Wall clock time and date at job start Tue Mar 31 2020 16:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35493 * 126.97881 * 2 1 4 4 N 1.30518 * 107.30175 * 180.22451 * 3 2 1 5 5 N 1.28597 * 109.67626 * 359.78010 * 4 3 2 6 6 C 1.30518 * 109.67000 * 359.97438 * 5 4 3 7 7 C 1.50709 * 126.34190 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47121 * 90.03015 * 7 6 5 9 9 N 1.46498 * 109.46889 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99521 * 179.97438 * 9 8 7 11 11 O 1.21547 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.47869 * 119.99581 * 179.97438 * 10 9 8 13 13 C 1.39674 * 120.10307 * 359.72185 * 12 10 9 14 14 C 1.38035 * 120.03820 * 179.74328 * 13 12 10 15 15 C 1.38186 * 120.24202 * 0.56096 * 14 13 12 16 16 C 1.39182 * 120.20329 * 359.69358 * 15 14 13 17 17 S 1.76198 * 120.01759 * 180.02562 * 16 15 14 18 18 C 1.76192 * 100.00083 * 265.52546 * 17 16 15 19 19 H 1.08007 * 120.00332 * 5.12421 * 18 17 16 20 20 C 1.38732 * 120.00382 * 185.11912 * 18 17 16 21 21 N 1.31631 * 119.99440 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47114 * 90.00197 * 22 20 18 24 24 H 1.48501 * 109.47199 * 210.00079 * 22 20 18 25 25 H 1.48498 * 109.47100 * 330.00350 * 22 20 18 26 26 C 1.38873 * 119.95661 * 0.02647 * 16 15 14 27 27 H 1.09001 * 109.47132 * 270.15458 * 1 2 3 28 28 H 1.09003 * 109.47151 * 30.15094 * 1 2 3 29 29 H 1.09001 * 109.47454 * 150.15240 * 1 2 3 30 30 H 1.07998 * 126.34965 * 0.02562 * 3 2 1 31 31 H 1.09007 * 109.46465 * 210.02734 * 7 6 5 32 32 H 1.08999 * 109.47129 * 330.02441 * 7 6 5 33 33 H 1.08998 * 109.46688 * 299.99821 * 8 7 6 34 34 H 1.08998 * 109.46898 * 59.99424 * 8 7 6 35 35 H 0.96998 * 120.00336 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.97764 * 0.02562 * 13 12 10 37 37 H 1.07992 * 119.87977 * 180.25356 * 14 13 12 38 38 H 1.08003 * 119.89481 * 179.72238 * 15 14 13 39 39 H 0.96998 * 119.99141 * 180.02562 * 21 20 18 40 40 H 1.08001 * 120.11605 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6429 -0.0049 5 7 3.5090 -0.6430 -0.0033 6 6 2.2800 -1.0824 0.0033 7 6 1.8476 -2.5261 0.0066 8 6 1.7078 -3.0132 1.4503 9 7 1.2869 -4.4164 1.4535 10 6 1.0993 -5.0609 2.6222 11 8 1.2788 -4.4778 3.6734 12 6 0.6739 -6.4771 2.6255 13 6 0.4604 -7.1472 1.4187 14 6 0.0684 -8.4707 1.4233 15 6 -0.1256 -9.1350 2.6194 16 6 0.0792 -8.4755 3.8278 17 16 -0.1689 -9.3274 5.3500 18 6 -1.8346 -8.8653 5.6913 19 1 -2.3944 -8.2901 4.9686 20 6 -2.4272 -9.2402 6.8884 21 7 -1.7448 -9.9409 7.7693 22 14 -4.1932 -8.7509 7.2499 23 1 -5.1113 -9.8065 6.7516 24 1 -4.3724 -8.5904 8.7153 25 1 -4.5001 -7.4668 6.5701 26 6 0.4792 -7.1456 3.8329 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5115 30 1 1.9702 2.1170 0.0004 31 1 0.8884 -2.6192 -0.5028 32 1 2.5936 -3.1300 -0.5100 33 1 2.6670 -2.9200 1.9596 34 1 0.9619 -2.4092 1.9669 35 1 1.1433 -4.8817 0.6146 36 1 0.6064 -6.6308 0.4815 37 1 -0.0920 -8.9875 0.4887 38 1 -0.4366 -10.1693 2.6164 39 1 -2.1593 -10.2033 8.6061 40 1 0.6392 -6.6315 4.7691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431018480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:12 Heat of formation + Delta-G solvation = 40.774936 kcal Electronic energy + Delta-G solvation = -23998.550656 eV Core-core repulsion = 20325.814973 eV Total energy + Delta-G solvation = -3672.735683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.13029 -41.23965 -39.20876 -36.91437 -35.91723 -34.65267 -33.75858 -32.14642 -31.86011 -29.84798 -28.42243 -27.74559 -25.75005 -24.18042 -23.41626 -23.36078 -22.00830 -21.44058 -20.00467 -19.01768 -18.05627 -17.55451 -17.26568 -16.93499 -16.82418 -16.79993 -16.52316 -16.04841 -15.72767 -15.30878 -14.99838 -14.88818 -14.64117 -14.53628 -14.30094 -13.81508 -13.57187 -13.29234 -13.19106 -13.03720 -12.96399 -12.67767 -12.64747 -12.52954 -12.38716 -11.74780 -11.36952 -11.27600 -11.17346 -11.11950 -10.74615 -10.35214 -10.31075 -9.89527 -9.68425 -8.80713 -8.39176 -6.19362 -0.17137 0.27485 0.77966 1.29332 1.37488 1.46264 1.55242 1.65457 1.78203 1.80926 2.06032 2.24782 2.81750 2.93778 3.29964 3.42339 3.64255 3.73186 3.78218 3.88672 3.90459 3.96775 4.07126 4.29653 4.33303 4.37648 4.43707 4.50596 4.66500 4.70899 4.75961 4.86895 4.94316 5.00333 5.15644 5.22800 5.24310 5.34545 5.38630 5.53001 5.88682 5.93134 6.15612 6.43848 7.00919 7.11529 7.69715 8.67885 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.002167 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.160974 B =12917.303560 C =13659.202324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.471 5.471 3 C 0.162 3.838 4 N -0.353 5.353 5 N -0.339 5.339 6 C 0.175 3.825 7 C -0.032 4.032 8 C 0.132 3.868 9 N -0.702 5.702 10 C 0.564 3.436 11 O -0.584 6.584 12 C -0.157 4.157 13 C -0.059 4.059 14 C -0.120 4.120 15 C -0.063 4.063 16 C -0.130 4.130 17 S -0.100 6.100 18 C -0.534 4.534 19 H 0.068 0.932 20 C 0.017 3.983 21 N -0.907 5.907 22 Si 0.994 3.006 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.267 1.267 26 C -0.047 4.047 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.259 0.741 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.422 0.578 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.134 0.866 39 H 0.273 0.727 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 17.196 -24.919 30.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.161 5.161 3 C -0.127 4.127 4 N -0.192 5.192 5 N -0.179 5.179 6 C -0.095 4.095 7 C -0.071 4.071 8 C 0.007 3.993 9 N -0.356 5.356 10 C 0.352 3.648 11 O -0.465 6.465 12 C -0.162 4.162 13 C -0.077 4.077 14 C -0.140 4.140 15 C -0.084 4.084 16 C -0.242 4.242 17 S 0.135 5.865 18 C -0.681 4.681 19 H 0.087 0.913 20 C -0.188 4.188 21 N -0.543 5.543 22 Si 0.815 3.185 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.192 1.192 26 C -0.069 4.069 27 H 0.107 0.893 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.275 0.725 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.262 0.738 36 H 0.198 0.802 37 H 0.195 0.805 38 H 0.152 0.848 39 H 0.083 0.917 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.410 16.866 -23.381 28.863 hybrid contribution -2.751 0.856 0.287 2.896 sum -1.341 17.722 -23.093 29.141 Atomic orbital electron populations 1.22575 0.72278 1.07731 1.05555 1.46477 1.10879 1.05756 1.53021 1.27239 0.86262 0.96718 1.02436 1.74160 1.20893 1.03464 1.20669 1.74179 1.19418 1.03965 1.20341 1.24851 0.87087 0.93285 1.04251 1.20207 1.05856 0.85007 0.96047 1.21128 0.99975 0.81261 0.96967 1.45474 1.69323 1.12495 1.08282 1.18388 0.76256 0.86333 0.83807 1.90779 1.53057 1.69078 1.33572 1.19917 1.07803 0.93660 0.94780 1.21763 0.94601 0.94629 0.96732 1.21580 0.99392 0.94709 0.98282 1.22090 0.94269 1.00516 0.91513 1.22490 1.04667 0.97049 0.99948 1.83533 1.19043 1.62972 1.21001 1.23057 0.97173 1.41197 1.06691 0.91332 1.26048 1.03912 0.94441 0.94413 1.70122 1.38952 1.36366 1.08894 0.85022 0.76684 0.78997 0.77762 1.18610 1.19880 1.19167 1.21625 0.94152 0.93274 0.97805 0.89337 0.86095 0.87052 0.72504 0.85040 0.86231 0.93227 0.91890 0.73819 0.80156 0.80508 0.84840 0.91745 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 11.04 127.77 1.41 1.44 16 2 N -0.47 -4.89 3.15 -542.06 -1.71 -6.60 16 3 C 0.16 2.14 12.74 180.11 2.30 4.43 16 4 N -0.35 -8.44 12.21 -59.99 -0.73 -9.17 16 5 N -0.34 -8.44 12.21 -50.15 -0.61 -9.05 16 6 C 0.17 2.77 7.28 137.98 1.01 3.77 16 7 C -0.03 -0.27 5.69 29.85 0.17 -0.11 16 8 C 0.13 2.14 5.66 86.38 0.49 2.63 16 9 N -0.70 -11.69 5.51 -465.97 -2.57 -14.26 16 10 C 0.56 16.58 7.77 86.79 0.67 17.25 16 11 O -0.58 -23.52 16.34 -3.86 -0.06 -23.59 16 12 C -0.16 -4.77 5.87 -20.10 -0.12 -4.89 16 13 C -0.06 -1.17 9.54 22.57 0.22 -0.95 16 14 C -0.12 -2.62 10.02 22.21 0.22 -2.40 16 15 C -0.06 -2.10 9.79 22.48 0.22 -1.88 16 16 C -0.13 -5.66 5.45 22.65 0.12 -5.54 16 17 S -0.10 -5.48 21.41 -56.49 -1.21 -6.69 16 18 C -0.53 -31.19 9.46 67.94 0.64 -30.55 16 19 H 0.07 3.94 7.79 -2.91 -0.02 3.91 16 20 C 0.02 0.97 5.49 84.84 0.47 1.44 16 21 N -0.91 -54.83 13.22 21.64 0.29 -54.54 16 22 Si 0.99 44.27 29.55 68.60 2.03 46.29 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C -0.05 -1.94 9.34 22.70 0.21 -1.73 16 27 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.12 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.11 -0.32 7.19 -2.39 -0.02 -0.34 16 30 H 0.26 0.74 8.06 -2.91 -0.02 0.72 16 31 H 0.13 0.08 7.21 -2.38 -0.02 0.07 16 32 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.42 3.12 6.50 -92.71 -0.60 2.52 16 36 H 0.18 1.33 6.40 -2.91 -0.02 1.31 16 37 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.10 4.81 7.65 -2.91 -0.02 4.78 16 Total: -1.00 -94.32 366.01 3.93 -90.38 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.48 Total: 4.30 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 8.03 Total: -17.08 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -5.33 Total: -93.62 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.59 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.21 Total: -6.69 kcal Total: -94.32 3.93 -90.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431018480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.160 kcal (2) G-P(sol) polarization free energy of solvation -94.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds