Wall clock time and date at job start Tue Mar 31 2020 16:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00155 * 2 1 4 4 C 1.52998 * 109.47051 * 270.00214 * 3 2 1 5 5 H 1.08998 * 109.47176 * 305.00169 * 4 3 2 6 6 O 1.42904 * 109.47207 * 65.00014 * 4 3 2 7 7 C 1.53003 * 109.47081 * 185.00034 * 4 3 2 8 8 F 1.39898 * 109.47413 * 60.00172 * 7 4 3 9 9 F 1.39898 * 109.46969 * 180.02562 * 7 4 3 10 10 F 1.39898 * 109.46904 * 300.00010 * 7 4 3 11 11 C 1.34781 * 120.00003 * 180.02562 * 2 1 3 12 12 O 1.21590 * 120.00128 * 179.97438 * 11 2 1 13 13 N 1.34775 * 119.99727 * 0.26849 * 11 2 1 14 14 C 1.39958 * 119.99630 * 174.53570 * 13 11 2 15 15 C 1.39292 * 119.94527 * 145.79544 * 14 13 11 16 16 C 1.38486 * 120.43181 * 180.02562 * 15 14 13 17 17 C 1.37678 * 120.31855 * 359.97438 * 16 15 14 18 18 C 1.40739 * 119.88885 * 0.02562 * 17 16 15 19 19 C 1.41408 * 120.21371 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99635 * 205.17123 * 19 18 17 21 21 C 1.39925 * 119.99981 * 25.17152 * 19 18 17 22 22 N 1.30833 * 120.00068 * 16.78976 * 21 19 18 23 23 Si 1.86802 * 120.00252 * 196.78548 * 21 19 18 24 24 H 1.48497 * 109.47095 * 94.96376 * 23 21 19 25 25 H 1.48505 * 109.47181 * 214.96666 * 23 21 19 26 26 H 1.48504 * 109.46824 * 334.96652 * 23 21 19 27 27 C 1.38226 * 119.95108 * 325.52690 * 14 13 11 28 28 H 1.09002 * 109.46780 * 269.99674 * 1 2 3 29 29 H 1.08996 * 109.47504 * 29.99533 * 1 2 3 30 30 H 1.08998 * 109.47287 * 150.00434 * 1 2 3 31 31 H 1.08999 * 109.46894 * 30.00224 * 3 2 1 32 32 H 1.09003 * 109.46943 * 150.00209 * 3 2 1 33 33 H 0.96696 * 113.99916 * 59.99688 * 6 4 3 34 34 H 0.96995 * 120.00312 * 354.54526 * 13 11 2 35 35 H 1.08001 * 119.78125 * 359.97438 * 15 14 13 36 36 H 1.08000 * 119.83902 * 179.97438 * 16 15 14 37 37 H 1.08005 * 120.05691 * 180.02562 * 17 16 15 38 38 H 0.96998 * 120.00579 * 180.02562 * 22 21 19 39 39 H 1.08008 * 120.16156 * 359.97419 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9641 0.9131 -1.9816 6 8 1.2059 1.9936 -2.0814 7 6 3.3238 2.9681 -1.4443 8 9 4.5441 2.6909 -0.8190 9 9 3.5564 3.3722 -2.7633 10 9 2.6670 3.9913 -0.7524 11 6 2.1389 -1.1672 -0.0005 12 8 3.3548 -1.1673 -0.0010 13 7 1.4650 -2.3344 -0.0065 14 6 2.1605 -3.5434 -0.1225 15 6 1.6965 -4.6786 0.5381 16 6 2.3771 -5.8799 0.4307 17 6 3.5206 -5.9652 -0.3313 18 6 4.0013 -4.8265 -1.0045 19 6 5.1754 -4.9063 -1.7886 20 1 5.7679 -4.0208 -1.9651 21 6 5.5693 -6.1323 -2.3358 22 7 4.7146 -7.1200 -2.4109 23 14 7.3156 -6.3591 -2.9592 24 1 8.1469 -6.9707 -1.8914 25 1 7.3051 -7.2480 -4.1487 26 1 7.8831 -5.0386 -3.3329 27 6 3.3035 -3.6104 -0.8968 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 0.6955 2.6949 -1.6542 34 1 0.4980 -2.3365 0.0694 35 1 0.8006 -4.6212 1.1385 36 1 2.0091 -6.7540 0.9473 37 1 4.0478 -6.9043 -0.4124 38 1 4.9877 -7.9701 -2.7899 39 1 3.6615 -2.7319 -1.4132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455906038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:56 Heat of formation + Delta-G solvation = -199.192803 kcal Electronic energy + Delta-G solvation = -28763.599978 eV Core-core repulsion = 24063.556151 eV Total energy + Delta-G solvation = -4700.043828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.37910 -47.91776 -47.81535 -40.36890 -38.24656 -37.20064 -35.19826 -34.53716 -33.05359 -31.03309 -29.79981 -28.14398 -27.24044 -25.59031 -25.20358 -22.86315 -21.38194 -20.87101 -19.62613 -18.88258 -18.81681 -18.53590 -18.07569 -17.44250 -16.64411 -16.03982 -15.55962 -15.34662 -15.04921 -14.69099 -14.66743 -14.53813 -14.38224 -14.27952 -13.98602 -13.96331 -13.83821 -13.74475 -13.24886 -13.00361 -12.86159 -12.70302 -12.17364 -12.03364 -11.92037 -11.62478 -11.22391 -11.11522 -11.01493 -10.90585 -10.43758 -10.20489 -9.71313 -9.51389 -9.10997 -9.02534 -8.77214 -7.42803 -6.89193 -6.68769 -4.31362 2.20475 2.67151 2.78765 2.93355 3.11749 3.17165 3.23305 3.37395 3.41961 3.58123 3.73972 3.98667 4.10566 4.14270 4.42963 4.55843 4.67627 4.89582 5.17776 5.24307 5.36747 5.47808 5.73395 6.19387 6.25753 6.40541 6.65726 6.76399 6.86261 7.05795 7.10343 7.22336 7.30073 7.65939 7.78541 8.00016 8.12711 8.23533 8.34887 8.67887 8.85522 8.97834 9.01836 10.24112 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.003298 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.898368 B = 8487.490068 C =10092.357915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.629 5.629 3 C 0.106 3.894 4 C 0.053 3.947 5 H 0.149 0.851 6 O -0.525 6.525 7 C 0.424 3.576 8 F -0.173 7.173 9 F -0.176 7.176 10 F -0.187 7.187 11 C 0.699 3.301 12 O -0.561 6.561 13 N -0.676 5.676 14 C 0.166 3.834 15 C -0.262 4.262 16 C -0.092 4.092 17 C -0.172 4.172 18 C 0.121 3.879 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.796 5.796 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.209 4.209 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.380 0.620 34 H 0.395 0.605 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.279 0.721 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.233 16.642 3.327 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.367 5.367 3 C -0.020 4.020 4 C -0.010 4.010 5 H 0.167 0.833 6 O -0.330 6.330 7 C 0.368 3.632 8 F -0.154 7.154 9 F -0.157 7.157 10 F -0.168 7.168 11 C 0.401 3.599 12 O -0.436 6.436 13 N -0.323 5.323 14 C 0.074 3.926 15 C -0.284 4.284 16 C -0.111 4.111 17 C -0.192 4.192 18 C 0.117 3.883 19 C -0.487 4.487 20 H 0.097 0.903 21 C -0.141 4.141 22 N -0.421 5.421 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.231 4.231 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.228 0.772 34 H 0.230 0.770 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.162 15.967 2.822 18.153 hybrid contribution 0.107 0.551 0.041 0.563 sum -8.055 16.518 2.863 18.599 Atomic orbital electron populations 1.21775 0.79425 1.03641 1.01478 1.46784 1.06384 1.03991 1.79534 1.21817 1.00537 0.86065 0.93533 1.23872 0.85451 0.92734 0.98916 0.83325 1.86784 1.30059 1.59732 1.56393 1.21574 0.80723 0.86918 0.73948 1.93242 1.46201 1.93508 1.82454 1.93220 1.94816 1.91846 1.35811 1.93162 1.80749 1.63164 1.79757 1.15932 0.85510 0.80243 0.78219 1.90998 1.11070 1.85511 1.55991 1.42697 1.09495 1.04055 1.76080 1.17242 0.94827 0.82610 0.97961 1.19993 1.04769 0.93590 1.10029 1.20442 0.96248 0.95218 0.99158 1.21345 0.97932 1.00003 0.99937 1.17487 0.91253 0.90210 0.89303 1.19600 1.07043 0.94893 1.27212 0.90347 1.25891 0.98742 0.95328 0.94147 1.69829 1.34625 1.03729 1.33949 0.86303 0.82524 0.79290 0.78638 1.19352 1.20341 1.18538 1.20980 0.97771 0.99133 1.05166 0.92679 0.90517 0.91099 0.88944 0.87224 0.77163 0.76967 0.89399 0.89045 0.86323 0.90985 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 9.98 59.84 0.60 1.24 16 2 N -0.63 -7.60 2.84 -187.35 -0.53 -8.13 16 3 C 0.11 1.07 4.82 -4.04 -0.02 1.05 16 4 C 0.05 0.55 3.21 -26.73 -0.09 0.46 16 5 H 0.15 1.91 8.14 -51.93 -0.42 1.49 16 6 O -0.52 -4.60 12.11 -35.23 -0.43 -5.03 16 7 C 0.42 4.37 2.85 37.16 0.11 4.48 16 8 F -0.17 -2.09 16.71 2.25 0.04 -2.05 16 9 F -0.18 -2.06 17.26 2.25 0.04 -2.02 16 10 F -0.19 -1.65 16.51 2.25 0.04 -1.61 16 11 C 0.70 12.32 8.01 -86.92 -0.70 11.62 16 12 O -0.56 -12.34 13.68 5.29 0.07 -12.26 16 13 N -0.68 -12.00 5.17 -14.27 -0.07 -12.07 16 14 C 0.17 3.75 6.25 -83.76 -0.52 3.22 16 15 C -0.26 -5.75 9.97 -39.10 -0.39 -6.14 16 16 C -0.09 -2.14 10.02 -39.69 -0.40 -2.53 16 17 C -0.17 -4.53 8.69 -38.84 -0.34 -4.87 16 18 C 0.12 3.32 5.57 -106.85 -0.59 2.73 16 19 C -0.46 -12.64 9.05 -37.74 -0.34 -12.98 16 20 H 0.08 2.14 7.90 -52.49 -0.41 1.73 16 21 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 22 N -0.80 -20.79 10.94 55.55 0.61 -20.18 16 23 Si 0.91 19.25 29.59 -169.99 -5.03 14.22 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 27 C -0.21 -5.43 8.39 -38.69 -0.32 -5.75 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.44 7.11 -51.93 -0.37 0.07 16 30 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 31 H 0.09 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.11 1.32 6.94 -51.93 -0.36 0.96 16 33 H 0.38 1.70 8.68 45.56 0.40 2.10 16 34 H 0.40 5.46 6.62 -40.82 -0.27 5.19 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.12 3.20 6.16 -52.48 -0.32 2.88 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.11 2.84 6.48 -52.48 -0.34 2.50 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -32.53 343.00 -6.45 -38.98 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -3.25 Total: 10.60 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.10 Total: -5.60 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.00 Total: -40.39 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.35 Total: -17.29 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.11 Total: -5.68 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.53 -6.45 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455906038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.214 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds