Wall clock time and date at job start Tue Mar 31 2020 16:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 99.99710 * 2 1 4 4 N 1.30303 * 126.17217 * 0.02562 * 3 2 1 5 5 N 1.26101 * 117.60749 * 179.97438 * 4 3 2 6 6 C 1.29325 * 117.97539 * 0.02562 * 5 4 3 7 7 C 1.50696 * 126.06288 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47241 * 90.02648 * 7 6 5 9 9 C 1.46900 * 111.00170 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47092 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47572 * 59.99748 * 10 9 8 12 12 O 1.42895 * 109.47361 * 299.99754 * 10 9 8 13 13 C 1.53005 * 109.47109 * 179.97438 * 10 9 8 14 14 N 1.46897 * 109.47217 * 180.46665 * 13 10 9 15 15 C 1.46907 * 110.99810 * 199.85288 * 14 13 10 16 16 C 1.46899 * 111.00429 * 75.89468 * 14 13 10 17 17 C 1.50704 * 109.47168 * 189.99893 * 16 14 13 18 18 H 1.07999 * 120.00291 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99901 * 179.97438 * 17 16 14 20 20 N 1.31512 * 119.99697 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99846 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46849 * 60.00703 * 21 19 17 23 23 H 1.48502 * 109.46842 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47293 * 300.00442 * 21 19 17 25 25 S 1.76482 * 107.87774 * 359.97438 * 6 5 4 26 26 H 1.08994 * 109.47516 * 300.00339 * 1 2 3 27 27 H 1.09001 * 109.47187 * 60.00447 * 1 2 3 28 28 H 1.08996 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46845 * 210.02487 * 7 6 5 30 30 H 1.08996 * 109.47248 * 330.02303 * 7 6 5 31 31 H 1.00897 * 110.99580 * 303.95135 * 8 7 6 32 32 H 1.08999 * 109.46614 * 299.99889 * 9 8 7 33 33 H 1.08998 * 109.47219 * 59.99557 * 9 8 7 34 34 H 0.96701 * 114.00272 * 299.99748 * 12 10 9 35 35 H 1.09005 * 109.46701 * 300.46019 * 13 10 9 36 36 H 1.08999 * 109.47210 * 60.46275 * 13 10 9 37 37 H 1.08997 * 109.47418 * 64.82015 * 15 14 13 38 38 H 1.08998 * 109.46551 * 184.82000 * 15 14 13 39 39 H 1.08997 * 109.46509 * 304.81415 * 15 14 13 40 40 H 1.08998 * 109.47099 * 309.99800 * 16 14 13 41 41 H 1.09002 * 109.47022 * 70.00102 * 16 14 13 42 42 H 0.97010 * 119.99475 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.2135 2.6753 0.0005 5 7 1.6149 3.8707 0.0009 6 6 2.8908 4.0822 0.0003 7 6 3.5667 5.4291 0.0001 8 7 3.7875 5.8663 1.3850 9 6 4.4457 7.1791 1.4240 10 6 4.6578 7.6001 2.8795 11 1 5.2848 6.8643 3.3830 12 8 3.3938 7.6813 3.5410 13 6 5.3439 8.9672 2.9201 14 7 5.5576 9.3664 4.3175 15 6 5.7650 10.8168 4.4248 16 6 6.6813 8.6286 4.9100 17 6 6.7175 8.8768 6.3960 18 1 5.9793 9.5180 6.8546 19 6 7.6924 8.2842 7.1703 20 7 8.5909 7.5030 6.6119 21 14 7.7368 8.5912 9.0124 22 1 6.4642 8.1287 9.6220 23 1 8.8728 7.8455 9.6112 24 1 7.9090 10.0439 9.2681 25 16 3.7000 2.5138 -0.0002 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.5246 5.3547 -0.5146 30 1 2.9338 6.1531 -0.5130 31 1 2.9212 5.8811 1.9020 32 1 5.4097 7.1173 0.9191 33 1 3.8185 7.9150 0.9209 34 1 2.7832 8.3185 3.1458 35 1 6.3045 8.9068 2.4085 36 1 4.7135 9.7050 2.4238 37 1 4.8561 11.3372 4.1230 38 1 6.0055 11.0741 5.4563 39 1 6.5875 11.1151 3.7748 40 1 6.5549 7.5623 4.7226 41 1 7.6153 8.9681 4.4621 42 1 9.2771 7.0864 7.1567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565299679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:40 Heat of formation + Delta-G solvation = 21.684024 kcal Electronic energy + Delta-G solvation = -23055.948922 eV Core-core repulsion = 19517.829347 eV Total energy + Delta-G solvation = -3538.119576 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22134 -38.33766 -36.29155 -35.12921 -32.47876 -32.25877 -30.15586 -29.30242 -28.02728 -27.23617 -25.76085 -24.30851 -23.13385 -21.55833 -21.02777 -20.05433 -19.48749 -17.61629 -16.80349 -16.32841 -16.20471 -15.88794 -15.37924 -14.99389 -14.77276 -14.53227 -14.40858 -14.00734 -13.96519 -13.76174 -13.45191 -13.26252 -12.95713 -12.71239 -12.42825 -12.02085 -11.90636 -11.48375 -11.42070 -11.16191 -10.93691 -10.87595 -10.78074 -10.73615 -10.63029 -10.47186 -10.33493 -9.92868 -9.75255 -9.64588 -9.12971 -8.70073 -8.39168 -8.20399 -7.19656 -5.98917 -3.99369 -0.07240 0.23177 0.84838 1.12520 1.60194 2.17976 3.36758 3.40484 3.44142 3.65040 4.09014 4.45318 4.47711 4.62786 4.69862 4.70550 4.78349 4.88040 5.08335 5.21751 5.25400 5.32351 5.34556 5.38430 5.52896 5.67110 5.73379 6.01971 6.13013 6.31908 6.47543 6.66413 6.74177 7.13051 7.30190 7.33525 7.82471 8.06137 8.12896 8.18875 8.23040 8.58068 9.07398 9.64246 11.12105 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.002112 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.672272 B =13253.474301 C =14295.297103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S 0.024 5.976 3 C -0.019 4.019 4 N -0.267 5.267 5 N -0.251 5.251 6 C 0.038 3.962 7 C 0.138 3.862 8 N -0.678 5.678 9 C 0.030 3.970 10 C 0.116 3.884 11 H 0.112 0.888 12 O -0.540 6.540 13 C 0.027 3.973 14 N -0.531 5.531 15 C 0.038 3.962 16 C 0.193 3.807 17 C -0.505 4.505 18 H 0.062 0.938 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.278 1.278 25 S 0.145 5.855 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.357 0.643 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.360 0.640 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.007 0.993 40 H 0.032 0.968 41 H -0.012 1.012 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.816 -11.116 -19.377 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.252 5.748 3 C -0.406 4.406 4 N -0.109 5.109 5 N -0.088 5.088 6 C -0.246 4.246 7 C 0.005 3.995 8 N -0.312 5.312 9 C -0.100 4.100 10 C 0.056 3.944 11 H 0.130 0.870 12 O -0.342 6.342 13 C -0.103 4.103 14 N -0.255 5.255 15 C -0.111 4.111 16 C 0.068 3.932 17 C -0.544 4.544 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.204 1.204 25 S 0.385 5.615 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.205 0.795 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.026 0.974 40 H 0.050 0.950 41 H 0.006 0.994 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.783 -13.017 -18.610 25.586 hybrid contribution -0.836 2.317 -0.116 2.465 sum -12.618 -10.700 -18.726 24.988 Atomic orbital electron populations 1.23665 0.93400 1.07075 1.07656 1.85769 1.08306 0.90499 1.90220 1.31455 0.95595 1.06236 1.07283 1.71722 1.28489 0.93459 1.17223 1.70782 1.12002 1.11887 1.14136 1.29796 0.91759 1.00104 1.02916 1.20412 0.99306 0.87225 0.92531 1.60394 1.31231 1.29219 1.10346 1.22734 0.99611 0.88381 0.99237 1.21973 0.85762 0.97069 0.89583 0.87039 1.86718 1.25245 1.63838 1.58428 1.22650 0.98962 0.96396 0.92314 1.62018 1.45790 1.04760 1.12926 1.22226 0.97558 0.89008 1.02296 1.19768 0.85199 0.93617 0.94646 1.21114 1.12343 1.28847 0.92071 0.91946 1.24984 0.95594 0.95272 0.98814 1.69949 1.16474 1.31686 1.35813 0.86562 0.77514 0.78152 0.85192 1.20119 1.21389 1.20359 1.85910 1.07347 1.00036 1.68233 0.88617 0.88767 0.87005 0.88226 0.91354 0.82314 0.89830 0.94688 0.79528 0.94821 0.92275 0.93798 0.90445 0.97406 0.95029 0.99402 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.03 101.05 1.01 0.16 16 2 S 0.02 0.19 22.96 -107.50 -2.47 -2.28 16 3 C -0.02 -0.21 7.85 52.11 0.41 0.20 16 4 N -0.27 -3.41 10.96 31.32 0.34 -3.07 16 5 N -0.25 -3.30 11.55 33.57 0.39 -2.91 16 6 C 0.04 0.43 7.30 -13.34 -0.10 0.33 16 7 C 0.14 1.32 6.31 -4.98 -0.03 1.29 16 8 N -0.68 -7.95 6.49 -115.07 -0.75 -8.70 16 9 C 0.03 0.35 5.39 -3.83 -0.02 0.32 16 10 C 0.12 1.82 3.30 -26.73 -0.09 1.73 16 11 H 0.11 2.16 6.78 -51.93 -0.35 1.81 16 12 O -0.54 -8.76 12.55 -35.23 -0.44 -9.20 16 13 C 0.03 0.45 4.66 -3.82 -0.02 0.43 16 14 N -0.53 -11.35 4.56 -244.36 -1.11 -12.47 16 15 C 0.04 0.73 9.37 60.07 0.56 1.29 16 16 C 0.19 5.04 4.55 -4.97 -0.02 5.01 16 17 C -0.51 -14.42 8.39 -34.44 -0.29 -14.71 16 18 H 0.06 1.77 7.17 -52.49 -0.38 1.40 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 21 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 S 0.14 1.49 23.54 -107.50 -2.53 -1.04 16 26 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.36 4.52 8.11 -39.29 -0.32 4.20 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.36 4.36 9.05 45.56 0.41 4.77 16 35 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 36 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.63 6.67 -51.93 -0.35 1.28 16 39 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 40 H 0.03 0.88 6.63 -51.93 -0.34 0.54 16 41 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -33.38 379.37 -9.33 -42.71 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.51 Total: 2.95 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 1.32 Total: -2.46 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.39 Total: -53.40 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.44 Total: -9.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -5.00 Total: -3.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.38 -9.33 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565299679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.393 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds