Wall clock time and date at job start Tue Mar 31 2020 16:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 117.00233 * 2 1 4 4 C 1.38758 * 120.05445 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.93967 * 179.72092 * 4 3 2 6 6 C 1.38285 * 120.05920 * 0.28391 * 5 4 3 7 7 C 1.38245 * 120.10976 * 359.97438 * 6 5 4 8 8 C 1.38170 * 120.05766 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02654 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46578 * 243.07401 * 9 8 7 11 11 C 1.50694 * 109.47158 * 123.07777 * 9 8 7 12 12 O 1.21284 * 119.99750 * 334.99012 * 11 9 8 13 13 N 1.34779 * 120.00338 * 155.00120 * 11 9 8 14 14 C 1.46497 * 120.00154 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47050 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00076 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00028 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47175 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47188 * 119.99802 * 19 17 15 22 22 H 1.48500 * 109.47091 * 239.99899 * 19 17 15 23 23 C 1.53002 * 109.47196 * 3.07032 * 9 8 7 24 24 F 1.39892 * 109.47042 * 57.89554 * 23 9 8 25 25 F 1.39895 * 109.46685 * 177.89246 * 23 9 8 26 26 F 1.39895 * 109.46987 * 297.88985 * 23 9 8 27 27 H 1.08999 * 109.46745 * 299.99955 * 1 2 3 28 28 H 1.09001 * 109.47466 * 59.99376 * 1 2 3 29 29 H 1.08994 * 109.47737 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.02332 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.96658 * 180.26153 * 5 4 3 32 32 H 1.07999 * 119.94384 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.97044 * 180.02562 * 7 6 5 34 34 H 1.00898 * 111.00206 * 299.99493 * 10 9 8 35 35 H 1.00895 * 111.00687 * 63.95768 * 10 9 8 36 36 H 0.97002 * 119.99631 * 359.97438 * 13 11 9 37 37 H 1.09009 * 109.46774 * 299.99516 * 14 13 11 38 38 H 1.09000 * 109.47486 * 59.99225 * 14 13 11 39 39 H 0.97003 * 119.99903 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 0.0053 6 6 3.3021 3.6757 0.0057 7 6 4.0561 2.5170 0.0009 8 6 3.4312 1.2847 -0.0039 9 6 4.2538 0.0220 -0.0086 10 7 3.9956 -0.7258 -1.2464 11 6 3.8781 -0.8267 1.1786 12 8 3.4037 -0.3096 2.1678 13 7 4.0695 -2.1603 1.1413 14 6 3.7049 -2.9852 2.2957 15 6 4.0164 -4.4295 1.9995 16 1 4.4430 -4.7054 1.0464 17 6 3.7569 -5.3988 2.9451 18 7 3.2379 -5.0627 4.1058 19 14 4.1425 -7.1892 2.5776 20 1 4.7164 -7.3019 1.2127 21 1 5.1232 -7.6982 3.5699 22 1 2.8951 -7.9909 2.6585 23 6 5.7391 0.3807 0.0702 24 9 5.9762 1.1341 1.2248 25 9 6.5002 -0.7923 0.1143 26 9 6.0987 1.1279 -1.0564 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.2129 2.3203 -0.0005 31 1 1.3341 4.5113 0.0091 32 1 3.7924 4.6379 0.0107 33 1 5.1345 2.5750 0.0016 34 1 3.0207 -0.9746 -1.3220 35 1 4.2992 -0.2035 -2.0545 36 1 4.4488 -2.5738 0.3501 37 1 4.2737 -2.6618 3.1675 38 1 2.6390 -2.8777 2.4970 39 1 3.0557 -5.7446 4.7713 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429448904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:01 Heat of formation + Delta-G solvation = -185.535466 kcal Electronic energy + Delta-G solvation = -30585.086318 eV Core-core repulsion = 25885.634717 eV Total energy + Delta-G solvation = -4699.451601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.18462 -47.62072 -47.50739 -40.72052 -38.82053 -37.49106 -35.32307 -34.19843 -32.25703 -30.82595 -30.09252 -28.25618 -27.40765 -26.85313 -24.22635 -22.93265 -22.27248 -21.46903 -19.81984 -18.89127 -18.56420 -18.05807 -17.71091 -16.77117 -16.27996 -15.93644 -15.85133 -15.63727 -15.18795 -14.90241 -14.84510 -14.44140 -14.22691 -14.15601 -13.96256 -13.93699 -13.81014 -13.62965 -13.58972 -13.35410 -13.01467 -12.58559 -12.17474 -12.09022 -11.90304 -11.66572 -11.59855 -11.19462 -11.07294 -10.91661 -10.87422 -10.28244 -9.61690 -9.34280 -9.05341 -8.96629 -8.69829 -8.27380 -7.84260 -6.12866 -4.18745 1.08514 1.32022 2.45557 3.10149 3.25878 3.27025 3.34130 3.37800 3.45890 3.69907 3.78112 3.91267 4.27861 4.38852 4.56746 4.67119 4.76027 4.80747 4.97457 5.11452 5.17812 5.23700 5.25521 5.43061 5.48974 5.50558 5.73564 6.09675 6.15236 6.34419 6.55493 6.61885 7.11245 7.25853 7.31661 7.45260 7.53912 7.71932 7.99893 8.63948 8.79111 9.08063 9.47247 10.97460 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.004402 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.172895 B = 6359.400347 C = 7431.451736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.166 3.834 4 C -0.210 4.210 5 C -0.071 4.071 6 C -0.156 4.156 7 C -0.073 4.073 8 C -0.145 4.145 9 C 0.111 3.889 10 N -0.814 5.814 11 C 0.517 3.483 12 O -0.529 6.529 13 N -0.683 5.683 14 C 0.250 3.750 15 C -0.538 4.538 16 H 0.065 0.935 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.470 3.530 24 F -0.168 7.168 25 F -0.161 7.161 26 F -0.179 7.179 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.372 0.628 35 H 0.352 0.648 36 H 0.401 0.599 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 15.985 -13.170 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.219 6.219 3 C 0.120 3.880 4 C -0.229 4.229 5 C -0.089 4.089 6 C -0.175 4.175 7 C -0.091 4.091 8 C -0.148 4.148 9 C 0.013 3.987 10 N -0.349 5.349 11 C 0.297 3.703 12 O -0.405 6.405 13 N -0.331 5.331 14 C 0.130 3.870 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.140 4.140 18 N -0.525 5.525 19 Si 0.731 3.269 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.209 1.209 23 C 0.414 3.586 24 F -0.149 7.149 25 F -0.142 7.142 26 F -0.160 7.160 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.190 0.810 35 H 0.166 0.834 36 H 0.236 0.764 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.289 15.442 -11.954 19.662 hybrid contribution -0.293 -0.112 -0.644 0.717 sum -2.582 15.330 -12.598 20.010 Atomic orbital electron populations 1.23098 0.77787 1.04556 1.01061 1.86096 1.21901 1.26170 1.87777 1.18571 0.90807 0.84924 0.93727 1.21188 1.00099 0.92099 1.09465 1.20982 0.94651 0.96962 0.96307 1.20961 0.93834 0.98097 1.04560 1.21248 1.00659 0.91154 0.96076 1.19126 0.91270 0.94165 1.10218 1.20922 0.89181 0.93022 0.95588 1.58849 1.28617 1.45739 1.01723 1.19167 0.80994 0.83709 0.86401 1.90699 1.44627 1.72730 1.32492 1.46357 1.60714 1.05340 1.20721 1.19174 0.96395 0.88477 0.82987 1.21265 1.43440 0.91061 1.01895 0.91638 1.24936 0.94788 0.99512 0.94743 1.69989 1.42715 1.33926 1.05857 0.86363 0.78030 0.84048 0.78504 1.19518 1.20842 1.20889 1.19886 0.89808 0.75065 0.73810 1.93222 1.95347 1.76400 1.49976 1.93254 1.77792 1.47187 1.95939 1.93136 1.93316 1.77071 1.52514 0.92395 0.92796 0.87721 0.85071 0.85589 0.85510 0.84867 0.81018 0.83356 0.76381 0.95448 0.95351 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.55 7.37 -19.44 -0.14 -4.69 16 3 C 0.17 2.43 5.99 -39.22 -0.23 2.19 16 4 C -0.21 -2.50 9.04 -39.43 -0.36 -2.86 16 5 C -0.07 -0.75 10.04 -39.61 -0.40 -1.15 16 6 C -0.16 -1.77 10.04 -39.56 -0.40 -2.17 16 7 C -0.07 -0.99 8.14 -39.60 -0.32 -1.31 16 8 C -0.14 -2.21 4.36 -104.47 -0.46 -2.67 16 9 C 0.11 1.83 0.40 -133.91 -0.05 1.77 16 10 N -0.81 -10.91 8.05 -1.14 -0.01 -10.92 16 11 C 0.52 10.96 4.92 -10.99 -0.05 10.90 16 12 O -0.53 -13.07 15.81 5.53 0.09 -12.98 16 13 N -0.68 -15.23 5.34 -61.47 -0.33 -15.56 16 14 C 0.25 6.75 5.43 -5.20 -0.03 6.72 16 15 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 16 H 0.07 1.71 7.60 -52.49 -0.40 1.32 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.47 7.53 2.02 37.16 0.07 7.61 16 24 F -0.17 -2.89 14.96 2.25 0.03 -2.86 16 25 F -0.16 -2.77 16.83 2.25 0.04 -2.73 16 26 F -0.18 -2.38 14.62 2.25 0.03 -2.35 16 27 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.74 4.64 -52.48 -0.24 1.50 16 34 H 0.37 4.91 7.27 -39.29 -0.29 4.62 16 35 H 0.35 3.83 8.44 -39.29 -0.33 3.50 16 36 H 0.40 8.24 7.68 -40.82 -0.31 7.93 16 37 H 0.03 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -32.89 338.13 -5.08 -37.96 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -3.95 Total: 11.59 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.65 Total: 6.88 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.40 Total: -51.98 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.06 Total: -17.67 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.10 Total: -7.94 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.89 -5.08 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429448904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.575 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds