Wall clock time and date at job start Tue Mar 31 2020 16:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.30797 * 120.00282 * 2 1 4 4 N 1.35543 * 125.33025 * 180.02562 * 3 2 1 5 5 H 0.96997 * 122.71378 * 359.95264 * 4 3 2 6 6 C 1.37688 * 114.57533 * 179.97438 * 4 3 2 7 7 C 1.46469 * 122.40146 * 179.97438 * 6 4 3 8 8 O 1.21729 * 119.99979 * 154.57562 * 7 6 4 9 9 N 1.34779 * 119.99468 * 334.57830 * 7 6 4 10 10 C 1.46499 * 120.00266 * 3.17995 * 9 7 6 11 11 C 1.50693 * 109.47127 * 95.81668 * 10 9 7 12 12 H 1.08002 * 120.00460 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99686 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99859 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47286 * 60.00235 * 15 13 11 17 17 H 1.48500 * 109.46766 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47170 * 299.99895 * 15 13 11 19 19 C 1.46502 * 119.99537 * 183.17777 * 9 7 6 20 20 C 1.50696 * 109.47095 * 89.99852 * 19 9 7 21 21 C 1.38672 * 120.42284 * 269.71820 * 20 19 9 22 22 C 1.38622 * 118.42314 * 179.78033 * 21 20 19 23 23 C 1.38227 * 119.16357 * 0.51854 * 22 21 20 24 24 N 1.31861 * 120.76040 * 359.72510 * 23 22 21 25 25 C 1.31886 * 121.72584 * 359.97438 * 24 23 22 26 26 C 1.33499 * 115.20453 * 0.02562 * 6 4 3 27 27 S 1.75849 * 109.86023 * 359.76945 * 26 6 4 28 28 H 1.09003 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47701 * 59.99165 * 1 2 3 30 30 H 1.09006 * 109.47001 * 299.98980 * 1 2 3 31 31 H 1.09005 * 109.46896 * 215.82222 * 10 9 7 32 32 H 1.09003 * 109.46927 * 335.81642 * 10 9 7 33 33 H 0.97006 * 119.99948 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.47094 * 210.00141 * 19 9 7 35 35 H 1.09002 * 109.47163 * 329.99771 * 19 9 7 36 36 H 1.08005 * 120.78381 * 0.02707 * 21 20 19 37 37 H 1.08004 * 120.42007 * 180.22006 * 22 21 20 38 38 H 1.07999 * 119.62458 * 179.74163 * 23 22 21 39 39 H 1.07996 * 119.62010 * 180.02562 * 25 24 23 40 40 H 1.07995 * 125.07063 * 180.02562 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1190 1.1327 0.0000 4 7 3.4686 1.2586 -0.0005 5 1 4.0663 0.4946 -0.0002 6 6 3.9225 2.5585 -0.0009 7 6 5.3487 2.8918 -0.0010 8 8 5.7248 3.9572 -0.4539 9 7 6.2447 2.0187 0.5005 10 6 5.8004 0.7082 0.9816 11 6 5.9798 -0.3149 -0.1101 12 1 6.3848 -0.0188 -1.0666 13 6 5.6280 -1.6294 0.1124 14 7 5.1354 -1.9901 1.2772 15 14 5.8511 -2.8978 -1.2406 16 1 7.2849 -2.9696 -1.6203 17 1 5.4006 -4.2262 -0.7529 18 1 5.0445 -2.5060 -2.4243 19 6 7.6630 2.3802 0.5644 20 6 7.9522 3.0476 1.8843 21 6 7.8430 4.4239 2.0141 22 6 8.1144 4.9938 3.2483 23 6 8.4926 4.1783 4.2983 24 7 8.5910 2.8732 4.1371 25 6 8.3349 2.2962 2.9791 26 6 2.9695 3.4934 -0.0003 27 16 1.3848 2.7312 -0.0057 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 0.5137 0.8901 31 1 6.3924 0.4203 1.8504 32 1 4.7480 0.7613 1.2605 33 1 4.8883 -2.9150 1.4340 34 1 8.2718 1.4809 0.4708 35 1 7.9002 3.0659 -0.2491 36 1 7.5496 5.0367 1.1746 37 1 8.0359 6.0621 3.3864 38 1 8.7098 4.6148 5.2619 39 1 8.4259 1.2242 2.8852 40 1 3.1456 4.5589 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386271492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:10 Heat of formation + Delta-G solvation = 72.705002 kcal Electronic energy + Delta-G solvation = -26256.815106 eV Core-core repulsion = 22585.464015 eV Total energy + Delta-G solvation = -3671.351091 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59137 -39.82427 -38.06445 -35.71308 -34.76200 -33.28962 -32.29185 -31.44149 -30.10277 -28.05248 -26.89279 -26.16357 -23.95308 -23.50132 -23.00070 -21.76028 -20.56168 -19.33543 -17.89610 -17.13566 -16.79971 -16.48959 -16.17235 -15.74886 -15.50063 -15.27442 -14.84873 -14.59782 -14.17008 -13.98734 -13.68498 -13.66411 -13.23560 -13.14237 -12.87931 -12.70176 -12.57256 -12.32418 -11.96570 -11.67266 -11.35538 -11.20234 -11.15318 -10.81298 -10.45057 -10.11547 -10.07326 -9.82845 -9.60084 -9.32906 -9.21435 -8.88986 -8.82133 -8.76239 -8.17891 -6.96832 -6.45194 -4.61293 1.19878 1.40815 1.43507 1.59740 2.00751 2.47393 3.13903 3.18504 3.21462 3.24217 3.44224 3.69462 4.06676 4.16189 4.58998 4.86661 4.90710 5.02752 5.04061 5.16925 5.22195 5.24563 5.51279 5.59641 5.71230 5.76872 5.79546 5.90131 5.96194 6.02099 6.03044 6.25845 6.27350 6.47419 6.80819 6.84509 6.90205 7.11944 7.46131 7.64004 7.74636 7.84817 8.11052 8.23923 8.38508 8.55597 9.11557 10.58410 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.005276 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.151355 B = 5305.602167 C = 7265.759307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.565 5.565 3 C 0.363 3.637 4 N -0.600 5.600 5 H 0.459 0.541 6 C 0.100 3.900 7 C 0.577 3.423 8 O -0.545 6.545 9 N -0.578 5.578 10 C 0.206 3.794 11 C -0.575 4.575 12 H 0.070 0.930 13 C 0.077 3.923 14 N -0.865 5.865 15 Si 0.902 3.098 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.161 3.839 20 C -0.150 4.150 21 C -0.056 4.056 22 C -0.181 4.181 23 C 0.092 3.908 24 N -0.489 5.489 25 C 0.117 3.883 26 C -0.214 4.214 27 S -0.023 6.023 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.274 0.726 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 9.934 1.172 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.299 5.299 3 C -0.023 4.023 4 N -0.242 5.242 5 H 0.321 0.679 6 C -0.017 4.017 7 C 0.362 3.638 8 O -0.425 6.425 9 N -0.307 5.307 10 C 0.086 3.914 11 C -0.613 4.613 12 H 0.088 0.912 13 C -0.131 4.131 14 N -0.500 5.500 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.038 3.962 20 C -0.153 4.153 21 C -0.083 4.083 22 C -0.201 4.201 23 C -0.065 4.065 24 N -0.197 5.197 25 C -0.040 4.040 26 C -0.358 4.358 27 S 0.216 5.784 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.245 9.212 1.771 9.463 hybrid contribution 0.834 -0.320 -1.240 1.529 sum -0.411 8.892 0.531 8.917 Atomic orbital electron populations 1.22138 0.86493 1.02606 1.00040 1.71825 1.08631 1.18339 1.31116 1.24433 0.88844 0.92124 0.96874 1.43807 1.04807 1.08834 1.66783 0.67902 1.19200 0.94741 0.84202 1.03573 1.17186 0.83740 0.84160 0.78722 1.90768 1.79430 1.24173 1.48085 1.48189 1.06231 1.17121 1.59152 1.20147 0.97645 0.77273 0.96333 1.21422 1.46914 0.93014 0.99939 0.91220 1.25013 0.93691 0.98414 0.96031 1.69886 1.38856 1.19270 1.21964 0.86460 0.78854 0.80140 0.81722 1.19796 1.20722 1.19676 1.20226 0.82370 1.00547 0.93085 1.21367 1.00923 0.94667 0.98328 1.21668 0.94172 0.94642 0.97775 1.22113 1.02416 1.01276 0.94247 1.22733 0.95580 0.89464 0.98723 1.67723 1.14598 1.12307 1.25075 1.22833 0.93319 1.00567 0.87303 1.24648 0.92478 1.03088 1.15567 1.85104 1.08863 1.00606 1.83802 0.89960 0.93327 0.93251 0.93587 0.92676 0.91571 0.88277 0.89185 0.84377 0.85122 0.83195 0.82418 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.38 59.84 0.62 1.22 16 2 N -0.57 -11.43 11.05 -68.31 -0.75 -12.18 16 3 C 0.36 7.15 8.33 -89.67 -0.75 6.41 16 4 N -0.60 -12.51 4.32 -10.73 -0.05 -12.56 16 5 H 0.46 10.52 3.80 -40.82 -0.16 10.36 16 6 C 0.10 1.91 6.17 -83.58 -0.52 1.40 16 7 C 0.58 11.17 7.54 -12.94 -0.10 11.07 16 8 O -0.55 -10.67 16.18 5.16 0.08 -10.58 16 9 N -0.58 -10.99 2.44 -178.05 -0.43 -11.42 16 10 C 0.21 4.48 4.68 -5.20 -0.02 4.46 16 11 C -0.57 -13.53 7.56 -34.44 -0.26 -13.79 16 12 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.08 1.88 5.35 -17.82 -0.10 1.79 16 14 N -0.87 -22.27 13.29 55.43 0.74 -21.54 16 15 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.16 2.60 5.60 -5.19 -0.03 2.57 16 20 C -0.15 -2.28 5.48 -104.48 -0.57 -2.86 16 21 C -0.06 -0.78 9.86 -39.28 -0.39 -1.17 16 22 C -0.18 -2.20 10.11 -39.44 -0.40 -2.60 16 23 C 0.09 1.19 11.18 -17.54 -0.20 1.00 16 24 N -0.49 -7.62 10.36 -13.25 -0.14 -7.76 16 25 C 0.12 1.83 10.86 -17.55 -0.19 1.64 16 26 C -0.21 -3.54 10.69 29.07 0.31 -3.23 16 27 S -0.02 -0.37 22.35 -107.50 -2.40 -2.77 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 32 H 0.06 1.30 4.66 -51.93 -0.24 1.06 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.10 1.54 8.02 -51.93 -0.42 1.12 16 35 H 0.09 1.40 7.33 -51.93 -0.38 1.01 16 36 H 0.14 1.88 7.86 -52.48 -0.41 1.47 16 37 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 38 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.18 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -27.35 357.21 -9.71 -37.06 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -4.53 Total: 13.79 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -2.58 Total: 7.91 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.64 Total: -65.45 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.40 Total: -2.77 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.35 -9.71 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386271492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.762 kcal (2) G-P(sol) polarization free energy of solvation -27.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds