Wall clock time and date at job start Tue Mar 31 2020 16:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00060 * 2 1 4 4 C 1.50704 * 109.47032 * 264.89027 * 3 2 1 5 5 N 1.30517 * 126.34580 * 274.95766 * 4 3 2 6 6 N 1.28597 * 109.67162 * 179.82149 * 5 4 3 7 7 C 1.30515 * 109.67602 * 0.45409 * 6 5 4 8 8 N 1.35494 * 126.34464 * 95.27195 * 4 3 2 9 9 C 1.46497 * 126.98253 * 359.97438 * 8 4 3 10 10 C 1.34781 * 119.99732 * 180.02562 * 2 1 3 11 11 O 1.21550 * 119.99344 * 188.36890 * 10 2 1 12 12 C 1.47855 * 120.00261 * 8.37495 * 10 2 1 13 13 C 1.39678 * 120.09917 * 343.10603 * 12 10 2 14 14 C 1.38041 * 120.03813 * 179.97438 * 13 12 10 15 15 C 1.38183 * 120.24468 * 0.02562 * 14 13 12 16 16 C 1.39185 * 120.19869 * 0.03878 * 15 14 13 17 17 S 1.76206 * 120.01854 * 180.02562 * 16 15 14 18 18 C 1.76204 * 99.99750 * 274.92006 * 17 16 15 19 19 H 1.07992 * 120.00292 * 4.99936 * 18 17 16 20 20 C 1.38733 * 119.99573 * 185.00156 * 18 17 16 21 21 N 1.31626 * 119.99518 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00103 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47343 * 89.99699 * 22 20 18 24 24 H 1.48501 * 109.47039 * 209.99742 * 22 20 18 25 25 H 1.48503 * 109.47387 * 329.99649 * 22 20 18 26 26 C 1.38876 * 119.96025 * 359.94166 * 16 15 14 27 27 H 1.09001 * 109.46730 * 247.62202 * 1 2 3 28 28 H 1.08995 * 109.47044 * 7.61554 * 1 2 3 29 29 H 1.09000 * 109.47433 * 127.62612 * 1 2 3 30 30 H 1.08997 * 109.47038 * 24.88690 * 3 2 1 31 31 H 1.08997 * 109.47175 * 144.89147 * 3 2 1 32 32 H 1.08000 * 126.35173 * 179.72610 * 7 6 5 33 33 H 1.09008 * 109.46881 * 95.00422 * 9 8 4 34 34 H 1.09001 * 109.47706 * 214.99802 * 9 8 4 35 35 H 1.08994 * 109.47467 * 335.00373 * 9 8 4 36 36 H 1.07997 * 119.98190 * 359.97438 * 13 12 10 37 37 H 1.07993 * 119.87854 * 180.02562 * 14 13 12 38 38 H 1.07998 * 119.90069 * 180.02562 * 15 14 13 39 39 H 0.97006 * 119.99591 * 180.02562 * 21 20 18 40 40 H 1.08004 * 120.12091 * 180.32017 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5583 1.6405 -1.4152 5 7 3.6064 1.2342 -2.0785 6 7 3.5964 1.7447 -3.2587 7 6 2.5467 2.5075 -3.3988 8 7 1.8578 2.4631 -2.2328 9 6 0.6090 3.1622 -1.9199 10 6 2.1389 -1.1673 -0.0005 11 8 3.3447 -1.1729 0.1527 12 6 1.4114 -2.4408 -0.1876 13 6 0.0264 -2.4886 -0.0127 14 6 -0.6515 -3.6782 -0.1882 15 6 0.0350 -4.8258 -0.5366 16 6 1.4152 -4.7898 -0.7120 17 16 2.2858 -6.2558 -1.1569 18 6 2.5314 -6.9618 0.4388 19 1 2.0915 -6.4968 1.3085 20 6 3.2900 -8.1150 0.5777 21 7 3.4739 -8.6421 1.7697 22 14 4.0516 -8.9188 -0.9267 23 1 5.4054 -8.3538 -1.1579 24 1 4.1577 -10.3834 -0.7051 25 1 3.1973 -8.6583 -2.1131 26 6 2.1057 -3.5975 -0.5380 27 1 -0.3633 -0.3913 0.9503 28 1 -0.3633 1.0186 -0.1362 29 1 -0.3634 -0.6274 -0.8139 30 1 1.5719 2.0495 0.4325 31 1 3.1072 1.1630 0.5910 32 1 2.2770 3.0698 -4.2805 33 1 0.8340 4.1723 -1.5773 34 1 -0.0134 3.2120 -2.8134 35 1 0.0771 2.6228 -1.1363 36 1 -0.5143 -1.5944 0.2599 37 1 -1.7224 -3.7122 -0.0528 38 1 -0.5011 -5.7534 -0.6728 39 1 4.0047 -9.4482 1.8669 40 1 3.1760 -3.5655 -0.6786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359765366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:24 Heat of formation + Delta-G solvation = 119.311906 kcal Electronic energy + Delta-G solvation = -25234.519412 eV Core-core repulsion = 21565.189347 eV Total energy + Delta-G solvation = -3669.330064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.35392 -40.38590 -37.93908 -36.19675 -35.26584 -32.47161 -32.44504 -30.72952 -30.49670 -28.38094 -27.70244 -26.83614 -25.64351 -23.18005 -22.64772 -22.40078 -21.26350 -19.90407 -18.12055 -17.58186 -17.02324 -16.95430 -16.50775 -15.95438 -15.84308 -15.41511 -15.08375 -14.83313 -14.39056 -14.24077 -13.97048 -13.72956 -13.44969 -13.35444 -13.18808 -12.97622 -12.77642 -12.52181 -12.36636 -11.67167 -11.43456 -11.19322 -11.06441 -10.97247 -10.54470 -10.49157 -10.48468 -9.97691 -9.84336 -9.47676 -9.16534 -9.06294 -9.05009 -8.62520 -8.10921 -7.09788 -6.29801 -4.05022 1.14419 1.41251 1.61192 2.10088 2.51933 2.87375 2.98774 3.02740 3.31449 3.42297 3.53394 3.93279 4.00808 4.07674 4.17982 4.29741 4.34282 4.43324 4.50511 4.66274 4.75205 4.89522 4.94171 5.08569 5.10797 5.17413 5.18884 5.22913 5.32330 5.50824 5.68405 5.81786 5.86283 5.91737 6.11790 6.21047 6.49924 6.51152 6.60259 6.84846 7.10111 7.18268 7.94503 8.15554 8.47518 8.55478 9.14347 10.79678 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.002899 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.595414 B = 9655.551022 C =10277.163279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.619 5.619 3 C 0.206 3.794 4 C 0.153 3.847 5 N -0.262 5.262 6 N -0.296 5.296 7 C 0.148 3.852 8 N -0.477 5.477 9 C 0.070 3.930 10 C 0.567 3.433 11 O -0.504 6.504 12 C -0.150 4.150 13 C -0.135 4.135 14 C -0.142 4.142 15 C -0.052 4.052 16 C -0.085 4.085 17 S -0.113 6.113 18 C -0.508 4.508 19 H 0.091 0.909 20 C 0.095 3.905 21 N -0.877 5.877 22 Si 0.857 3.143 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.016 4.016 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.218 0.782 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.272 0.728 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.084 26.377 -5.593 30.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.355 5.355 3 C 0.080 3.920 4 C -0.116 4.116 5 N -0.102 5.102 6 N -0.135 5.135 7 C -0.140 4.140 8 N -0.169 5.169 9 C -0.073 4.073 10 C 0.357 3.643 11 O -0.378 6.378 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.162 4.162 15 C -0.073 4.073 16 C -0.195 4.195 17 S 0.121 5.879 18 C -0.655 4.655 19 H 0.109 0.891 20 C -0.114 4.114 21 N -0.513 5.513 22 Si 0.682 3.318 23 H -0.189 1.189 24 H -0.198 1.198 25 H -0.164 1.164 26 C -0.038 4.038 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.234 0.766 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.179 0.821 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.082 0.918 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.690 25.044 -6.747 28.450 hybrid contribution -1.381 0.738 0.868 1.791 sum -13.071 25.783 -5.879 29.498 Atomic orbital electron populations 1.22635 0.79948 1.02413 1.02648 1.47684 1.06526 1.05099 1.76187 1.19621 0.99847 0.85663 0.86821 1.25486 0.92304 0.95887 0.97916 1.74459 1.17227 1.19157 0.99356 1.74367 1.18015 1.09842 1.11298 1.26495 0.92554 1.03396 0.91526 1.46269 1.21489 1.36543 1.12590 1.22160 0.83490 0.97738 1.03936 1.18485 0.86957 0.83161 0.75722 1.90834 1.13889 1.86551 1.46507 1.19720 0.94068 0.93324 1.08417 1.22927 0.93641 1.00113 0.98528 1.21108 0.99778 0.92778 1.02544 1.21951 0.93644 0.98264 0.93462 1.22172 0.96103 0.98550 1.02697 1.83083 1.72794 1.16430 1.15635 1.22237 1.38635 1.14000 0.90620 0.89097 1.24736 0.94606 0.95779 0.96246 1.69929 1.38373 1.21084 1.21900 0.86735 0.81657 0.79474 0.83921 1.18945 1.19819 1.16366 1.21866 1.00486 0.89991 0.91458 0.90288 0.91419 0.89777 0.88451 0.86167 0.76555 0.89742 0.88870 0.89198 0.82142 0.85768 0.85056 0.91827 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 8.53 59.85 0.51 0.91 16 2 N -0.62 -6.72 2.87 -203.48 -0.58 -7.31 16 3 C 0.21 1.92 5.62 -5.19 -0.03 1.90 16 4 C 0.15 1.76 7.57 -154.99 -1.17 0.59 16 5 N -0.26 -4.28 12.21 32.80 0.40 -3.87 16 6 N -0.30 -4.39 12.21 29.69 0.36 -4.03 16 7 C 0.15 1.36 12.74 -89.94 -1.15 0.22 16 8 N -0.48 -3.68 3.15 -122.69 -0.39 -4.07 16 9 C 0.07 0.14 10.94 59.85 0.65 0.79 16 10 C 0.57 9.24 7.53 -12.32 -0.09 9.14 16 11 O -0.50 -10.28 16.10 5.32 0.09 -10.20 16 12 C -0.15 -2.55 5.81 -105.00 -0.61 -3.16 16 13 C -0.13 -1.76 7.95 -39.12 -0.31 -2.08 16 14 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 15 C -0.05 -0.94 9.79 -39.25 -0.38 -1.32 16 16 C -0.08 -1.82 5.45 -38.99 -0.21 -2.03 16 17 S -0.11 -2.84 19.38 -107.50 -2.08 -4.92 16 18 C -0.51 -14.88 10.01 30.92 0.31 -14.57 16 19 H 0.09 2.88 8.02 -52.49 -0.42 2.46 16 20 C 0.10 2.80 5.50 -17.46 -0.10 2.70 16 21 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 22 Si 0.86 21.55 27.73 -169.99 -4.71 16.83 16 23 H -0.26 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 26 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 27 H 0.08 0.41 6.68 -51.93 -0.35 0.06 16 28 H 0.07 0.16 6.07 -51.93 -0.32 -0.15 16 29 H 0.08 0.57 5.90 -51.93 -0.31 0.27 16 30 H 0.10 0.43 7.23 -51.93 -0.38 0.06 16 31 H 0.12 1.35 7.48 -51.93 -0.39 0.96 16 32 H 0.22 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.08 0.04 8.14 -51.92 -0.42 -0.39 16 34 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 35 H 0.09 0.06 5.72 -51.93 -0.30 -0.23 16 36 H 0.16 1.37 2.81 -75.61 -0.21 1.16 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.14 3.10 7.74 -52.48 -0.41 2.70 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -40.56 351.79 -8.52 -49.08 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.34 Total: -0.84 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.34 Total: -10.01 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.57 Total: -45.25 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.08 Total: -4.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -40.56 -8.52 -49.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359765366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.394 kcal (2) G-P(sol) polarization free energy of solvation -40.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds