Wall clock time and date at job start Tue Mar 31 2020 16:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 117.00233 * 2 1 4 4 C 1.38758 * 120.05445 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.93967 * 179.72092 * 4 3 2 6 6 C 1.38285 * 120.05920 * 0.28391 * 5 4 3 7 7 C 1.38245 * 120.10976 * 359.97438 * 6 5 4 8 8 C 1.38170 * 120.05766 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02654 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.46578 * 243.07401 * 9 8 7 11 11 C 1.50694 * 109.47158 * 123.07777 * 9 8 7 12 12 O 1.21284 * 119.99750 * 334.99012 * 11 9 8 13 13 N 1.34779 * 120.00338 * 155.00120 * 11 9 8 14 14 C 1.46497 * 120.00154 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47050 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00076 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00028 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47175 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47188 * 119.99802 * 19 17 15 22 22 H 1.48500 * 109.47091 * 239.99899 * 19 17 15 23 23 C 1.53002 * 109.47196 * 3.07032 * 9 8 7 24 24 F 1.39892 * 109.47042 * 57.89554 * 23 9 8 25 25 F 1.39895 * 109.46685 * 177.89246 * 23 9 8 26 26 F 1.39895 * 109.46987 * 297.88985 * 23 9 8 27 27 H 1.08999 * 109.46745 * 299.99955 * 1 2 3 28 28 H 1.09001 * 109.47466 * 59.99376 * 1 2 3 29 29 H 1.08994 * 109.47737 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.02332 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.96658 * 180.26153 * 5 4 3 32 32 H 1.07999 * 119.94384 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.97044 * 180.02562 * 7 6 5 34 34 H 1.00898 * 111.00206 * 299.99493 * 10 9 8 35 35 H 1.00895 * 111.00687 * 63.95768 * 10 9 8 36 36 H 0.97002 * 119.99631 * 359.97438 * 13 11 9 37 37 H 1.09009 * 109.46774 * 299.99516 * 14 13 11 38 38 H 1.09000 * 109.47486 * 59.99225 * 14 13 11 39 39 H 0.97003 * 119.99903 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 0.0053 6 6 3.3021 3.6757 0.0057 7 6 4.0561 2.5170 0.0009 8 6 3.4312 1.2847 -0.0039 9 6 4.2538 0.0220 -0.0086 10 7 3.9956 -0.7258 -1.2464 11 6 3.8781 -0.8267 1.1786 12 8 3.4037 -0.3096 2.1678 13 7 4.0695 -2.1603 1.1413 14 6 3.7049 -2.9852 2.2957 15 6 4.0164 -4.4295 1.9995 16 1 4.4430 -4.7054 1.0464 17 6 3.7569 -5.3988 2.9451 18 7 3.2379 -5.0627 4.1058 19 14 4.1425 -7.1892 2.5776 20 1 4.7164 -7.3019 1.2127 21 1 5.1232 -7.6982 3.5699 22 1 2.8951 -7.9909 2.6585 23 6 5.7391 0.3807 0.0702 24 9 5.9762 1.1341 1.2248 25 9 6.5002 -0.7923 0.1143 26 9 6.0987 1.1279 -1.0564 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.2129 2.3203 -0.0005 31 1 1.3341 4.5113 0.0091 32 1 3.7924 4.6379 0.0107 33 1 5.1345 2.5750 0.0016 34 1 3.0207 -0.9746 -1.3220 35 1 4.2992 -0.2035 -2.0545 36 1 4.4488 -2.5738 0.3501 37 1 4.2737 -2.6618 3.1675 38 1 2.6390 -2.8777 2.4970 39 1 3.0557 -5.7446 4.7713 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429448904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:00 Heat of formation + Delta-G solvation = -210.296283 kcal Electronic energy + Delta-G solvation = -30586.160028 eV Core-core repulsion = 25885.634717 eV Total energy + Delta-G solvation = -4700.525311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.47377 -48.86887 -48.85552 -41.86236 -40.34007 -38.49643 -36.60294 -36.20139 -34.30165 -31.83364 -31.03491 -29.73267 -28.96682 -28.00667 -25.73097 -24.56885 -23.25912 -22.86143 -21.41790 -20.09165 -20.02391 -19.43578 -18.78565 -18.40811 -17.56932 -17.49497 -16.99748 -16.75029 -16.61611 -16.30112 -16.01821 -15.95292 -15.64583 -15.58373 -15.42012 -15.23798 -15.06418 -14.92678 -14.75026 -14.55295 -14.44223 -14.04058 -13.93407 -13.59440 -13.19522 -12.98101 -12.88665 -12.73945 -12.58064 -12.22336 -12.07710 -11.99489 -11.46158 -11.11611 -10.80557 -10.41780 -9.95303 -9.86365 -9.23680 -8.28135 -6.44011 0.12089 0.37822 1.04690 1.44082 1.45241 1.59143 1.68634 2.08123 2.23187 2.39701 2.43620 2.52452 2.77339 2.94255 3.06967 3.35199 3.39811 3.82922 3.87025 3.96915 4.19344 4.34353 4.35049 4.37350 4.53443 4.69072 4.80829 5.07308 5.17506 5.22639 5.27374 5.44088 5.45241 5.49054 5.67020 5.73197 5.83922 6.12418 6.32938 6.64862 6.78804 7.20938 7.35864 8.84210 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.004402 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.172895 B = 6359.400347 C = 7431.451736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.336 6.336 3 C 0.145 3.855 4 C -0.212 4.212 5 C -0.064 4.064 6 C -0.155 4.155 7 C -0.088 4.088 8 C -0.172 4.172 9 C 0.126 3.874 10 N -0.808 5.808 11 C 0.518 3.482 12 O -0.568 6.568 13 N -0.681 5.681 14 C 0.270 3.730 15 C -0.553 4.553 16 H 0.080 0.920 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.983 3.017 20 H -0.255 1.255 21 H -0.279 1.279 22 H -0.276 1.276 23 C 0.471 3.529 24 F -0.177 7.177 25 F -0.170 7.170 26 F -0.158 7.158 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.155 0.845 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.374 0.626 35 H 0.369 0.631 36 H 0.411 0.589 37 H -0.013 1.013 38 H -0.005 1.005 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 16.740 -15.228 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.249 6.249 3 C 0.098 3.902 4 C -0.231 4.231 5 C -0.082 4.082 6 C -0.173 4.173 7 C -0.106 4.106 8 C -0.175 4.175 9 C 0.027 3.973 10 N -0.346 5.346 11 C 0.301 3.699 12 O -0.447 6.447 13 N -0.330 5.330 14 C 0.147 3.853 15 C -0.591 4.591 16 H 0.098 0.902 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.806 3.194 20 H -0.179 1.179 21 H -0.205 1.205 22 H -0.202 1.202 23 C 0.416 3.584 24 F -0.158 7.158 25 F -0.151 7.151 26 F -0.140 7.140 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.192 0.808 35 H 0.185 0.815 36 H 0.248 0.752 37 H 0.005 0.995 38 H 0.012 0.988 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.481 16.227 -14.068 21.619 hybrid contribution -0.286 -0.218 0.007 0.360 sum -2.767 16.009 -14.061 21.486 Atomic orbital electron populations 1.23313 0.76165 1.05206 1.02490 1.86040 1.23806 1.26987 1.88077 1.18843 0.90925 0.85713 0.94682 1.21551 1.01302 0.91713 1.08526 1.21460 0.94727 0.97838 0.94127 1.21360 0.94345 0.98497 1.03086 1.21387 1.00968 0.91464 0.96796 1.19175 0.91736 0.93918 1.12696 1.20539 0.89575 0.92955 0.94223 1.58813 1.28912 1.45561 1.01327 1.19887 0.79339 0.83298 0.87407 1.90661 1.45956 1.73413 1.34644 1.46105 1.61262 1.05882 1.19766 1.18610 0.93606 0.89601 0.83445 1.21589 1.43658 0.91165 1.02672 0.90173 1.26002 0.94119 1.04823 0.94248 1.70138 1.43676 1.35871 1.07119 0.85132 0.77978 0.77302 0.78951 1.17860 1.20483 1.20153 1.19826 0.89519 0.74966 0.74126 1.93205 1.95377 1.76572 1.50678 1.93235 1.78036 1.47808 1.96019 1.93173 1.93090 1.76460 1.51237 0.92554 0.89645 0.87620 0.82779 0.81862 0.82572 0.84922 0.80757 0.81455 0.75220 0.99482 0.98753 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.34 -10.00 7.37 -92.40 -0.68 -10.68 16 3 C 0.14 4.13 5.99 22.51 0.13 4.26 16 4 C -0.21 -4.60 9.04 22.37 0.20 -4.40 16 5 C -0.06 -1.14 10.04 22.25 0.22 -0.92 16 6 C -0.15 -3.08 10.04 22.28 0.22 -2.86 16 7 C -0.09 -2.27 8.14 22.26 0.18 -2.09 16 8 C -0.17 -5.19 4.36 -19.77 -0.09 -5.27 16 9 C 0.13 4.13 0.40 2.03 0.00 4.13 16 10 N -0.81 -21.29 8.05 -157.52 -1.27 -22.56 16 11 C 0.52 22.72 4.92 87.65 0.43 23.15 16 12 O -0.57 -29.43 15.81 -3.02 -0.05 -29.48 16 13 N -0.68 -31.51 5.34 -466.79 -2.49 -34.00 16 14 C 0.27 15.32 5.43 85.63 0.46 15.78 16 15 C -0.55 -31.00 9.28 25.60 0.24 -30.77 16 16 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 17 C 0.01 0.43 5.46 84.65 0.46 0.90 16 18 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 19 Si 0.98 43.10 29.54 68.60 2.03 45.13 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 23 C 0.47 15.02 2.02 71.98 0.15 15.17 16 24 F -0.18 -6.15 14.96 44.97 0.67 -5.48 16 25 F -0.17 -5.85 16.83 44.97 0.76 -5.09 16 26 F -0.16 -4.02 14.62 44.97 0.66 -3.36 16 27 H 0.06 1.15 7.66 -2.39 -0.02 1.14 16 28 H 0.09 1.18 7.66 -2.39 -0.02 1.17 16 29 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.13 3.33 4.64 -2.91 -0.01 3.31 16 34 H 0.37 9.80 7.27 -89.70 -0.65 9.15 16 35 H 0.37 7.58 8.44 -89.70 -0.76 6.82 16 36 H 0.41 17.17 7.68 -92.71 -0.71 16.46 16 37 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.13 338.13 2.68 -71.46 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.97 Total: 31.56 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 3.73 Total: 18.65 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -3.48 Total: -112.71 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.73 Total: -40.16 kcal Atomic # 9 Polarization: -16.02 SS G_CDS: 2.09 Total: -13.93 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -74.13 2.68 -71.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429448904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.841 kcal (2) G-P(sol) polarization free energy of solvation -74.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds