Wall clock time and date at job start Tue Mar 31 2020 16:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35493 * 126.97881 * 2 1 4 4 N 1.30518 * 107.30175 * 180.22451 * 3 2 1 5 5 N 1.28597 * 109.67626 * 359.78010 * 4 3 2 6 6 C 1.30518 * 109.67000 * 359.97438 * 5 4 3 7 7 C 1.50709 * 126.34190 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47121 * 90.03015 * 7 6 5 9 9 N 1.46498 * 109.46889 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99521 * 179.97438 * 9 8 7 11 11 O 1.21547 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.47869 * 119.99581 * 179.97438 * 10 9 8 13 13 C 1.39674 * 120.10307 * 359.72185 * 12 10 9 14 14 C 1.38035 * 120.03820 * 179.74328 * 13 12 10 15 15 C 1.38186 * 120.24202 * 0.56096 * 14 13 12 16 16 C 1.39182 * 120.20329 * 359.69358 * 15 14 13 17 17 S 1.76198 * 120.01759 * 180.02562 * 16 15 14 18 18 C 1.76192 * 100.00083 * 265.52546 * 17 16 15 19 19 H 1.08007 * 120.00332 * 5.12421 * 18 17 16 20 20 C 1.38732 * 120.00382 * 185.11912 * 18 17 16 21 21 N 1.31631 * 119.99440 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47114 * 90.00197 * 22 20 18 24 24 H 1.48501 * 109.47199 * 210.00079 * 22 20 18 25 25 H 1.48498 * 109.47100 * 330.00350 * 22 20 18 26 26 C 1.38873 * 119.95661 * 0.02647 * 16 15 14 27 27 H 1.09001 * 109.47132 * 270.15458 * 1 2 3 28 28 H 1.09003 * 109.47151 * 30.15094 * 1 2 3 29 29 H 1.09001 * 109.47454 * 150.15240 * 1 2 3 30 30 H 1.07998 * 126.34965 * 0.02562 * 3 2 1 31 31 H 1.09007 * 109.46465 * 210.02734 * 7 6 5 32 32 H 1.08999 * 109.47129 * 330.02441 * 7 6 5 33 33 H 1.08998 * 109.46688 * 299.99821 * 8 7 6 34 34 H 1.08998 * 109.46898 * 59.99424 * 8 7 6 35 35 H 0.96998 * 120.00336 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.97764 * 0.02562 * 13 12 10 37 37 H 1.07992 * 119.87977 * 180.25356 * 14 13 12 38 38 H 1.08003 * 119.89481 * 179.72238 * 15 14 13 39 39 H 0.96998 * 119.99141 * 180.02562 * 21 20 18 40 40 H 1.08001 * 120.11605 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6429 -0.0049 5 7 3.5090 -0.6430 -0.0033 6 6 2.2800 -1.0824 0.0033 7 6 1.8476 -2.5261 0.0066 8 6 1.7078 -3.0132 1.4503 9 7 1.2869 -4.4164 1.4535 10 6 1.0993 -5.0609 2.6222 11 8 1.2788 -4.4778 3.6734 12 6 0.6739 -6.4771 2.6255 13 6 0.4604 -7.1472 1.4187 14 6 0.0684 -8.4707 1.4233 15 6 -0.1256 -9.1350 2.6194 16 6 0.0792 -8.4755 3.8278 17 16 -0.1689 -9.3274 5.3500 18 6 -1.8346 -8.8653 5.6913 19 1 -2.3944 -8.2901 4.9686 20 6 -2.4272 -9.2402 6.8884 21 7 -1.7448 -9.9409 7.7693 22 14 -4.1932 -8.7509 7.2499 23 1 -5.1113 -9.8065 6.7516 24 1 -4.3724 -8.5904 8.7153 25 1 -4.5001 -7.4668 6.5701 26 6 0.4792 -7.1456 3.8329 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5115 30 1 1.9702 2.1170 0.0004 31 1 0.8884 -2.6192 -0.5028 32 1 2.5936 -3.1300 -0.5100 33 1 2.6670 -2.9200 1.9596 34 1 0.9619 -2.4092 1.9669 35 1 1.1433 -4.8817 0.6146 36 1 0.6064 -6.6308 0.4815 37 1 -0.0920 -8.9875 0.4887 38 1 -0.4366 -10.1693 2.6164 39 1 -2.1593 -10.2033 8.6061 40 1 0.6392 -6.6315 4.7691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431018480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:13 Heat of formation + Delta-G solvation = 66.281198 kcal Electronic energy + Delta-G solvation = -23997.444622 eV Core-core repulsion = 20325.814973 eV Total energy + Delta-G solvation = -3671.629649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.54071 -40.03522 -37.95240 -36.05470 -35.32746 -32.90424 -32.52853 -30.97891 -30.57173 -29.08188 -28.11144 -25.59422 -24.81533 -23.07188 -22.81240 -22.15212 -21.26659 -20.40549 -18.41113 -17.57724 -17.43158 -16.85584 -16.24123 -16.09977 -15.68157 -15.28330 -15.13949 -14.87364 -14.67601 -14.21200 -14.03321 -13.99678 -13.69534 -13.43008 -13.29538 -12.98540 -12.58743 -12.39894 -11.98533 -11.86707 -11.68214 -11.18671 -11.16738 -11.10842 -10.75025 -10.73710 -10.65889 -10.03543 -9.87639 -9.62744 -9.31786 -9.18783 -9.04177 -8.63371 -8.06245 -6.73531 -6.30746 -4.04802 1.11173 1.32598 1.62536 1.97948 2.46912 2.93211 2.99160 3.17430 3.20191 3.25922 3.43646 3.87229 4.02758 4.05145 4.13119 4.22945 4.32818 4.34575 4.47129 4.75102 4.79815 4.90026 4.97151 5.03109 5.05886 5.19092 5.27529 5.45192 5.50501 5.55385 5.68948 5.70861 5.83283 5.94044 6.17075 6.21384 6.35811 6.53420 6.59170 6.89377 7.14431 7.36450 7.55079 8.19324 8.30179 8.32851 9.14932 10.76006 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.002167 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.160974 B =12917.303560 C =13659.202324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.475 5.475 3 C 0.150 3.850 4 N -0.296 5.296 5 N -0.286 5.286 6 C 0.179 3.821 7 C -0.044 4.044 8 C 0.128 3.872 9 N -0.733 5.733 10 C 0.565 3.435 11 O -0.531 6.531 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.054 4.054 16 C -0.107 4.107 17 S -0.034 6.034 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.869 5.869 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.018 4.018 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.220 0.780 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.270 0.730 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 16.046 -20.435 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.166 5.166 3 C -0.137 4.137 4 N -0.135 5.135 5 N -0.126 5.126 6 C -0.089 4.089 7 C -0.084 4.084 8 C 0.003 3.997 9 N -0.387 5.387 10 C 0.354 3.646 11 O -0.407 6.407 12 C -0.160 4.160 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.075 4.075 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.040 4.040 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.236 0.764 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.236 0.764 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.667 15.722 -18.826 24.800 hybrid contribution -3.510 1.109 -0.936 3.798 sum 0.158 16.831 -19.761 25.958 Atomic orbital electron populations 1.22194 0.75041 1.05429 1.04762 1.46223 1.09377 1.06780 1.54237 1.26491 0.87168 0.94983 1.05062 1.74285 1.18100 1.03198 1.17937 1.74310 1.16881 1.03271 1.18154 1.24492 0.87452 0.91834 1.05114 1.20188 1.03407 0.86588 0.98256 1.21172 1.01672 0.82069 0.94823 1.45791 1.71618 1.12275 1.09056 1.18407 0.76458 0.86546 0.83180 1.90793 1.50538 1.68138 1.31259 1.19821 1.08090 0.93144 0.94925 1.21119 0.98725 0.95021 0.96026 1.21060 1.02251 0.94592 0.98175 1.21979 0.94055 1.00127 0.91385 1.22868 1.00777 0.96586 1.01496 1.83635 1.19094 1.61250 1.15991 1.22828 0.96178 1.41340 1.06385 0.90638 1.25012 0.99153 0.94690 0.94779 1.69990 1.36900 1.35194 1.08383 0.86115 0.82389 0.79054 0.77715 1.20162 1.20637 1.19610 1.21963 0.91456 0.93266 0.97283 0.89458 0.88699 0.88866 0.76385 0.89161 0.87244 0.90302 0.91474 0.76412 0.86493 0.85817 0.85036 0.92033 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.04 59.85 0.66 0.81 16 2 N -0.48 -3.09 3.15 -122.68 -0.39 -3.47 16 3 C 0.15 1.12 12.74 -89.95 -1.15 -0.02 16 4 N -0.30 -3.54 12.21 29.69 0.36 -3.18 16 5 N -0.29 -3.57 12.21 32.80 0.40 -3.17 16 6 C 0.18 1.58 7.28 -154.99 -1.13 0.45 16 7 C -0.04 -0.27 5.69 -27.88 -0.16 -0.43 16 8 C 0.13 1.17 5.66 -4.04 -0.02 1.15 16 9 N -0.73 -7.36 5.51 -61.25 -0.34 -7.70 16 10 C 0.57 8.63 7.77 -12.32 -0.10 8.54 16 11 O -0.53 -10.30 16.34 5.32 0.09 -10.22 16 12 C -0.15 -2.48 5.87 -104.99 -0.62 -3.10 16 13 C -0.09 -1.13 9.54 -39.12 -0.37 -1.51 16 14 C -0.14 -1.90 10.02 -39.67 -0.40 -2.30 16 15 C -0.05 -0.94 9.79 -39.25 -0.38 -1.32 16 16 C -0.11 -2.23 5.45 -39.00 -0.21 -2.44 16 17 S -0.03 -0.87 21.41 -107.50 -2.30 -3.18 16 18 C -0.52 -14.50 9.46 30.91 0.29 -14.21 16 19 H 0.08 2.08 7.79 -52.48 -0.41 1.67 16 20 C 0.07 2.02 5.49 -17.46 -0.10 1.93 16 21 N -0.87 -25.27 13.22 55.49 0.73 -24.54 16 22 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 27 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.09 0.10 7.19 -51.93 -0.37 -0.27 16 30 H 0.22 0.63 8.06 -52.49 -0.42 0.20 16 31 H 0.09 0.30 7.21 -51.92 -0.37 -0.08 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 2.70 6.50 -40.82 -0.27 2.43 16 36 H 0.12 0.95 6.40 -52.49 -0.34 0.61 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -37.80 366.01 -9.67 -47.47 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.68 Total: -0.54 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -4.04 Total: -13.17 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.77 Total: -42.06 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.80 -9.67 -47.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431018480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.753 kcal (2) G-P(sol) polarization free energy of solvation -37.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds