Wall clock time and date at job start Tue Mar 31 2020 16:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00060 * 2 1 4 4 C 1.50704 * 109.47032 * 264.89027 * 3 2 1 5 5 N 1.30517 * 126.34580 * 274.95766 * 4 3 2 6 6 N 1.28597 * 109.67162 * 179.82149 * 5 4 3 7 7 C 1.30515 * 109.67602 * 0.45409 * 6 5 4 8 8 N 1.35494 * 126.34464 * 95.27195 * 4 3 2 9 9 C 1.46497 * 126.98253 * 359.97438 * 8 4 3 10 10 C 1.34781 * 119.99732 * 180.02562 * 2 1 3 11 11 O 1.21550 * 119.99344 * 188.36890 * 10 2 1 12 12 C 1.47855 * 120.00261 * 8.37495 * 10 2 1 13 13 C 1.39678 * 120.09917 * 343.10603 * 12 10 2 14 14 C 1.38041 * 120.03813 * 179.97438 * 13 12 10 15 15 C 1.38183 * 120.24468 * 0.02562 * 14 13 12 16 16 C 1.39185 * 120.19869 * 0.03878 * 15 14 13 17 17 S 1.76206 * 120.01854 * 180.02562 * 16 15 14 18 18 C 1.76204 * 99.99750 * 274.92006 * 17 16 15 19 19 H 1.07992 * 120.00292 * 4.99936 * 18 17 16 20 20 C 1.38733 * 119.99573 * 185.00156 * 18 17 16 21 21 N 1.31626 * 119.99518 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00103 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47343 * 89.99699 * 22 20 18 24 24 H 1.48501 * 109.47039 * 209.99742 * 22 20 18 25 25 H 1.48503 * 109.47387 * 329.99649 * 22 20 18 26 26 C 1.38876 * 119.96025 * 359.94166 * 16 15 14 27 27 H 1.09001 * 109.46730 * 247.62202 * 1 2 3 28 28 H 1.08995 * 109.47044 * 7.61554 * 1 2 3 29 29 H 1.09000 * 109.47433 * 127.62612 * 1 2 3 30 30 H 1.08997 * 109.47038 * 24.88690 * 3 2 1 31 31 H 1.08997 * 109.47175 * 144.89147 * 3 2 1 32 32 H 1.08000 * 126.35173 * 179.72610 * 7 6 5 33 33 H 1.09008 * 109.46881 * 95.00422 * 9 8 4 34 34 H 1.09001 * 109.47706 * 214.99802 * 9 8 4 35 35 H 1.08994 * 109.47467 * 335.00373 * 9 8 4 36 36 H 1.07997 * 119.98190 * 359.97438 * 13 12 10 37 37 H 1.07993 * 119.87854 * 180.02562 * 14 13 12 38 38 H 1.07998 * 119.90069 * 180.02562 * 15 14 13 39 39 H 0.97006 * 119.99591 * 180.02562 * 21 20 18 40 40 H 1.08004 * 120.12091 * 180.32017 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5583 1.6405 -1.4152 5 7 3.6064 1.2342 -2.0785 6 7 3.5964 1.7447 -3.2587 7 6 2.5467 2.5075 -3.3988 8 7 1.8578 2.4631 -2.2328 9 6 0.6090 3.1622 -1.9199 10 6 2.1389 -1.1673 -0.0005 11 8 3.3447 -1.1729 0.1527 12 6 1.4114 -2.4408 -0.1876 13 6 0.0264 -2.4886 -0.0127 14 6 -0.6515 -3.6782 -0.1882 15 6 0.0350 -4.8258 -0.5366 16 6 1.4152 -4.7898 -0.7120 17 16 2.2858 -6.2558 -1.1569 18 6 2.5314 -6.9618 0.4388 19 1 2.0915 -6.4968 1.3085 20 6 3.2900 -8.1150 0.5777 21 7 3.4739 -8.6421 1.7697 22 14 4.0516 -8.9188 -0.9267 23 1 5.4054 -8.3538 -1.1579 24 1 4.1577 -10.3834 -0.7051 25 1 3.1973 -8.6583 -2.1131 26 6 2.1057 -3.5975 -0.5380 27 1 -0.3633 -0.3913 0.9503 28 1 -0.3633 1.0186 -0.1362 29 1 -0.3634 -0.6274 -0.8139 30 1 1.5719 2.0495 0.4325 31 1 3.1072 1.1630 0.5910 32 1 2.2770 3.0698 -4.2805 33 1 0.8340 4.1723 -1.5773 34 1 -0.0134 3.2120 -2.8134 35 1 0.0771 2.6228 -1.1363 36 1 -0.5143 -1.5944 0.2599 37 1 -1.7224 -3.7122 -0.0528 38 1 -0.5011 -5.7534 -0.6728 39 1 4.0047 -9.4482 1.8669 40 1 3.1760 -3.5655 -0.6786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359765366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:23 Heat of formation + Delta-G solvation = 90.186494 kcal Electronic energy + Delta-G solvation = -25235.782384 eV Core-core repulsion = 21565.189347 eV Total energy + Delta-G solvation = -3670.593037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.11306 -41.53839 -39.23358 -37.20568 -35.90521 -34.74476 -33.41669 -32.07203 -31.59765 -28.99168 -28.19458 -27.93407 -27.75708 -24.35366 -23.78150 -23.30640 -22.14929 -20.97396 -19.98877 -18.47342 -18.19553 -17.86277 -17.59283 -17.15889 -16.89030 -16.68586 -16.31668 -16.03421 -15.67016 -15.09061 -15.04377 -14.95149 -14.56603 -14.36819 -14.14741 -13.97879 -13.92510 -13.59353 -13.29570 -13.18745 -13.11374 -12.74005 -12.54636 -12.46112 -11.94471 -11.69633 -11.30021 -11.26151 -11.21452 -11.05620 -10.82821 -10.37299 -10.12212 -9.88138 -9.72124 -9.17962 -8.56725 -6.30960 -0.19021 0.18845 0.70580 1.03309 1.28831 1.40848 1.50319 1.63762 1.73632 1.79732 2.12547 2.19140 2.55627 2.81332 2.93317 3.28600 3.37486 3.69841 3.83819 3.90304 3.92962 4.00058 4.18255 4.30683 4.38307 4.44487 4.45981 4.56015 4.61500 4.65709 4.69626 4.83991 4.87574 4.91161 5.15842 5.16454 5.25896 5.36564 5.43110 5.66442 5.84698 5.98533 6.07030 6.13823 6.85910 7.00835 7.75548 8.56988 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.002899 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.595414 B = 9655.551022 C =10277.163279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.603 5.603 3 C 0.205 3.795 4 C 0.152 3.848 5 N -0.339 5.339 6 N -0.363 5.363 7 C 0.165 3.835 8 N -0.464 5.464 9 C 0.056 3.944 10 C 0.559 3.441 11 O -0.565 6.565 12 C -0.158 4.158 13 C -0.104 4.104 14 C -0.123 4.123 15 C -0.064 4.064 16 C -0.119 4.119 17 S -0.125 6.125 18 C -0.522 4.522 19 H 0.047 0.953 20 C 0.042 3.958 21 N -0.918 5.918 22 Si 0.921 3.079 23 H -0.265 1.265 24 H -0.253 1.253 25 H -0.228 1.228 26 C -0.049 4.049 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.263 0.737 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.223 0.777 37 H 0.181 0.819 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.072 29.983 -6.246 36.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.336 5.336 3 C 0.080 3.920 4 C -0.119 4.119 5 N -0.179 5.179 6 N -0.202 5.202 7 C -0.124 4.124 8 N -0.154 5.154 9 C -0.084 4.084 10 C 0.348 3.652 11 O -0.443 6.443 12 C -0.163 4.163 13 C -0.121 4.121 14 C -0.142 4.142 15 C -0.085 4.085 16 C -0.230 4.230 17 S 0.109 5.891 18 C -0.669 4.669 19 H 0.066 0.934 20 C -0.163 4.163 21 N -0.556 5.556 22 Si 0.741 3.259 23 H -0.190 1.190 24 H -0.177 1.177 25 H -0.152 1.152 26 C -0.071 4.071 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.103 0.897 30 H 0.179 0.821 31 H 0.109 0.891 32 H 0.279 0.721 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.239 0.761 37 H 0.199 0.801 38 H 0.152 0.848 39 H 0.088 0.912 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.760 28.703 -7.399 34.051 hybrid contribution -0.035 -0.044 1.120 1.121 sum -16.795 28.659 -6.279 33.806 Atomic orbital electron populations 1.23058 0.76371 1.06503 1.03745 1.47648 1.08659 1.03716 1.73618 1.19918 1.00107 0.86278 0.85732 1.25644 0.91802 0.95929 0.98522 1.74322 1.20704 1.22064 1.00834 1.74206 1.21541 1.12742 1.11732 1.27291 0.90862 1.01310 0.92916 1.46508 1.22462 1.35380 1.11085 1.22710 0.81211 0.98439 1.06008 1.18554 0.86344 0.84656 0.75604 1.90808 1.16511 1.87532 1.49491 1.19937 0.96000 0.92453 1.07923 1.23784 0.91632 1.02143 0.94529 1.21714 1.02245 0.90920 0.99331 1.22125 0.92050 1.00475 0.93848 1.22018 0.97585 0.96545 1.06839 1.82660 1.74269 1.19050 1.13115 1.22345 1.38417 1.14251 0.91842 0.93449 1.25699 0.94910 0.96259 0.99450 1.70026 1.39432 1.21968 1.24158 0.85791 0.80515 0.79232 0.80338 1.18996 1.17719 1.15184 1.21595 0.99074 0.91955 0.94454 0.87946 0.85927 0.89658 0.82098 0.89139 0.72135 0.87648 0.86495 0.86999 0.76116 0.80144 0.84790 0.91191 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 8.53 127.77 1.09 1.32 16 2 N -0.60 -11.28 2.87 -915.95 -2.63 -13.91 16 3 C 0.20 3.31 5.62 85.63 0.48 3.79 16 4 C 0.15 3.29 7.57 137.98 1.04 4.34 16 5 N -0.34 -11.62 12.21 -50.15 -0.61 -12.23 16 6 N -0.36 -11.11 12.21 -59.99 -0.73 -11.84 16 7 C 0.17 2.72 12.74 180.11 2.30 5.01 16 8 N -0.46 -5.51 3.15 -542.07 -1.71 -7.21 16 9 C 0.06 -0.13 10.94 127.77 1.40 1.26 16 10 C 0.56 18.39 7.53 86.79 0.65 19.05 16 11 O -0.57 -24.99 16.10 -3.87 -0.06 -25.05 16 12 C -0.16 -5.35 5.81 -20.11 -0.12 -5.46 16 13 C -0.10 -2.30 7.95 22.57 0.18 -2.12 16 14 C -0.12 -2.91 10.02 22.21 0.22 -2.69 16 15 C -0.06 -2.27 9.79 22.48 0.22 -2.05 16 16 C -0.12 -5.38 5.45 22.65 0.12 -5.26 16 17 S -0.12 -6.61 19.38 -56.49 -1.09 -7.70 16 18 C -0.52 -32.53 10.01 67.94 0.68 -31.85 16 19 H 0.05 3.25 8.02 -2.91 -0.02 3.22 16 20 C 0.04 2.57 5.50 84.84 0.47 3.04 16 21 N -0.92 -58.47 13.97 21.64 0.30 -58.17 16 22 Si 0.92 45.99 27.73 68.60 1.90 47.89 16 23 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.25 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.23 -10.91 6.74 99.48 0.67 -10.24 16 26 C -0.05 -2.18 9.34 22.70 0.21 -1.97 16 27 H 0.10 0.21 6.68 -2.39 -0.02 0.20 16 28 H 0.12 -0.55 6.07 -2.39 -0.01 -0.56 16 29 H 0.09 0.55 5.90 -2.39 -0.01 0.53 16 30 H 0.16 0.47 7.23 -2.39 -0.02 0.45 16 31 H 0.09 2.07 7.48 -2.39 -0.02 2.05 16 32 H 0.26 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.11 -0.58 8.14 -2.38 -0.02 -0.60 16 34 H 0.12 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.11 -0.75 5.72 -2.39 -0.01 -0.76 16 36 H 0.22 2.16 2.81 -24.63 -0.07 2.09 16 37 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.28 16.26 8.31 -92.70 -0.77 15.49 16 40 H 0.10 5.01 7.74 -2.91 -0.02 4.99 16 Total: -1.00 -106.27 351.79 5.31 -100.96 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: 1.00 Total: 0.86 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 8.95 Total: -13.60 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -5.38 Total: -103.36 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Atomic # 16 Polarization: -6.61 SS G_CDS: -1.09 Total: -7.70 kcal Total: -106.27 5.31 -100.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359765366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.146 kcal (2) G-P(sol) polarization free energy of solvation -106.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds