Wall clock time and date at job start Tue Mar 31 2020 16:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99646 * 2 1 4 4 N 1.46504 * 109.47140 * 125.00759 * 3 2 1 5 5 C 1.46502 * 119.99656 * 263.11255 * 4 3 2 6 6 C 1.50708 * 109.46697 * 269.99273 * 5 4 3 7 7 H 1.08000 * 119.99540 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99980 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00133 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99874 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47254 * 90.00112 * 10 8 6 12 12 H 1.48507 * 109.47091 * 209.99935 * 10 8 6 13 13 H 1.48498 * 109.47204 * 329.99715 * 10 8 6 14 14 C 1.34776 * 120.00319 * 83.10306 * 4 3 2 15 15 O 1.21629 * 120.00275 * 183.35987 * 14 4 3 16 16 C 1.47264 * 119.99618 * 3.35747 * 14 4 3 17 17 C 1.35071 * 122.43015 * 173.40080 * 16 14 4 18 18 S 1.71000 * 109.14307 * 179.97438 * 17 16 14 19 19 C 1.75996 * 90.59415 * 0.02562 * 18 17 16 20 20 C 1.47931 * 125.31703 * 179.97438 * 19 18 17 21 21 C 1.41041 * 126.26246 * 179.97438 * 20 19 18 22 22 N 1.30612 * 108.06342 * 180.02562 * 21 20 19 23 23 N 1.39999 * 108.59277 * 0.02562 * 22 21 20 24 24 C 1.46496 * 125.85689 * 179.73788 * 23 22 21 25 25 C 1.34713 * 108.28529 * 359.97438 * 23 22 21 26 26 N 1.29849 * 109.35902 * 0.22627 * 19 18 17 27 27 H 1.08003 * 120.00043 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00157 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00382 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47488 * 5.00406 * 3 2 1 31 31 H 1.08998 * 109.47177 * 245.00132 * 3 2 1 32 32 H 1.08998 * 109.47486 * 29.98933 * 5 4 3 33 33 H 1.09001 * 109.47105 * 149.99770 * 5 4 3 34 34 H 0.97006 * 120.00508 * 180.02562 * 9 8 6 35 35 H 1.08009 * 125.42893 * 359.96736 * 17 16 14 36 36 H 1.07996 * 125.96473 * 0.06465 * 21 20 19 37 37 H 1.08999 * 109.47358 * 90.02130 * 24 23 22 38 38 H 1.09007 * 109.47252 * 210.02249 * 24 23 22 39 39 H 1.09001 * 109.47212 * 330.02568 * 24 23 22 40 40 H 1.07990 * 126.20724 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9939 1.3319 1.1313 5 6 2.6120 1.9999 2.3780 6 6 3.0334 3.4458 2.3226 7 1 3.5350 3.8288 1.4462 8 6 2.7785 4.2796 3.3907 9 7 2.1672 3.8133 4.4576 10 14 3.3002 6.0719 3.3217 11 1 2.2007 6.8856 2.7436 12 1 3.6030 6.5525 4.6938 13 1 4.5117 6.2025 2.4729 14 6 4.2010 0.7419 1.0253 15 8 4.9490 0.7108 1.9839 16 6 4.6141 0.1349 -0.2512 17 6 5.8576 -0.3526 -0.4525 18 16 5.9658 -0.9741 -2.0419 19 6 4.2908 -0.5298 -2.3492 20 6 3.5653 -0.7554 -3.6185 21 6 2.2247 -0.4084 -3.8862 22 7 1.9501 -0.7682 -5.1114 23 7 3.0917 -1.3543 -5.6710 24 6 3.2008 -1.8963 -7.0276 25 6 4.0711 -1.3391 -4.7461 26 7 3.7930 0.0317 -1.2895 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.5311 1.9412 2.5055 33 1 3.1041 1.5100 3.2182 34 1 1.9875 4.4000 5.2090 35 1 6.6564 -0.3500 0.2745 36 1 1.5443 0.0716 -3.1984 37 1 3.5323 -1.1111 -7.7070 38 1 3.9231 -2.7127 -7.0357 39 1 2.2282 -2.2685 -7.3495 40 1 5.0738 -1.7198 -4.8726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359384329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:51 Heat of formation + Delta-G solvation = 131.611393 kcal Electronic energy + Delta-G solvation = -25488.452848 eV Core-core repulsion = 21819.656129 eV Total energy + Delta-G solvation = -3668.796719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52909 -40.14267 -37.89574 -35.57629 -33.82720 -33.09053 -31.93849 -31.71492 -29.60002 -27.90194 -27.21863 -25.50241 -25.05467 -23.28709 -21.73004 -21.47059 -20.08485 -19.62520 -18.70701 -17.72109 -17.27056 -16.41832 -16.08481 -15.90780 -15.32741 -14.93980 -14.91340 -14.52549 -14.29326 -14.01965 -13.75861 -13.61949 -13.12765 -13.03430 -12.93751 -12.73297 -12.66397 -12.12842 -11.79029 -11.54517 -11.21523 -11.07201 -10.91351 -10.75039 -10.53197 -10.14427 -10.04485 -9.82870 -9.71287 -9.48095 -9.31863 -9.10463 -8.73251 -8.37961 -8.11866 -7.56372 -5.99064 -4.03788 0.43314 1.21491 1.49634 1.64027 2.09157 2.10715 2.72763 2.91681 3.34249 3.40269 3.45160 3.77127 3.98136 4.16533 4.34799 4.40779 4.50933 4.69368 4.86319 4.96683 4.98586 5.27056 5.31454 5.36297 5.45799 5.49053 5.54139 5.70483 5.96488 6.11660 6.24540 6.37127 6.48382 6.63991 7.06924 7.10644 7.23496 7.29551 7.50382 7.56907 7.68161 7.97916 8.28286 8.46002 8.92275 9.09533 9.60880 11.08942 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.003294 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.559832 B = 8498.777027 C = 9170.132982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C 0.129 3.871 4 N -0.572 5.572 5 C 0.245 3.755 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.576 3.424 15 O -0.538 6.538 16 C 0.033 3.967 17 C -0.221 4.221 18 S 0.129 5.871 19 C 0.137 3.863 20 C -0.172 4.172 21 C 0.102 3.898 22 N -0.294 5.294 23 N -0.369 5.369 24 C 0.100 3.900 25 C 0.085 3.915 26 N -0.428 5.428 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.188 0.812 36 H 0.196 0.804 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -14.104 -23.710 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.152 4.152 3 C 0.005 3.995 4 N -0.300 5.300 5 C 0.126 3.874 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.359 3.641 15 O -0.416 6.416 16 C -0.101 4.101 17 C -0.363 4.363 18 S 0.386 5.614 19 C -0.140 4.140 20 C -0.188 4.188 21 C -0.088 4.088 22 N -0.114 5.114 23 N -0.149 5.149 24 C -0.041 4.041 25 C -0.067 4.067 26 N -0.144 5.144 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.205 0.795 36 H 0.213 0.787 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.370 -14.416 -24.593 28.705 hybrid contribution 0.689 1.372 1.547 2.179 sum 4.059 -13.044 -23.046 26.791 Atomic orbital electron populations 1.23719 0.95855 1.01272 1.03409 1.23267 0.95583 0.99113 0.97238 1.21040 0.92769 0.94469 0.91219 1.48066 1.13547 1.51991 1.16414 1.19369 0.96084 0.91747 0.80159 1.21439 1.38443 0.94345 1.02218 0.92399 1.24923 0.95132 0.98892 0.95105 1.69939 1.41669 1.35919 1.05794 0.86498 0.78943 0.84681 0.77317 1.20623 1.21114 1.19902 1.17119 0.82667 0.79198 0.85127 1.90779 1.52774 1.60129 1.37875 1.20609 0.90325 1.03786 0.95418 1.26312 1.02543 1.05886 1.01510 1.83472 1.13828 1.56981 1.07077 1.25103 0.92882 1.00473 0.95528 1.17721 0.95235 1.14128 0.91724 1.24140 0.94668 0.97021 0.92971 1.77378 1.06346 1.17283 1.10384 1.48392 1.08373 1.45963 1.12127 1.21947 1.04735 0.99262 0.78190 1.22470 0.95324 0.99980 0.88953 1.67519 1.32745 1.15375 0.98719 0.88614 0.89263 0.88306 0.90469 0.87269 0.94652 0.93713 0.92742 0.79504 0.78701 0.90313 0.89198 0.88889 0.80269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 14.32 29.01 0.42 -2.58 16 2 C -0.13 -2.18 8.79 -36.03 -0.32 -2.49 16 3 C 0.13 2.40 5.45 -5.19 -0.03 2.37 16 4 N -0.57 -13.12 2.46 -177.76 -0.44 -13.56 16 5 C 0.25 6.69 5.16 -5.19 -0.03 6.66 16 6 C -0.53 -15.31 9.39 -34.44 -0.32 -15.64 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 10 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.58 13.07 7.58 -12.59 -0.10 12.97 16 15 O -0.54 -14.06 16.22 5.25 0.09 -13.98 16 16 C 0.03 0.59 6.44 -84.92 -0.55 0.05 16 17 C -0.22 -3.28 10.56 29.61 0.31 -2.96 16 18 S 0.13 1.36 22.96 -107.50 -2.47 -1.11 16 19 C 0.14 1.72 7.46 -14.42 -0.11 1.61 16 20 C -0.17 -1.85 6.09 -105.43 -0.64 -2.49 16 21 C 0.10 1.15 11.98 -17.01 -0.20 0.94 16 22 N -0.29 -3.26 12.53 30.83 0.39 -2.88 16 23 N -0.37 -2.98 4.00 -67.86 -0.27 -3.25 16 24 C 0.10 0.35 11.45 59.84 0.69 1.03 16 25 C 0.08 0.66 11.25 -16.85 -0.19 0.47 16 26 N -0.43 -6.61 5.47 -8.10 -0.04 -6.66 16 27 H 0.10 1.37 7.84 -52.48 -0.41 0.96 16 28 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.10 1.66 7.65 -52.49 -0.40 1.26 16 30 H 0.08 1.47 7.67 -51.93 -0.40 1.07 16 31 H 0.11 1.92 5.27 -51.93 -0.27 1.65 16 32 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.04 1.36 7.38 -51.93 -0.38 0.98 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.19 2.67 8.00 -52.48 -0.42 2.25 16 36 H 0.20 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -35.97 365.75 -7.47 -43.44 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.79 Total: -0.11 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.16 Total: 1.64 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.37 Total: -52.67 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.47 Total: -1.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.97 -7.47 -43.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359384329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.056 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds