Wall clock time and date at job start Tue Mar 31 2020 16:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00155 * 2 1 4 4 C 1.52998 * 109.47051 * 270.00214 * 3 2 1 5 5 H 1.08998 * 109.47176 * 305.00169 * 4 3 2 6 6 O 1.42904 * 109.47207 * 65.00014 * 4 3 2 7 7 C 1.53003 * 109.47081 * 185.00034 * 4 3 2 8 8 F 1.39898 * 109.47413 * 60.00172 * 7 4 3 9 9 F 1.39898 * 109.46969 * 180.02562 * 7 4 3 10 10 F 1.39898 * 109.46904 * 300.00010 * 7 4 3 11 11 C 1.34781 * 120.00003 * 180.02562 * 2 1 3 12 12 O 1.21590 * 120.00128 * 179.97438 * 11 2 1 13 13 N 1.34775 * 119.99727 * 0.26849 * 11 2 1 14 14 C 1.39958 * 119.99630 * 174.53570 * 13 11 2 15 15 C 1.39292 * 119.94527 * 145.79544 * 14 13 11 16 16 C 1.38486 * 120.43181 * 180.02562 * 15 14 13 17 17 C 1.37678 * 120.31855 * 359.97438 * 16 15 14 18 18 C 1.40739 * 119.88885 * 0.02562 * 17 16 15 19 19 C 1.41408 * 120.21371 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99635 * 205.17123 * 19 18 17 21 21 C 1.39925 * 119.99981 * 25.17152 * 19 18 17 22 22 N 1.30833 * 120.00068 * 16.78976 * 21 19 18 23 23 Si 1.86802 * 120.00252 * 196.78548 * 21 19 18 24 24 H 1.48497 * 109.47095 * 94.96376 * 23 21 19 25 25 H 1.48505 * 109.47181 * 214.96666 * 23 21 19 26 26 H 1.48504 * 109.46824 * 334.96652 * 23 21 19 27 27 C 1.38226 * 119.95108 * 325.52690 * 14 13 11 28 28 H 1.09002 * 109.46780 * 269.99674 * 1 2 3 29 29 H 1.08996 * 109.47504 * 29.99533 * 1 2 3 30 30 H 1.08998 * 109.47287 * 150.00434 * 1 2 3 31 31 H 1.08999 * 109.46894 * 30.00224 * 3 2 1 32 32 H 1.09003 * 109.46943 * 150.00209 * 3 2 1 33 33 H 0.96696 * 113.99916 * 59.99688 * 6 4 3 34 34 H 0.96995 * 120.00312 * 354.54526 * 13 11 2 35 35 H 1.08001 * 119.78125 * 359.97438 * 15 14 13 36 36 H 1.08000 * 119.83902 * 179.97438 * 16 15 14 37 37 H 1.08005 * 120.05691 * 180.02562 * 17 16 15 38 38 H 0.96998 * 120.00579 * 180.02562 * 22 21 19 39 39 H 1.08008 * 120.16156 * 359.97419 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9641 0.9131 -1.9816 6 8 1.2059 1.9936 -2.0814 7 6 3.3238 2.9681 -1.4443 8 9 4.5441 2.6909 -0.8190 9 9 3.5564 3.3722 -2.7633 10 9 2.6670 3.9913 -0.7524 11 6 2.1389 -1.1672 -0.0005 12 8 3.3548 -1.1673 -0.0010 13 7 1.4650 -2.3344 -0.0065 14 6 2.1605 -3.5434 -0.1225 15 6 1.6965 -4.6786 0.5381 16 6 2.3771 -5.8799 0.4307 17 6 3.5206 -5.9652 -0.3313 18 6 4.0013 -4.8265 -1.0045 19 6 5.1754 -4.9063 -1.7886 20 1 5.7679 -4.0208 -1.9651 21 6 5.5693 -6.1323 -2.3358 22 7 4.7146 -7.1200 -2.4109 23 14 7.3156 -6.3591 -2.9592 24 1 8.1469 -6.9707 -1.8914 25 1 7.3051 -7.2480 -4.1487 26 1 7.8831 -5.0386 -3.3329 27 6 3.3035 -3.6104 -0.8968 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 0.6955 2.6949 -1.6542 34 1 0.4980 -2.3365 0.0694 35 1 0.8006 -4.6212 1.1385 36 1 2.0091 -6.7540 0.9473 37 1 4.0478 -6.9043 -0.4124 38 1 4.9877 -7.9701 -2.7899 39 1 3.6615 -2.7319 -1.4132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455906038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:55 Heat of formation + Delta-G solvation = -222.018820 kcal Electronic energy + Delta-G solvation = -28764.589788 eV Core-core repulsion = 24063.556151 eV Total energy + Delta-G solvation = -4701.033638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.24877 -48.75157 -48.73579 -41.69539 -39.51263 -38.59814 -36.31865 -36.24182 -34.80810 -31.95664 -31.72810 -29.81763 -28.02712 -27.27320 -26.55790 -23.85476 -22.97124 -22.65458 -21.00851 -19.96046 -19.73829 -19.49474 -19.38197 -18.86399 -17.56716 -17.54439 -17.03313 -16.51198 -16.44469 -16.25203 -15.93698 -15.55892 -15.42477 -15.15996 -15.12250 -14.89124 -14.86611 -14.82085 -14.70040 -14.51750 -14.04551 -13.86752 -13.55127 -13.35297 -13.01368 -12.91799 -12.88391 -12.75006 -12.71873 -12.17215 -11.99412 -11.80147 -11.54197 -11.23445 -10.97169 -10.78868 -9.78963 -9.37678 -8.71777 -8.57708 -6.35795 0.91479 1.02285 1.31240 1.36378 1.49830 1.50278 1.70605 2.10391 2.21636 2.56137 2.62280 2.75179 2.82933 3.00866 3.29484 3.58666 3.73118 3.77131 4.23234 4.36496 4.46583 4.48674 4.65153 4.71697 4.90709 5.04480 5.11346 5.13539 5.15234 5.32922 5.41143 5.67132 5.81873 6.00199 6.11221 6.14015 6.37507 6.38622 6.70255 6.90440 6.95843 7.03104 7.52058 8.34306 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.003298 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.898368 B = 8487.490068 C =10092.357915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.616 5.616 3 C 0.103 3.897 4 C 0.066 3.934 5 H 0.115 0.885 6 O -0.528 6.528 7 C 0.430 3.570 8 F -0.186 7.186 9 F -0.184 7.184 10 F -0.172 7.172 11 C 0.692 3.308 12 O -0.614 6.614 13 N -0.667 5.667 14 C 0.175 3.825 15 C -0.250 4.250 16 C -0.090 4.090 17 C -0.199 4.199 18 C 0.090 3.910 19 C -0.503 4.503 20 H 0.061 0.939 21 C 0.040 3.960 22 N -0.822 5.822 23 Si 0.979 3.021 24 H -0.259 1.259 25 H -0.261 1.261 26 H -0.267 1.267 27 C -0.236 4.236 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.402 0.598 34 H 0.417 0.583 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.289 0.711 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 17.605 4.320 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.352 5.352 3 C -0.021 4.021 4 C 0.003 3.997 5 H 0.133 0.867 6 O -0.336 6.336 7 C 0.374 3.626 8 F -0.167 7.167 9 F -0.166 7.166 10 F -0.154 7.154 11 C 0.394 3.606 12 O -0.492 6.492 13 N -0.317 5.317 14 C 0.081 3.919 15 C -0.271 4.271 16 C -0.109 4.109 17 C -0.219 4.219 18 C 0.087 3.913 19 C -0.533 4.533 20 H 0.079 0.921 21 C -0.175 4.175 22 N -0.448 5.448 23 Si 0.800 3.200 24 H -0.184 1.184 25 H -0.186 1.186 26 H -0.191 1.191 27 C -0.258 4.258 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.105 0.895 33 H 0.254 0.746 34 H 0.256 0.744 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.674 16.992 3.832 20.429 hybrid contribution 0.649 0.408 -0.201 0.792 sum -10.025 17.400 3.630 20.407 Atomic orbital electron populations 1.22150 0.76242 1.05152 1.03584 1.46791 1.08193 1.02645 1.77599 1.22030 1.00446 0.86109 0.93534 1.23471 0.85933 0.91754 0.98571 0.86709 1.86767 1.29326 1.60820 1.56702 1.21522 0.80270 0.87227 0.73550 1.93221 1.47191 1.93661 1.82659 1.93202 1.94878 1.91940 1.36572 1.93186 1.80291 1.62542 1.79351 1.16215 0.85054 0.81476 0.77895 1.90973 1.13715 1.86470 1.58083 1.42458 1.10379 1.02801 1.76025 1.17294 0.93696 0.84774 0.96163 1.20432 1.05439 0.92391 1.08847 1.20825 0.94974 0.97076 0.97983 1.21304 0.99706 0.99057 1.01820 1.17816 0.91936 0.91418 0.90094 1.19735 1.08301 0.95587 1.29653 0.92121 1.26649 1.02735 0.94351 0.93774 1.69855 1.36337 1.04281 1.34299 0.85245 0.77018 0.79066 0.78662 1.18388 1.18557 1.19071 1.20932 0.99764 0.97976 1.07088 0.90187 0.87527 0.91199 0.84171 0.89513 0.74623 0.74374 0.84979 0.85804 0.87808 0.90021 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.98 127.77 1.28 2.11 16 2 N -0.62 -13.69 2.84 -864.92 -2.45 -16.14 16 3 C 0.10 1.91 4.82 86.38 0.42 2.33 16 4 C 0.07 1.31 3.21 30.59 0.10 1.41 16 5 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 6 O -0.53 -7.97 12.11 -148.98 -1.80 -9.78 16 7 C 0.43 8.57 2.85 71.98 0.21 8.77 16 8 F -0.19 -4.58 16.71 44.97 0.75 -3.82 16 9 F -0.18 -4.27 17.26 44.97 0.78 -3.49 16 10 F -0.17 -2.64 16.51 44.97 0.74 -1.90 16 11 C 0.69 24.24 8.01 179.05 1.43 25.67 16 12 O -0.61 -28.25 13.68 -4.00 -0.05 -28.30 16 13 N -0.67 -22.85 5.17 -317.32 -1.64 -24.49 16 14 C 0.17 7.87 6.25 38.09 0.24 8.10 16 15 C -0.25 -10.39 9.97 22.58 0.23 -10.17 16 16 C -0.09 -4.09 10.02 22.20 0.22 -3.87 16 17 C -0.20 -10.77 8.69 22.75 0.20 -10.57 16 18 C 0.09 5.25 5.57 -21.31 -0.12 5.13 16 19 C -0.50 -29.63 9.05 23.46 0.21 -29.42 16 20 H 0.06 3.62 7.90 -2.91 -0.02 3.59 16 21 C 0.04 2.12 5.16 85.25 0.44 2.56 16 22 N -0.82 -44.23 10.94 21.82 0.24 -43.99 16 23 Si 0.98 40.71 29.59 68.60 2.03 42.74 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 C -0.24 -12.87 8.39 22.85 0.19 -12.67 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.11 0.68 7.11 -2.39 -0.02 0.67 16 30 H 0.07 0.88 6.44 -2.39 -0.02 0.87 16 31 H 0.14 1.25 7.87 -2.39 -0.02 1.23 16 32 H 0.09 2.08 6.94 -2.39 -0.02 2.07 16 33 H 0.40 2.01 8.68 -74.06 -0.64 1.37 16 34 H 0.42 10.32 6.62 -92.71 -0.61 9.70 16 35 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 36 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 37 H 0.10 5.82 6.16 -2.91 -0.02 5.81 16 38 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 39 H 0.08 4.77 6.48 -2.91 -0.02 4.75 16 Total: -1.00 -76.74 343.00 3.50 -73.23 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.12 Total: 26.57 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.04 Total: -10.62 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -3.86 Total: -84.62 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.86 Total: -38.08 kcal Atomic # 9 Polarization: -11.49 SS G_CDS: 2.27 Total: -9.22 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -76.74 3.50 -73.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455906038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.786 kcal (2) G-P(sol) polarization free energy of solvation -76.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds