.12552 -21.30688 -20.19058 -19.10922 -18.16683 -17.35842 -17.08761 -17.02270 -16.84025 -16.34203 -16.05109 -15.98701 -15.78333 -15.57190 -15.08879 -14.74075 -14.68741 -14.24378 -14.11409 -14.02479 -13.89132 -13.61188 -13.30415 -13.11527 -13.07623 -12.86491 -12.68186 -12.17116 -12.02453 -11.85676 -11.57737 -11.39232 -11.16256 -10.88504 -10.55765 -10.37433 -10.30738 -9.93152 -9.81082 -9.49655 -8.70779 -6.84834 -0.28481 -0.00615 0.59714 0.98224 1.18432 1.49884 1.61180 1.82522 1.94732 2.08312 2.16867 2.21080 2.39248 2.85716 3.03677 3.46126 3.64233 3.80563 3.92149 4.05852 4.12753 4.26284 4.31488 4.42705 4.47247 4.54562 4.55101 4.61164 4.61431 4.69186 4.80890 4.95151 4.96424 5.23233 5.24245 5.33275 5.36781 5.37095 5.47063 5.68995 5.84350 6.00359 6.39444 6.47749 6.57421 7.15391 7.91751 8.15716 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.002407 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.034247 B =11630.870622 C =11856.248524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.714 5.714 3 C 0.552 3.448 4 O -0.586 6.586 5 C -0.152 4.152 6 C -0.065 4.065 7 C -0.115 4.115 8 C -0.073 4.073 9 C -0.091 4.091 10 C -0.052 4.052 11 S 0.006 5.994 12 C 0.077 3.923 13 N -0.312 5.312 14 N -0.441 5.441 15 C 0.323 3.677 16 C -0.509 4.509 17 H 0.083 0.917 18 C 0.043 3.957 19 N -0.822 5.822 20 Si 1.137 2.863 21 H -0.285 1.285 22 H -0.277 1.277 23 H -0.295 1.295 24 N -0.515 5.515 25 C 0.093 3.907 26 C -0.059 4.059 27 H 0.049 0.951 28 H 0.118 0.882 29 H 0.049 0.951 30 H 0.420 0.580 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.286 0.714 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -28.556 0.302 31.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C 0.340 3.660 4 O -0.468 6.468 5 C -0.155 4.155 6 C -0.084 4.084 7 C -0.133 4.133 8 C -0.093 4.093 9 C -0.093 4.093 10 C -0.200 4.200 11 S 0.236 5.764 12 C -0.298 4.298 13 N -0.154 5.154 14 N -0.289 5.289 15 C 0.076 3.924 16 C -0.550 4.550 17 H 0.101 0.899 18 C -0.177 4.177 19 N -0.447 5.447 20 Si 0.965 3.035 21 H -0.212 1.212 22 H -0.204 1.204 23 H -0.224 1.224 24 N -0.215 5.215 25 C -0.049 4.049 26 C -0.081 4.081 27 H 0.068 0.932 28 H 0.137 0.863 29 H 0.068 0.932 30 H 0.258 0.742 31 H 0.186 0.814 32 H 0.189 0.811 33 H 0.164 0.836 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.296 -27.303 -1.460 30.854 hybrid contribution 0.617 0.264 1.995 2.105 sum -13.679 -27.039 0.535 30.307 Atomic orbital electron populations 1.21732 0.78245 1.04662 1.01490 1.45598 1.08564 1.08176 1.74331 1.18600 0.87798 0.84034 0.75564 1.90780 1.70904 1.33228 1.51854 1.19866 0.92193 0.95006 1.08450 1.21719 0.94977 0.96870 0.94853 1.21517 0.93897 0.98840 0.99049 1.21625 1.01594 0.91350 0.94766 1.19125 0.92757 0.93438 1.03975 1.22300 1.04303 0.97933 0.95502 1.84659 1.67039 1.13416 1.11318 1.26586 1.11809 1.02925 0.88469 1.74194 1.14853 1.05645 1.20730 1.74085 1.28507 1.12633 1.13683 1.21764 0.93108 0.89851 0.87700 1.19351 1.37254 1.01222 0.97220 0.89902 1.27738 0.90082 0.90392 1.09511 1.70651 1.23077 1.33077 1.17943 0.82413 0.78478 0.72853 0.69758 1.21177 1.20367 1.22383 1.46226 1.47349 1.19805 1.08111 1.21897 1.03738 1.04006 0.75293 1.21099 0.93358 0.98219 0.95388 0.93215 0.86339 0.93231 0.74198 0.81355 0.81067 0.83603 0.89619 0.87843 0.90249 0.90513 0.88314 0.89766 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.70 127.77 1.37 2.18 16 2 N -0.71 -8.42 5.66 -487.47 -2.76 -11.18 16 3 C 0.55 12.00 7.77 86.79 0.67 12.68 16 4 O -0.59 -18.79 16.35 -3.89 -0.06 -18.86 16 5 C -0.15 -2.95 5.87 -20.09 -0.12 -3.06 16 6 C -0.06 -0.68 9.54 22.53 0.21 -0.47 16 7 C -0.12 -1.18 10.03 22.23 0.22 -0.95 16 8 C -0.07 -1.20 9.69 22.33 0.22 -0.98 16 9 C -0.09 -2.09 5.13 -19.90 -0.10 -2.20 16 10 C -0.05 -1.53 5.35 71.24 0.38 -1.15 16 11 S 0.01 0.21 21.77 -56.49 -1.23 -1.02 16 12 C 0.08 3.48 8.09 179.18 1.45 4.93 16 13 N -0.31 -16.30 11.62 -56.17 -0.65 -16.95 16 14 N -0.44 -25.18 7.50 -55.02 -0.41 -25.60 16 15 C 0.32 17.62 7.21 133.23 0.96 18.58 16 16 C -0.51 -28.00 9.47 23.09 0.22 -27.78 16 17 H 0.08 4.41 7.46 -2.91 -0.02 4.39 16 18 C 0.04 2.38 5.52 85.29 0.47 2.85 16 19 N -0.82 -44.89 13.65 21.86 0.30 -44.59 16 20 Si 1.14 58.31 26.40 68.60 1.81 60.12 16 21 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 22 H -0.28 -15.11 6.25 99.48 0.62 -14.49 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 24 N -0.52 -23.91 3.26 -543.62 -1.77 -25.68 16 25 C 0.09 3.19 10.89 127.77 1.39 4.58 16 26 C -0.06 -1.48 9.24 22.52 0.21 -1.27 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.42 1.48 6.86 -92.71 -0.64 0.84 16 31 H 0.17 0.23 6.41 -2.91 -0.02 0.21 16 32 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.09 2.82 8.08 -2.39 -0.02 2.80 16 35 H 0.10 3.04 8.08 -2.40 -0.02 3.02 16 36 H 0.29 14.88 8.73 -92.71 -0.81 14.07 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.10 2.80 7.85 -2.38 -0.02 2.78 16 39 H 0.08 2.82 7.47 -2.39 -0.02 2.80 16 40 H 0.11 3.34 7.65 -2.91 -0.02 3.32 16 Total: -1.00 -80.45 358.46 3.10 -77.35 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: 0.33 Total: -1.54 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 7.56 Total: 7.94 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -5.30 Total: -124.00 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.06 Total: -18.86 kcal Atomic # 14 Polarization: 58.31 SS G_CDS: 1.81 Total: 60.12 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.23 Total: -1.02 kcal Total: -80.45 3.10 -77.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357100832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.738 kcal (2) G-P(sol) polarization free energy of solvation -80.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds