Wall clock time and date at job start Tue Mar 31 2020 16:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99645 * 2 1 4 4 C 1.53006 * 109.46793 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47238 * 64.99777 * 4 3 2 6 6 C 1.37099 * 119.99871 * 269.99769 * 5 4 3 7 7 H 1.07997 * 120.00403 * 142.96903 * 6 5 4 8 8 C 1.38952 * 120.00049 * 322.97003 * 6 5 4 9 9 N 1.31408 * 120.00640 * 158.84890 * 8 6 5 10 10 Si 1.86808 * 119.99933 * 338.84727 * 8 6 5 11 11 H 1.48498 * 109.46981 * 95.26016 * 10 8 6 12 12 H 1.48499 * 109.47134 * 215.26184 * 10 8 6 13 13 H 1.48508 * 109.46839 * 335.26380 * 10 8 6 14 14 C 1.34772 * 120.00640 * 90.00292 * 5 4 3 15 15 O 1.21297 * 119.99345 * 356.00602 * 14 5 4 16 16 C 1.50697 * 120.00590 * 176.00898 * 14 5 4 17 17 C 1.50695 * 109.47483 * 185.82048 * 16 14 5 18 18 C 1.38223 * 120.42549 * 267.07987 * 17 16 14 19 19 N 1.31849 * 120.76703 * 179.97438 * 18 17 16 20 20 C 1.31894 * 121.72743 * 359.97438 * 19 18 17 21 21 C 1.38176 * 120.76065 * 359.97438 * 20 19 18 22 22 C 1.38637 * 120.41371 * 87.03267 * 17 16 14 23 23 C 1.50690 * 120.79098 * 0.02562 * 22 17 16 24 24 F 1.39902 * 109.47134 * 180.64398 * 23 22 17 25 25 F 1.39906 * 109.47010 * 300.64420 * 23 22 17 26 26 F 1.39897 * 109.47459 * 60.64522 * 23 22 17 27 27 H 1.08998 * 109.48077 * 300.00633 * 1 2 3 28 28 H 1.09005 * 109.47264 * 60.00857 * 1 2 3 29 29 H 1.09005 * 109.47136 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47884 * 59.99110 * 3 2 1 31 31 H 1.09008 * 109.47047 * 299.99163 * 3 2 1 32 32 H 1.08994 * 109.46875 * 304.99131 * 4 3 2 33 33 H 1.09003 * 109.46778 * 184.99564 * 4 3 2 34 34 H 0.96996 * 120.00764 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.46727 * 65.82756 * 16 14 5 36 36 H 1.08998 * 109.47243 * 305.83049 * 16 14 5 37 37 H 1.07998 * 119.61941 * 359.94973 * 18 17 16 38 38 H 1.08001 * 119.61860 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.41566 * 179.74836 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.0980 -0.7991 -1.3343 7 1 3.8317 -1.3100 -2.2478 8 6 4.5635 -1.5233 -0.2437 9 7 4.3018 -2.8074 -0.1475 10 14 5.5616 -0.6714 1.0859 11 1 4.6627 -0.2655 2.1960 12 1 6.5960 -1.6035 1.6021 13 1 6.2195 0.5321 0.5164 14 6 4.2634 1.3327 -2.3199 15 8 4.0871 2.5318 -2.2694 16 6 4.8030 0.7028 -3.5781 17 6 5.1723 1.7827 -4.5622 18 6 4.2617 2.2052 -5.5123 19 7 4.5775 3.1498 -6.3762 20 6 5.7637 3.7266 -6.3705 21 6 6.7248 3.3568 -5.4492 22 6 6.4296 2.3657 -4.5253 23 6 7.4506 1.9336 -3.5047 24 9 8.6214 2.6811 -3.6709 25 9 6.9419 2.1434 -2.2184 26 9 7.7364 0.5750 -3.6772 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6884 1.8465 0.8898 31 1 1.6886 1.8464 -0.8901 32 1 3.8507 0.5687 0.8428 33 1 3.9784 2.1766 0.0901 34 1 4.6271 -3.3131 0.6137 35 1 4.0419 0.0570 -4.0162 36 1 5.6869 0.1118 -3.3384 37 1 3.2801 1.7561 -5.5478 38 1 5.9859 4.4973 -7.0936 39 1 7.6957 3.8299 -5.4521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518794582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:36 Heat of formation + Delta-G solvation = -191.489994 kcal Electronic energy + Delta-G solvation = -30386.761136 eV Core-core repulsion = 25687.051328 eV Total energy + Delta-G solvation = -4699.709809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.32404 -48.83905 -48.74979 -41.61199 -40.53036 -38.60763 -36.70309 -35.02301 -33.93868 -33.50240 -31.37331 -29.16623 -27.60022 -27.22992 -26.52591 -24.52224 -23.85934 -23.12137 -20.88968 -19.74827 -19.66944 -19.59932 -18.84977 -18.23929 -17.60932 -17.39960 -17.04664 -16.55409 -16.37333 -16.16615 -16.07478 -15.85617 -15.59976 -15.44247 -15.42563 -15.17991 -14.91803 -14.90362 -14.82229 -14.46966 -14.36215 -14.13576 -13.64099 -13.46638 -13.29230 -13.11247 -12.87934 -12.70538 -12.57225 -12.39781 -11.97647 -11.70806 -11.24720 -11.05608 -10.71421 -10.63750 -10.45194 -10.03758 -9.73371 -8.44645 -6.02221 -0.28544 -0.02163 1.17118 1.30107 1.39875 1.47908 1.85925 2.20507 2.42152 2.52562 2.69228 2.86405 2.91841 3.13242 3.28104 3.36964 3.62985 3.68991 3.89920 4.02381 4.13224 4.22504 4.31760 4.33061 4.38030 4.52630 4.55769 4.60465 4.64781 4.66287 4.75743 4.81564 4.85660 4.98063 5.43848 5.49958 6.09152 6.26749 6.40365 6.78365 7.01437 7.43388 7.77432 8.69711 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.005341 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.322835 B = 5241.285867 C = 6382.240400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.062 3.938 4 C 0.093 3.907 5 N -0.462 5.462 6 C -0.323 4.323 7 H 0.085 0.915 8 C 0.042 3.958 9 N -0.890 5.890 10 Si 0.910 3.090 11 H -0.262 1.262 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.484 3.516 15 O -0.608 6.608 16 C -0.096 4.096 17 C -0.068 4.068 18 C 0.109 3.891 19 N -0.474 5.474 20 C 0.099 3.901 21 C -0.119 4.119 22 C -0.145 4.145 23 C 0.504 3.496 24 F -0.168 7.168 25 F -0.181 7.181 26 F -0.175 7.175 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.276 0.724 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.175 0.825 38 H 0.208 0.792 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 10.215 -7.708 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.016 4.016 4 C -0.029 4.029 5 N -0.182 5.182 6 C -0.450 4.450 7 H 0.103 0.897 8 C -0.162 4.162 9 N -0.527 5.527 10 Si 0.737 3.263 11 H -0.189 1.189 12 H -0.214 1.214 13 H -0.192 1.192 14 C 0.275 3.725 15 O -0.494 6.494 16 C -0.136 4.136 17 C -0.070 4.070 18 C -0.048 4.048 19 N -0.182 5.182 20 C -0.058 4.058 21 C -0.139 4.139 22 C -0.155 4.155 23 C 0.450 3.550 24 F -0.149 7.149 25 F -0.162 7.162 26 F -0.157 7.157 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.192 0.808 38 H 0.225 0.775 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.606 10.684 -8.149 13.533 hybrid contribution 1.012 -0.491 1.934 2.238 sum 2.618 10.193 -6.214 12.222 Atomic orbital electron populations 1.22854 0.80558 1.03097 1.00377 1.88165 1.20524 1.27376 1.95327 1.22765 0.93110 0.85151 1.00533 1.21843 0.94368 0.98545 0.88193 1.43677 1.57944 1.06431 1.10153 1.18778 1.44156 0.79655 1.02446 0.89713 1.25633 0.96299 0.95385 0.98929 1.69807 1.42493 1.08956 1.31401 0.86411 0.79679 0.79244 0.80946 1.18881 1.21355 1.19190 1.20365 0.80021 0.86012 0.86118 1.90539 1.58869 1.15416 1.84566 1.20571 1.04375 0.96462 0.92210 1.20332 0.93241 0.96826 0.96630 1.22832 0.99178 0.93026 0.89720 1.67762 1.20533 1.07156 1.22737 1.23478 0.87200 0.98023 0.97052 1.22342 1.03428 0.94595 0.93491 1.20395 0.94645 1.01887 0.98527 1.18377 0.80653 0.75117 0.80886 1.93155 1.50186 1.76259 1.95344 1.93287 1.87010 1.94551 1.41394 1.93196 1.93920 1.33253 1.95310 0.92784 0.93886 0.89520 0.90862 0.93650 0.91959 0.89411 0.91439 0.86438 0.88370 0.80821 0.77505 0.80545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.08 16 2 O -0.39 -16.55 10.18 -148.98 -1.52 -18.07 16 3 C 0.06 2.38 6.28 71.98 0.45 2.83 16 4 C 0.09 4.10 4.60 86.38 0.40 4.50 16 5 N -0.46 -21.89 2.17 -635.55 -1.38 -23.27 16 6 C -0.32 -16.71 8.49 84.04 0.71 -16.00 16 7 H 0.09 4.61 7.39 -2.91 -0.02 4.59 16 8 C 0.04 2.25 5.33 84.93 0.45 2.70 16 9 N -0.89 -49.76 13.96 21.66 0.30 -49.46 16 10 Si 0.91 42.72 24.94 68.60 1.71 44.43 16 11 H -0.26 -11.71 6.68 99.48 0.66 -11.05 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 14 C 0.48 21.57 6.12 87.66 0.54 22.11 16 15 O -0.61 -28.48 15.45 -3.08 -0.05 -28.53 16 16 C -0.10 -3.64 3.89 29.10 0.11 -3.53 16 17 C -0.07 -2.22 4.37 -19.77 -0.09 -2.31 16 18 C 0.11 3.18 10.85 84.69 0.92 4.09 16 19 N -0.47 -12.52 10.36 -195.85 -2.03 -14.55 16 20 C 0.10 2.04 11.18 84.67 0.95 2.99 16 21 C -0.12 -2.67 9.50 22.36 0.21 -2.46 16 22 C -0.15 -4.42 5.40 -19.67 -0.11 -4.52 16 23 C 0.50 16.63 2.83 71.23 0.20 16.83 16 24 F -0.17 -4.71 16.08 44.97 0.72 -3.99 16 25 F -0.18 -7.30 15.05 44.97 0.68 -6.62 16 26 F -0.18 -6.00 15.50 44.97 0.70 -5.30 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.06 2.86 3.10 -2.39 -0.01 2.85 16 33 H 0.09 3.70 7.48 -2.39 -0.02 3.69 16 34 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.12 4.08 7.78 -2.38 -0.02 4.06 16 36 H 0.10 3.92 5.72 -2.39 -0.01 3.90 16 37 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.18 2.80 7.27 -2.91 -0.02 2.77 16 Total: -1.00 -66.42 338.31 6.20 -60.22 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.06 Total: 15.81 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 6.00 Total: 29.33 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -3.11 Total: -87.29 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -1.56 Total: -46.60 kcal Atomic # 9 Polarization: -18.01 SS G_CDS: 2.10 Total: -15.91 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.71 Total: 44.43 kcal Total: -66.42 6.20 -60.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518794582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.270 kcal (2) G-P(sol) polarization free energy of solvation -66.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds