Wall clock time and date at job start Tue Mar 31 2020 16:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81005 * 109.47079 * 2 1 4 4 C 1.76197 * 100.00090 * 180.02562 * 3 2 1 5 5 C 1.39661 * 120.57372 * 0.22782 * 4 3 2 6 6 C 1.38170 * 118.42035 * 180.26722 * 5 4 3 7 7 C 1.38854 * 119.49138 * 359.75006 * 6 5 4 8 8 N 1.31343 * 121.14083 * 0.02562 * 7 6 5 9 9 C 1.32901 * 121.71891 * 359.97438 * 8 7 6 10 10 C 1.47636 * 119.81145 * 179.97438 * 9 8 7 11 11 O 1.21602 * 119.99390 * 179.97438 * 10 9 8 12 12 N 1.34763 * 120.00330 * 359.97438 * 10 9 8 13 13 C 1.40073 * 120.00213 * 179.97438 * 12 10 9 14 14 C 1.40427 * 125.97815 * 359.97438 * 13 12 10 15 15 C 1.35224 * 107.86759 * 179.77061 * 14 13 12 16 16 N 1.34966 * 107.86971 * 0.36573 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.89501 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31241 * 125.97693 * 179.97438 * 13 12 10 27 27 H 1.09004 * 109.47289 * 59.99782 * 1 2 3 28 28 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47394 * 299.99743 * 1 2 3 30 30 H 1.09004 * 109.46963 * 240.00399 * 2 1 3 31 31 H 1.08990 * 109.47260 * 120.00118 * 2 1 3 32 32 H 1.08004 * 120.79125 * 0.02562 * 5 4 3 33 33 H 1.08001 * 120.24876 * 179.72979 * 6 5 4 34 34 H 1.08002 * 119.42945 * 180.02562 * 7 6 5 35 35 H 0.97003 * 119.99992 * 0.02562 * 12 10 9 36 36 H 1.08001 * 126.06258 * 0.02562 * 14 13 12 37 37 H 1.08005 * 126.06805 * 180.24445 * 15 14 13 38 38 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 39 39 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 40 40 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 6 4.3741 0.1137 -0.0060 6 6 5.7446 -0.0623 -0.0007 7 6 6.5765 1.0494 0.0042 8 7 6.0834 2.2668 0.0045 9 6 4.7733 2.4900 -0.0004 10 6 4.2649 3.8761 0.0006 11 8 3.0668 4.0841 -0.0043 12 7 5.1285 4.9106 0.0071 13 6 4.6461 6.2257 0.0076 14 6 3.2951 6.6088 0.0013 15 6 3.2471 7.9602 0.0093 16 7 4.5161 8.4197 0.0121 17 6 4.9217 9.8274 0.0183 18 6 5.8375 10.0812 1.1880 19 1 6.0922 9.2745 1.8593 20 6 6.3501 11.3432 1.4012 21 7 6.0442 12.3244 0.5806 22 14 7.4857 11.6577 2.8506 23 1 7.9016 13.0832 2.8535 24 1 6.7716 11.3477 4.1153 25 1 8.6867 10.7919 2.7353 26 7 5.3776 7.3152 0.0140 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.7076 -0.7361 -0.0100 33 1 6.1654 -1.0569 -0.0001 34 1 7.6476 0.9107 0.0079 35 1 6.0842 4.7446 0.0107 36 1 2.4453 5.9424 -0.0044 37 1 2.3520 8.5647 0.0110 38 1 4.0381 10.4597 0.1049 39 1 5.4447 10.0590 -0.9095 40 1 5.4547 12.1612 -0.1722 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449888512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:50 Heat of formation + Delta-G solvation = 65.660925 kcal Electronic energy + Delta-G solvation = -24567.376856 eV Core-core repulsion = 20895.720310 eV Total energy + Delta-G solvation = -3671.656546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.41207 -41.49727 -40.02319 -36.52088 -35.60950 -34.32402 -33.34337 -32.91961 -32.25096 -31.05996 -28.35110 -26.50786 -25.13995 -24.77850 -24.35161 -22.88980 -22.10477 -21.13095 -19.34594 -19.18665 -18.41927 -18.23469 -17.48487 -16.89809 -16.70830 -16.62795 -16.05656 -15.87745 -15.70518 -15.59376 -15.38589 -15.03512 -14.74628 -14.50558 -14.12872 -13.94235 -13.75699 -13.65835 -13.24963 -13.10512 -12.62923 -12.55923 -12.48915 -12.10109 -11.95821 -11.94997 -11.56591 -11.50408 -11.02422 -10.84643 -10.70482 -10.62769 -10.34942 -9.88291 -9.27009 -8.79679 -8.53191 -6.56863 -0.60615 0.03202 0.49651 0.90806 1.17601 1.41373 1.46222 1.50232 1.56767 1.78595 2.09337 2.18658 2.47938 2.70370 2.98970 3.00092 3.59878 3.73315 3.83480 3.88395 4.00847 4.05137 4.11048 4.21682 4.42227 4.51299 4.54261 4.66123 4.73120 4.78844 4.79694 4.86048 4.89700 4.95765 5.04740 5.23198 5.47400 5.53723 5.76131 5.90042 6.06681 6.25163 6.40329 6.61615 6.87142 6.93583 7.18491 8.57258 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.002498 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.475579 B =11208.241605 C =12240.143115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 S -0.041 6.041 4 C -0.098 4.098 5 C -0.101 4.101 6 C -0.100 4.100 7 C 0.083 3.917 8 N -0.464 5.464 9 C 0.052 3.948 10 C 0.568 3.432 11 O -0.506 6.506 12 N -0.611 5.611 13 C 0.266 3.734 14 C -0.288 4.288 15 C 0.058 3.942 16 N -0.342 5.342 17 C 0.259 3.741 18 C -0.622 4.622 19 H 0.043 0.957 20 C -0.019 4.019 21 N -0.922 5.922 22 Si 1.120 2.880 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.276 1.276 26 N -0.345 5.345 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.176 0.824 33 H 0.193 0.807 34 H 0.199 0.801 35 H 0.425 0.575 36 H 0.173 0.827 37 H 0.206 0.794 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.281 -32.664 -1.633 33.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.304 4.304 3 S 0.207 5.793 4 C -0.216 4.216 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.082 4.082 8 N -0.176 5.176 9 C -0.091 4.091 10 C 0.355 3.645 11 O -0.381 6.381 12 N -0.259 5.259 13 C 0.011 3.989 14 C -0.318 4.318 15 C -0.090 4.090 16 N -0.124 5.124 17 C 0.140 3.860 18 C -0.660 4.660 19 H 0.062 0.938 20 C -0.218 4.218 21 N -0.558 5.558 22 Si 0.940 3.060 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.202 1.202 26 N -0.176 5.176 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.194 0.806 33 H 0.210 0.790 34 H 0.215 0.785 35 H 0.263 0.737 36 H 0.190 0.810 37 H 0.222 0.778 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.376 -28.976 -0.892 29.484 hybrid contribution -0.892 -2.766 -1.020 3.080 sum -6.268 -31.742 -1.913 32.411 Atomic orbital electron populations 1.21486 0.91354 1.03935 1.02669 1.24129 1.01602 0.97954 1.06685 1.87566 0.94185 1.09267 1.88324 1.23216 0.99823 0.96996 1.01538 1.22091 0.97803 0.94419 0.98958 1.22829 0.92733 1.02597 0.93972 1.23540 1.02823 0.86156 0.95669 1.67511 1.12051 1.27987 1.10007 1.20111 0.90148 0.91100 1.07769 1.18206 0.85530 0.84270 0.76469 1.90650 1.15063 1.83539 1.48841 1.42295 1.11663 1.00638 1.71308 1.19425 0.92749 0.85334 1.01374 1.21741 0.96130 0.94244 1.19723 1.23202 0.89688 0.95558 1.00551 1.48614 1.03564 1.05975 1.54198 1.19447 0.96900 0.72223 0.97427 1.22281 1.32732 0.98282 1.12736 0.93828 1.27283 0.99089 0.91475 1.03982 1.70945 1.35082 1.34403 1.15356 0.82887 0.74479 0.76563 0.72046 1.19776 1.19632 1.20173 1.77300 1.18002 0.92024 1.30239 0.92307 0.88701 0.92358 0.87910 0.87980 0.80646 0.79021 0.78469 0.73678 0.81002 0.77764 0.92559 0.96514 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.92 71.98 0.71 -0.66 16 2 C -0.16 -1.72 4.90 71.98 0.35 -1.37 16 3 S -0.04 -0.90 18.97 -56.49 -1.07 -1.97 16 4 C -0.10 -2.10 6.17 23.09 0.14 -1.96 16 5 C -0.10 -1.22 9.27 22.60 0.21 -1.01 16 6 C -0.10 -0.83 10.10 22.40 0.23 -0.60 16 7 C 0.08 1.13 11.17 84.91 0.95 2.08 16 8 N -0.46 -10.81 9.53 -184.48 -1.76 -12.57 16 9 C 0.05 1.40 6.76 41.94 0.28 1.68 16 10 C 0.57 19.37 7.75 86.73 0.67 20.04 16 11 O -0.51 -18.58 10.87 -4.04 -0.04 -18.62 16 12 N -0.61 -22.56 5.43 -310.30 -1.69 -24.24 16 13 C 0.27 11.66 8.11 133.35 1.08 12.74 16 14 C -0.29 -11.90 9.60 22.11 0.21 -11.69 16 15 C 0.06 2.40 11.43 83.52 0.95 3.35 16 16 N -0.34 -16.85 3.67 -351.85 -1.29 -18.14 16 17 C 0.26 13.77 5.57 85.64 0.48 14.25 16 18 C -0.62 -36.49 9.24 25.60 0.24 -36.25 16 19 H 0.04 2.69 7.81 -2.91 -0.02 2.66 16 20 C -0.02 -1.06 5.46 84.65 0.46 -0.60 16 21 N -0.92 -54.84 13.65 21.45 0.29 -54.54 16 22 Si 1.12 50.94 29.90 68.60 2.05 52.99 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 26 N -0.34 -17.30 12.42 -54.48 -0.68 -17.97 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.79 7.56 -2.39 -0.02 0.77 16 31 H 0.10 0.80 7.58 -2.40 -0.02 0.79 16 32 H 0.18 0.93 5.66 -2.91 -0.02 0.91 16 33 H 0.19 -0.20 8.06 -2.91 -0.02 -0.22 16 34 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.43 14.48 8.15 -92.71 -0.76 13.73 16 36 H 0.17 6.75 5.91 -2.91 -0.02 6.74 16 37 H 0.21 6.56 8.06 -2.91 -0.02 6.53 16 38 H 0.06 2.84 7.94 -2.39 -0.02 2.82 16 39 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 40 H 0.26 15.34 7.22 -92.71 -0.67 14.67 16 Total: -1.00 -78.45 355.66 3.23 -75.23 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.44 Total: 19.83 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 6.97 Total: 0.02 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -5.12 Total: -127.47 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.04 Total: -18.62 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 52.99 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -1.07 Total: -1.97 kcal Total: -78.45 3.23 -75.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449888512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.887 kcal (2) G-P(sol) polarization free energy of solvation -78.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds