Wall clock time and date at job start Tue Mar 31 2020 16:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.30797 * 120.00282 * 2 1 4 4 N 1.35543 * 125.33025 * 180.02562 * 3 2 1 5 5 H 0.96997 * 122.71378 * 359.95264 * 4 3 2 6 6 C 1.37688 * 114.57533 * 179.97438 * 4 3 2 7 7 C 1.46469 * 122.40146 * 179.97438 * 6 4 3 8 8 O 1.21729 * 119.99979 * 154.57562 * 7 6 4 9 9 N 1.34779 * 119.99468 * 334.57830 * 7 6 4 10 10 C 1.46499 * 120.00266 * 3.17995 * 9 7 6 11 11 C 1.50693 * 109.47127 * 95.81668 * 10 9 7 12 12 H 1.08002 * 120.00460 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99686 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99859 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47286 * 60.00235 * 15 13 11 17 17 H 1.48500 * 109.46766 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47170 * 299.99895 * 15 13 11 19 19 C 1.46502 * 119.99537 * 183.17777 * 9 7 6 20 20 C 1.50696 * 109.47095 * 89.99852 * 19 9 7 21 21 C 1.38672 * 120.42284 * 269.71820 * 20 19 9 22 22 C 1.38622 * 118.42314 * 179.78033 * 21 20 19 23 23 C 1.38227 * 119.16357 * 0.51854 * 22 21 20 24 24 N 1.31861 * 120.76040 * 359.72510 * 23 22 21 25 25 C 1.31886 * 121.72584 * 359.97438 * 24 23 22 26 26 C 1.33499 * 115.20453 * 0.02562 * 6 4 3 27 27 S 1.75849 * 109.86023 * 359.76945 * 26 6 4 28 28 H 1.09003 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47701 * 59.99165 * 1 2 3 30 30 H 1.09006 * 109.47001 * 299.98980 * 1 2 3 31 31 H 1.09005 * 109.46896 * 215.82222 * 10 9 7 32 32 H 1.09003 * 109.46927 * 335.81642 * 10 9 7 33 33 H 0.97006 * 119.99948 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.47094 * 210.00141 * 19 9 7 35 35 H 1.09002 * 109.47163 * 329.99771 * 19 9 7 36 36 H 1.08005 * 120.78381 * 0.02707 * 21 20 19 37 37 H 1.08004 * 120.42007 * 180.22006 * 22 21 20 38 38 H 1.07999 * 119.62458 * 179.74163 * 23 22 21 39 39 H 1.07996 * 119.62010 * 180.02562 * 25 24 23 40 40 H 1.07995 * 125.07063 * 180.02562 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1190 1.1327 0.0000 4 7 3.4686 1.2586 -0.0005 5 1 4.0663 0.4946 -0.0002 6 6 3.9225 2.5585 -0.0009 7 6 5.3487 2.8918 -0.0010 8 8 5.7248 3.9572 -0.4539 9 7 6.2447 2.0187 0.5005 10 6 5.8004 0.7082 0.9816 11 6 5.9798 -0.3149 -0.1101 12 1 6.3848 -0.0188 -1.0666 13 6 5.6280 -1.6294 0.1124 14 7 5.1354 -1.9901 1.2772 15 14 5.8511 -2.8978 -1.2406 16 1 7.2849 -2.9696 -1.6203 17 1 5.4006 -4.2262 -0.7529 18 1 5.0445 -2.5060 -2.4243 19 6 7.6630 2.3802 0.5644 20 6 7.9522 3.0476 1.8843 21 6 7.8430 4.4239 2.0141 22 6 8.1144 4.9938 3.2483 23 6 8.4926 4.1783 4.2983 24 7 8.5910 2.8732 4.1371 25 6 8.3349 2.2962 2.9791 26 6 2.9695 3.4934 -0.0003 27 16 1.3848 2.7312 -0.0057 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 0.5137 0.8901 31 1 6.3924 0.4203 1.8504 32 1 4.7480 0.7613 1.2605 33 1 4.8883 -2.9150 1.4340 34 1 8.2718 1.4809 0.4708 35 1 7.9002 3.0659 -0.2491 36 1 7.5496 5.0367 1.1746 37 1 8.0359 6.0621 3.3864 38 1 8.7098 4.6148 5.2619 39 1 8.4259 1.2242 2.8852 40 1 3.1456 4.5589 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386271492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:09 Heat of formation + Delta-G solvation = 56.720235 kcal Electronic energy + Delta-G solvation = -26257.508258 eV Core-core repulsion = 22585.464015 eV Total energy + Delta-G solvation = -3672.044243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00682 -40.98831 -39.50508 -37.23498 -36.14312 -34.96629 -33.59533 -32.58711 -31.51069 -29.64713 -28.33727 -27.44821 -25.47398 -24.83099 -24.35061 -22.96732 -21.97233 -20.78743 -19.33172 -18.81818 -18.06912 -17.92179 -17.44870 -17.07741 -16.92294 -16.70766 -16.31411 -16.09707 -15.50981 -15.34912 -15.00211 -14.95263 -14.54535 -14.45602 -14.28419 -14.07571 -13.87378 -13.59850 -13.34216 -13.21683 -12.87355 -12.74609 -12.58521 -12.40729 -12.18009 -11.87506 -11.46615 -11.29178 -10.79406 -10.73531 -10.46831 -10.46063 -10.17238 -9.99285 -9.71035 -8.38183 -8.29341 -6.53002 0.00911 0.10646 0.21703 0.34300 0.65315 1.02246 1.38508 1.41632 1.47421 1.78246 2.02804 2.20590 2.38362 2.93594 2.98461 3.49243 3.54499 3.86473 3.89122 3.94459 4.10392 4.10654 4.30522 4.46212 4.49769 4.55258 4.60531 4.63096 4.69780 4.74529 4.84231 4.86744 5.05190 5.20550 5.32944 5.40991 5.55576 5.62366 5.78419 5.81860 6.20392 6.26414 6.61742 6.82375 6.96433 7.02111 7.22249 8.69138 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.005276 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.151355 B = 5305.602167 C = 7265.759307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.608 5.608 3 C 0.335 3.665 4 N -0.619 5.619 5 H 0.447 0.553 6 C 0.066 3.934 7 C 0.576 3.424 8 O -0.550 6.550 9 N -0.580 5.580 10 C 0.224 3.776 11 C -0.570 4.570 12 H 0.064 0.936 13 C 0.040 3.960 14 N -0.894 5.894 15 Si 0.950 3.050 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.277 1.277 19 C 0.161 3.839 20 C -0.158 4.158 21 C -0.063 4.063 22 C -0.168 4.168 23 C 0.089 3.911 24 N -0.513 5.513 25 C 0.100 3.900 26 C -0.195 4.195 27 S 0.047 5.953 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.272 0.728 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.168 0.832 38 H 0.185 0.815 39 H 0.148 0.852 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 12.211 1.149 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.344 5.344 3 C -0.050 4.050 4 N -0.259 5.259 5 H 0.305 0.695 6 C -0.051 4.051 7 C 0.362 3.638 8 O -0.430 6.430 9 N -0.308 5.308 10 C 0.102 3.898 11 C -0.608 4.608 12 H 0.082 0.918 13 C -0.165 4.165 14 N -0.530 5.530 15 Si 0.775 3.225 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.203 1.203 19 C 0.039 3.961 20 C -0.162 4.162 21 C -0.089 4.089 22 C -0.187 4.187 23 C -0.068 4.068 24 N -0.222 5.222 25 C -0.056 4.056 26 C -0.339 4.339 27 S 0.288 5.712 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.201 0.799 39 H 0.165 0.835 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.847 11.523 1.738 11.798 hybrid contribution 0.955 -0.893 -1.201 1.775 sum -0.891 10.630 0.537 10.681 Atomic orbital electron populations 1.22265 0.84223 1.03713 1.01234 1.71786 1.11159 1.19986 1.31468 1.24702 0.88740 0.94203 0.97339 1.43804 1.05380 1.09015 1.67686 0.69474 1.19285 0.95101 0.84204 1.06461 1.17272 0.84034 0.84073 0.78468 1.90747 1.79660 1.24192 1.48437 1.48133 1.07398 1.16186 1.59089 1.19743 0.96576 0.78254 0.95188 1.21551 1.45840 0.93422 1.00004 0.91767 1.25587 0.93638 0.99931 0.97378 1.69973 1.40341 1.19287 1.23393 0.85715 0.79014 0.78312 0.79461 1.18807 1.20781 1.20276 1.20309 0.80867 1.00775 0.94169 1.21222 1.01996 0.95426 0.97507 1.21819 0.94218 0.93971 0.98894 1.22485 1.00294 1.03050 0.92913 1.23357 0.94395 0.88592 1.00433 1.67718 1.15482 1.14020 1.24972 1.22737 0.94540 1.00408 0.87923 1.25123 0.92776 1.03983 1.12030 1.84798 1.06823 0.96968 1.82647 0.89100 0.91773 0.92017 0.95191 0.93956 0.91875 0.88477 0.88499 0.83965 0.81416 0.79857 0.83476 0.77601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.07 10.38 127.77 1.33 2.40 16 2 N -0.61 -24.56 11.05 -370.03 -4.09 -28.65 16 3 C 0.34 13.07 8.33 180.02 1.50 14.57 16 4 N -0.62 -26.05 4.32 -187.84 -0.81 -26.86 16 5 H 0.45 21.06 3.80 -92.71 -0.35 20.71 16 6 C 0.07 2.47 6.17 39.30 0.24 2.72 16 7 C 0.58 22.14 7.54 86.39 0.65 22.79 16 8 O -0.55 -20.92 16.18 -4.44 -0.07 -21.00 16 9 N -0.58 -22.40 2.44 -835.44 -2.04 -24.44 16 10 C 0.22 10.08 4.68 85.63 0.40 10.48 16 11 C -0.57 -27.57 7.56 25.60 0.19 -27.38 16 12 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 13 C 0.04 1.99 5.35 84.66 0.45 2.45 16 14 N -0.89 -47.43 13.29 21.45 0.28 -47.14 16 15 Si 0.95 40.97 29.54 68.60 2.03 43.00 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 C 0.16 5.29 5.60 85.63 0.48 5.77 16 20 C -0.16 -4.83 5.48 -19.77 -0.11 -4.94 16 21 C -0.06 -1.65 9.86 22.47 0.22 -1.43 16 22 C -0.17 -3.61 10.11 22.36 0.23 -3.38 16 23 C 0.09 2.10 11.18 84.69 0.95 3.05 16 24 N -0.51 -15.75 10.36 -195.84 -2.03 -17.77 16 25 C 0.10 3.22 10.86 84.67 0.92 4.14 16 26 C -0.20 -6.03 10.69 66.75 0.71 -5.32 16 27 S 0.05 1.39 22.35 -56.49 -1.26 0.13 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.03 1.43 8.12 -2.38 -0.02 1.41 16 32 H 0.04 2.08 4.66 -2.39 -0.01 2.07 16 33 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 34 H 0.10 3.14 8.02 -2.39 -0.02 3.12 16 35 H 0.10 3.00 7.33 -2.39 -0.02 2.99 16 36 H 0.14 3.62 7.86 -2.91 -0.02 3.60 16 37 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.21 5.19 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -59.61 357.21 0.91 -58.70 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.73 Total: 38.12 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 8.17 Total: 25.92 kcal Atomic # 7 Polarization: -136.19 SS G_CDS: -8.68 Total: -144.87 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.07 Total: -21.00 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.26 Total: 0.13 kcal Total: -59.61 0.91 -58.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386271492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.421 kcal (2) G-P(sol) polarization free energy of solvation -59.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds