Wall clock time and date at job start Tue Mar 31 2020 16:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99646 * 2 1 4 4 N 1.46504 * 109.47140 * 125.00759 * 3 2 1 5 5 C 1.46502 * 119.99656 * 263.11255 * 4 3 2 6 6 C 1.50708 * 109.46697 * 269.99273 * 5 4 3 7 7 H 1.08000 * 119.99540 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99980 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00133 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99874 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47254 * 90.00112 * 10 8 6 12 12 H 1.48507 * 109.47091 * 209.99935 * 10 8 6 13 13 H 1.48498 * 109.47204 * 329.99715 * 10 8 6 14 14 C 1.34776 * 120.00319 * 83.10306 * 4 3 2 15 15 O 1.21629 * 120.00275 * 183.35987 * 14 4 3 16 16 C 1.47264 * 119.99618 * 3.35747 * 14 4 3 17 17 C 1.35071 * 122.43015 * 173.40080 * 16 14 4 18 18 S 1.71000 * 109.14307 * 179.97438 * 17 16 14 19 19 C 1.75996 * 90.59415 * 0.02562 * 18 17 16 20 20 C 1.47931 * 125.31703 * 179.97438 * 19 18 17 21 21 C 1.41041 * 126.26246 * 179.97438 * 20 19 18 22 22 N 1.30612 * 108.06342 * 180.02562 * 21 20 19 23 23 N 1.39999 * 108.59277 * 0.02562 * 22 21 20 24 24 C 1.46496 * 125.85689 * 179.73788 * 23 22 21 25 25 C 1.34713 * 108.28529 * 359.97438 * 23 22 21 26 26 N 1.29849 * 109.35902 * 0.22627 * 19 18 17 27 27 H 1.08003 * 120.00043 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00157 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00382 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47488 * 5.00406 * 3 2 1 31 31 H 1.08998 * 109.47177 * 245.00132 * 3 2 1 32 32 H 1.08998 * 109.47486 * 29.98933 * 5 4 3 33 33 H 1.09001 * 109.47105 * 149.99770 * 5 4 3 34 34 H 0.97006 * 120.00508 * 180.02562 * 9 8 6 35 35 H 1.08009 * 125.42893 * 359.96736 * 17 16 14 36 36 H 1.07996 * 125.96473 * 0.06465 * 21 20 19 37 37 H 1.08999 * 109.47358 * 90.02130 * 24 23 22 38 38 H 1.09007 * 109.47252 * 210.02249 * 24 23 22 39 39 H 1.09001 * 109.47212 * 330.02568 * 24 23 22 40 40 H 1.07990 * 126.20724 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9939 1.3319 1.1313 5 6 2.6120 1.9999 2.3780 6 6 3.0334 3.4458 2.3226 7 1 3.5350 3.8288 1.4462 8 6 2.7785 4.2796 3.3907 9 7 2.1672 3.8133 4.4576 10 14 3.3002 6.0719 3.3217 11 1 2.2007 6.8856 2.7436 12 1 3.6030 6.5525 4.6938 13 1 4.5117 6.2025 2.4729 14 6 4.2010 0.7419 1.0253 15 8 4.9490 0.7108 1.9839 16 6 4.6141 0.1349 -0.2512 17 6 5.8576 -0.3526 -0.4525 18 16 5.9658 -0.9741 -2.0419 19 6 4.2908 -0.5298 -2.3492 20 6 3.5653 -0.7554 -3.6185 21 6 2.2247 -0.4084 -3.8862 22 7 1.9501 -0.7682 -5.1114 23 7 3.0917 -1.3543 -5.6710 24 6 3.2008 -1.8963 -7.0276 25 6 4.0711 -1.3391 -4.7461 26 7 3.7930 0.0317 -1.2895 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.5311 1.9412 2.5055 33 1 3.1041 1.5100 3.2182 34 1 1.9875 4.4000 5.2090 35 1 6.6564 -0.3500 0.2745 36 1 1.5443 0.0716 -3.1984 37 1 3.5323 -1.1111 -7.7070 38 1 3.9231 -2.7127 -7.0357 39 1 2.2282 -2.2685 -7.3495 40 1 5.0738 -1.7198 -4.8726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359384329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:50 Heat of formation + Delta-G solvation = 108.019758 kcal Electronic energy + Delta-G solvation = -25489.475858 eV Core-core repulsion = 21819.656129 eV Total energy + Delta-G solvation = -3669.819729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.23933 -41.51244 -39.40646 -37.28023 -35.10869 -34.42832 -33.65799 -32.62769 -30.53622 -29.86009 -27.84072 -26.95705 -26.58721 -24.80697 -23.09924 -22.21235 -21.20807 -20.84883 -19.90123 -19.07756 -18.61550 -18.11004 -17.53202 -16.87056 -16.59961 -16.35762 -16.30967 -15.72064 -15.59223 -15.22098 -15.02507 -14.58500 -14.45855 -14.22188 -14.11409 -13.81540 -13.49489 -13.34790 -13.28400 -13.08688 -13.01864 -12.74005 -12.59130 -12.25120 -12.15589 -11.82409 -11.68796 -11.04492 -11.03721 -10.65454 -10.56118 -10.49608 -10.28262 -9.99402 -9.49506 -8.94423 -8.23025 -6.38748 -0.58030 0.25212 0.55778 0.65415 1.06554 1.35792 1.39045 1.41912 1.50088 1.58218 1.94264 2.30692 2.46617 2.54457 2.93864 3.05972 3.62782 3.88689 3.94020 4.13806 4.20216 4.27329 4.33052 4.38370 4.51181 4.53503 4.67938 4.72184 4.80303 4.86089 4.97852 5.08584 5.19167 5.25773 5.47928 5.52409 5.74891 5.79942 5.96959 6.02320 6.04405 6.46788 6.61033 6.69023 6.72979 7.21827 7.37691 8.84342 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.003294 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.559832 B = 8498.777027 C = 9170.132982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.133 3.867 4 N -0.580 5.580 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.051 0.949 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.971 3.029 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.273 1.273 14 C 0.567 3.433 15 O -0.590 6.590 16 C 0.007 3.993 17 C -0.239 4.239 18 S 0.251 5.749 19 C 0.134 3.866 20 C -0.203 4.203 21 C 0.089 3.911 22 N -0.323 5.323 23 N -0.363 5.363 24 C 0.088 3.912 25 C 0.111 3.889 26 N -0.453 5.453 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.023 0.977 33 H 0.001 0.999 34 H 0.268 0.732 35 H 0.185 0.815 36 H 0.187 0.813 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -15.024 -27.439 31.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.165 4.165 3 C 0.011 3.989 4 N -0.307 5.307 5 C 0.142 3.858 6 C -0.584 4.584 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.795 3.205 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.198 1.198 14 C 0.353 3.647 15 O -0.472 6.472 16 C -0.128 4.128 17 C -0.382 4.382 18 S 0.511 5.489 19 C -0.143 4.143 20 C -0.220 4.220 21 C -0.100 4.100 22 N -0.144 5.144 23 N -0.142 5.142 24 C -0.051 4.051 25 C -0.042 4.042 26 N -0.169 5.169 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.041 0.959 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.203 0.797 36 H 0.204 0.796 37 H 0.111 0.889 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.524 -15.362 -28.402 32.606 hybrid contribution 0.341 1.495 2.492 2.926 sum 4.865 -13.867 -25.910 29.787 Atomic orbital electron populations 1.23929 0.95198 1.02536 1.00528 1.22999 0.95997 0.97728 0.99806 1.21168 0.92145 0.95442 0.90148 1.48064 1.14853 1.51804 1.16024 1.18812 0.94522 0.91257 0.81220 1.21651 1.38936 0.95353 1.02417 0.93072 1.25871 0.94786 1.03865 0.94447 1.70059 1.42278 1.37816 1.06462 0.85372 0.78857 0.78666 0.77653 1.18757 1.20254 1.19782 1.17831 0.81745 0.78450 0.86652 1.90716 1.54030 1.62208 1.40224 1.19875 0.91967 1.06585 0.94355 1.26572 1.01511 1.05352 1.04726 1.82912 1.10279 1.53707 1.01987 1.25409 0.94652 0.99070 0.95148 1.17802 0.95306 1.16738 0.92116 1.24118 0.95257 0.97372 0.93218 1.77329 1.08220 1.18408 1.10451 1.48819 1.07492 1.44505 1.13419 1.22390 1.05971 1.00712 0.76057 1.23039 0.96473 0.97340 0.87372 1.67347 1.33202 1.17364 0.99021 0.88304 0.86885 0.88611 0.91628 0.86030 0.95922 0.98095 0.92264 0.79730 0.79616 0.88928 0.85730 0.88872 0.76033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.36 14.32 67.78 0.97 -4.39 16 2 C -0.15 -4.95 8.79 25.65 0.23 -4.72 16 3 C 0.13 5.24 5.45 85.63 0.47 5.70 16 4 N -0.58 -28.49 2.46 -834.55 -2.05 -30.54 16 5 C 0.26 15.40 5.16 85.64 0.44 15.84 16 6 C -0.55 -33.31 9.39 25.60 0.24 -33.07 16 7 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 8 C 0.01 0.57 5.46 84.65 0.46 1.03 16 9 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 10 Si 0.97 46.53 29.54 68.60 2.03 48.55 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 14 C 0.57 27.51 7.58 86.62 0.66 28.17 16 15 O -0.59 -33.28 16.22 -4.12 -0.07 -33.34 16 16 C 0.01 0.26 6.44 40.65 0.26 0.52 16 17 C -0.24 -6.99 10.56 67.09 0.71 -6.28 16 18 S 0.25 4.48 22.96 -56.49 -1.30 3.18 16 19 C 0.13 3.11 7.46 87.56 0.65 3.76 16 20 C -0.20 -3.90 6.09 -20.39 -0.12 -4.02 16 21 C 0.09 1.95 11.98 85.56 1.02 2.98 16 22 N -0.32 -6.69 12.53 -56.36 -0.71 -7.40 16 23 N -0.36 -4.64 4.00 -368.61 -1.47 -6.12 16 24 C 0.09 0.25 11.45 127.77 1.46 1.72 16 25 C 0.11 1.27 11.25 83.89 0.94 2.21 16 26 N -0.45 -14.09 5.47 -179.53 -0.98 -15.07 16 27 H 0.10 2.82 7.84 -2.91 -0.02 2.80 16 28 H 0.11 2.77 8.06 -2.91 -0.02 2.74 16 29 H 0.10 3.32 7.65 -2.91 -0.02 3.30 16 30 H 0.07 2.65 7.67 -2.39 -0.02 2.64 16 31 H 0.12 4.49 5.27 -2.39 -0.01 4.48 16 32 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 33 H 0.00 0.06 7.38 -2.39 -0.02 0.05 16 34 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 35 H 0.19 5.36 8.00 -2.91 -0.02 5.34 16 36 H 0.19 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.12 -0.46 8.14 -2.38 -0.02 -0.48 16 39 H 0.09 0.31 8.14 -2.39 -0.02 0.30 16 40 H 0.22 0.43 8.06 -2.92 -0.02 0.40 16 Total: -1.00 -84.60 365.75 5.19 -79.41 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.06 Total: 9.54 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 8.39 Total: 9.43 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -4.93 Total: -116.76 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.07 Total: -33.34 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.30 Total: 3.18 kcal Total: -84.60 5.19 -79.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359384329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.427 kcal (2) G-P(sol) polarization free energy of solvation -84.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds