Wall clock time and date at job start Tue Mar 31 2020 16:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81005 * 109.47079 * 2 1 4 4 C 1.76197 * 100.00090 * 180.02562 * 3 2 1 5 5 C 1.39661 * 120.57372 * 0.22782 * 4 3 2 6 6 C 1.38170 * 118.42035 * 180.26722 * 5 4 3 7 7 C 1.38854 * 119.49138 * 359.75006 * 6 5 4 8 8 N 1.31343 * 121.14083 * 0.02562 * 7 6 5 9 9 C 1.32901 * 121.71891 * 359.97438 * 8 7 6 10 10 C 1.47636 * 119.81145 * 179.97438 * 9 8 7 11 11 O 1.21602 * 119.99390 * 179.97438 * 10 9 8 12 12 N 1.34763 * 120.00330 * 359.97438 * 10 9 8 13 13 C 1.40073 * 120.00213 * 179.97438 * 12 10 9 14 14 C 1.40427 * 125.97815 * 359.97438 * 13 12 10 15 15 C 1.35224 * 107.86759 * 179.77061 * 14 13 12 16 16 N 1.34966 * 107.86971 * 0.36573 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.89501 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31241 * 125.97693 * 179.97438 * 13 12 10 27 27 H 1.09004 * 109.47289 * 59.99782 * 1 2 3 28 28 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47394 * 299.99743 * 1 2 3 30 30 H 1.09004 * 109.46963 * 240.00399 * 2 1 3 31 31 H 1.08990 * 109.47260 * 120.00118 * 2 1 3 32 32 H 1.08004 * 120.79125 * 0.02562 * 5 4 3 33 33 H 1.08001 * 120.24876 * 179.72979 * 6 5 4 34 34 H 1.08002 * 119.42945 * 180.02562 * 7 6 5 35 35 H 0.97003 * 119.99992 * 0.02562 * 12 10 9 36 36 H 1.08001 * 126.06258 * 0.02562 * 14 13 12 37 37 H 1.08005 * 126.06805 * 180.24445 * 15 14 13 38 38 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 39 39 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 40 40 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 6 4.3741 0.1137 -0.0060 6 6 5.7446 -0.0623 -0.0007 7 6 6.5765 1.0494 0.0042 8 7 6.0834 2.2668 0.0045 9 6 4.7733 2.4900 -0.0004 10 6 4.2649 3.8761 0.0006 11 8 3.0668 4.0841 -0.0043 12 7 5.1285 4.9106 0.0071 13 6 4.6461 6.2257 0.0076 14 6 3.2951 6.6088 0.0013 15 6 3.2471 7.9602 0.0093 16 7 4.5161 8.4197 0.0121 17 6 4.9217 9.8274 0.0183 18 6 5.8375 10.0812 1.1880 19 1 6.0922 9.2745 1.8593 20 6 6.3501 11.3432 1.4012 21 7 6.0442 12.3244 0.5806 22 14 7.4857 11.6577 2.8506 23 1 7.9016 13.0832 2.8535 24 1 6.7716 11.3477 4.1153 25 1 8.6867 10.7919 2.7353 26 7 5.3776 7.3152 0.0140 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.7076 -0.7361 -0.0100 33 1 6.1654 -1.0569 -0.0001 34 1 7.6476 0.9107 0.0079 35 1 6.0842 4.7446 0.0107 36 1 2.4453 5.9424 -0.0044 37 1 2.3520 8.5647 0.0110 38 1 4.0381 10.4597 0.1049 39 1 5.4447 10.0590 -0.9095 40 1 5.4547 12.1612 -0.1722 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449888512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:51 Heat of formation + Delta-G solvation = 87.418292 kcal Electronic energy + Delta-G solvation = -24566.433385 eV Core-core repulsion = 20895.720310 eV Total energy + Delta-G solvation = -3670.713075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02834 -40.34426 -38.86323 -34.94836 -33.81778 -33.57431 -32.63781 -31.91462 -30.70953 -29.36675 -26.56355 -25.41791 -24.11169 -23.89839 -22.92126 -21.65448 -20.54316 -19.69065 -18.22039 -17.58493 -17.16768 -16.97116 -16.39625 -15.85064 -15.64923 -15.24605 -15.15325 -14.97797 -14.49655 -14.24465 -13.82172 -13.77946 -13.69123 -13.18096 -13.03300 -12.58542 -12.41411 -12.23093 -11.99838 -11.96297 -11.84796 -11.15034 -10.91876 -10.81582 -10.77567 -10.44911 -10.13944 -10.10592 -9.94421 -9.93583 -9.37568 -8.98073 -8.55850 -8.19908 -7.76044 -7.46378 -6.55843 -4.29665 0.21105 0.68357 1.24184 2.07072 2.30710 2.66769 2.84062 3.36827 3.39983 3.42051 3.59305 3.63538 3.78665 4.00378 4.29526 4.41044 4.43981 4.47349 4.47915 4.58463 4.87514 4.97342 5.01429 5.17947 5.29317 5.31787 5.37701 5.49128 5.54514 5.68350 5.75344 6.05453 6.18976 6.41786 6.51722 6.59705 6.77313 7.29316 7.35653 7.52293 7.72832 7.85216 8.13756 8.36892 8.56093 8.64413 9.38391 10.81763 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.002498 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.475579 B =11208.241605 C =12240.143115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.178 4.178 3 S 0.036 5.964 4 C -0.099 4.099 5 C -0.102 4.102 6 C -0.126 4.126 7 C 0.089 3.911 8 N -0.437 5.437 9 C 0.088 3.912 10 C 0.572 3.428 11 O -0.488 6.488 12 N -0.607 5.607 13 C 0.257 3.743 14 C -0.283 4.283 15 C 0.051 3.949 16 N -0.316 5.316 17 C 0.249 3.751 18 C -0.607 4.607 19 H 0.064 0.936 20 C 0.023 3.977 21 N -0.905 5.905 22 Si 1.077 2.923 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.285 1.285 26 N -0.297 5.297 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.421 0.579 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -28.903 -2.220 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.326 4.326 3 S 0.283 5.717 4 C -0.216 4.216 5 C -0.135 4.135 6 C -0.148 4.148 7 C -0.075 4.075 8 N -0.148 5.148 9 C -0.057 4.057 10 C 0.357 3.643 11 O -0.362 6.362 12 N -0.254 5.254 13 C 0.004 3.996 14 C -0.314 4.314 15 C -0.099 4.099 16 N -0.098 5.098 17 C 0.131 3.869 18 C -0.646 4.646 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.541 5.541 22 Si 0.904 3.096 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.211 1.211 26 N -0.128 5.128 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.184 0.816 35 H 0.259 0.741 36 H 0.180 0.820 37 H 0.186 0.814 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.520 -25.184 -1.463 25.823 hybrid contribution -0.797 -3.616 -0.789 3.786 sum -6.317 -28.800 -2.252 29.571 Atomic orbital electron populations 1.21438 0.91828 1.02655 1.03386 1.24133 1.01489 1.01892 1.05061 1.87391 0.92443 1.03877 1.88035 1.23155 1.00866 0.96076 1.01516 1.21622 0.96495 0.95192 1.00143 1.22283 0.93639 1.01055 0.97786 1.22833 1.00922 0.86784 0.97003 1.67584 1.12647 1.25638 1.08968 1.20565 0.88924 0.92561 1.03656 1.17566 0.85814 0.83265 0.77672 1.90669 1.14374 1.82678 1.48453 1.42114 1.11078 1.01653 1.70577 1.19071 0.92407 0.84467 1.03627 1.21537 0.96135 0.94078 1.19667 1.22555 0.89737 0.95044 1.02543 1.48817 1.02434 1.06640 1.51922 1.19769 0.97192 0.70645 0.99294 1.22106 1.31774 0.98601 1.12075 0.91821 1.25922 0.98329 0.91714 1.02225 1.70852 1.34364 1.33955 1.14880 0.83422 0.75708 0.76219 0.74295 1.20536 1.21238 1.21112 1.77391 1.16657 0.91184 1.27572 0.91545 0.91227 0.91524 0.89704 0.89693 0.83803 0.83811 0.81572 0.74130 0.81987 0.81425 0.93580 0.94725 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 9.92 37.16 0.37 -0.45 16 2 C -0.18 -1.22 4.90 37.16 0.18 -1.03 16 3 S 0.04 0.40 18.97 -107.50 -2.04 -1.64 16 4 C -0.10 -1.11 6.17 -38.31 -0.24 -1.35 16 5 C -0.10 -0.80 9.27 -39.08 -0.36 -1.17 16 6 C -0.13 -0.82 10.10 -39.38 -0.40 -1.22 16 7 C 0.09 0.74 11.17 -17.53 -0.20 0.55 16 8 N -0.44 -5.26 9.53 -9.66 -0.09 -5.35 16 9 C 0.09 1.19 6.76 -82.83 -0.56 0.63 16 10 C 0.57 9.36 7.75 -12.43 -0.10 9.27 16 11 O -0.49 -8.58 10.87 5.28 0.06 -8.53 16 12 N -0.61 -10.70 5.43 -12.05 -0.07 -10.77 16 13 C 0.26 5.44 8.11 -154.45 -1.25 4.18 16 14 C -0.28 -5.72 9.60 -39.83 -0.38 -6.11 16 15 C 0.05 1.04 11.43 -17.25 -0.20 0.84 16 16 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 17 C 0.25 6.40 5.57 -5.19 -0.03 6.38 16 18 C -0.61 -17.34 9.24 -34.44 -0.32 -17.66 16 19 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 20 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 21 N -0.91 -26.61 13.65 55.43 0.76 -25.85 16 22 Si 1.08 25.27 29.90 -169.99 -5.08 20.19 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 N -0.30 -7.15 12.42 31.43 0.39 -6.75 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.49 7.56 -51.91 -0.39 0.09 16 31 H 0.08 0.49 7.58 -51.92 -0.39 0.10 16 32 H 0.14 0.75 5.66 -52.48 -0.30 0.45 16 33 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.42 6.78 8.15 -40.82 -0.33 6.44 16 36 H 0.16 3.11 5.91 -52.49 -0.31 2.80 16 37 H 0.17 2.77 8.06 -52.48 -0.42 2.34 16 38 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 39 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 40 H 0.27 7.67 7.22 -40.82 -0.29 7.37 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -34.17 355.66 -9.11 -43.28 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.59 Total: 4.44 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.57 Total: -6.60 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.76 Total: -56.51 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.06 Total: -8.53 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.19 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.04 Total: -1.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.17 -9.11 -43.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449888512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.701 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds