Wall clock time and date at job start Tue Mar 31 2020 16:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 99.99710 * 2 1 4 4 N 1.30303 * 126.17217 * 0.02562 * 3 2 1 5 5 N 1.26101 * 117.60749 * 179.97438 * 4 3 2 6 6 C 1.29325 * 117.97539 * 0.02562 * 5 4 3 7 7 C 1.50696 * 126.06288 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47241 * 90.02648 * 7 6 5 9 9 C 1.46900 * 111.00170 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47092 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47572 * 59.99748 * 10 9 8 12 12 O 1.42895 * 109.47361 * 299.99754 * 10 9 8 13 13 C 1.53005 * 109.47109 * 179.97438 * 10 9 8 14 14 N 1.46897 * 109.47217 * 180.46665 * 13 10 9 15 15 C 1.46907 * 110.99810 * 199.85288 * 14 13 10 16 16 C 1.46899 * 111.00429 * 75.89468 * 14 13 10 17 17 C 1.50704 * 109.47168 * 189.99893 * 16 14 13 18 18 H 1.07999 * 120.00291 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99901 * 179.97438 * 17 16 14 20 20 N 1.31512 * 119.99697 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99846 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46849 * 60.00703 * 21 19 17 23 23 H 1.48502 * 109.46842 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47293 * 300.00442 * 21 19 17 25 25 S 1.76482 * 107.87774 * 359.97438 * 6 5 4 26 26 H 1.08994 * 109.47516 * 300.00339 * 1 2 3 27 27 H 1.09001 * 109.47187 * 60.00447 * 1 2 3 28 28 H 1.08996 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46845 * 210.02487 * 7 6 5 30 30 H 1.08996 * 109.47248 * 330.02303 * 7 6 5 31 31 H 1.00897 * 110.99580 * 303.95135 * 8 7 6 32 32 H 1.08999 * 109.46614 * 299.99889 * 9 8 7 33 33 H 1.08998 * 109.47219 * 59.99557 * 9 8 7 34 34 H 0.96701 * 114.00272 * 299.99748 * 12 10 9 35 35 H 1.09005 * 109.46701 * 300.46019 * 13 10 9 36 36 H 1.08999 * 109.47210 * 60.46275 * 13 10 9 37 37 H 1.08997 * 109.47418 * 64.82015 * 15 14 13 38 38 H 1.08998 * 109.46551 * 184.82000 * 15 14 13 39 39 H 1.08997 * 109.46509 * 304.81415 * 15 14 13 40 40 H 1.08998 * 109.47099 * 309.99800 * 16 14 13 41 41 H 1.09002 * 109.47022 * 70.00102 * 16 14 13 42 42 H 0.97010 * 119.99475 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.2135 2.6753 0.0005 5 7 1.6149 3.8707 0.0009 6 6 2.8908 4.0822 0.0003 7 6 3.5667 5.4291 0.0001 8 7 3.7875 5.8663 1.3850 9 6 4.4457 7.1791 1.4240 10 6 4.6578 7.6001 2.8795 11 1 5.2848 6.8643 3.3830 12 8 3.3938 7.6813 3.5410 13 6 5.3439 8.9672 2.9201 14 7 5.5576 9.3664 4.3175 15 6 5.7650 10.8168 4.4248 16 6 6.6813 8.6286 4.9100 17 6 6.7175 8.8768 6.3960 18 1 5.9793 9.5180 6.8546 19 6 7.6924 8.2842 7.1703 20 7 8.5909 7.5030 6.6119 21 14 7.7368 8.5912 9.0124 22 1 6.4642 8.1287 9.6220 23 1 8.8728 7.8455 9.6112 24 1 7.9090 10.0439 9.2681 25 16 3.7000 2.5138 -0.0002 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.5246 5.3547 -0.5146 30 1 2.9338 6.1531 -0.5130 31 1 2.9212 5.8811 1.9020 32 1 5.4097 7.1173 0.9191 33 1 3.8185 7.9150 0.9209 34 1 2.7832 8.3185 3.1458 35 1 6.3045 8.9068 2.4085 36 1 4.7135 9.7050 2.4238 37 1 4.8561 11.3372 4.1230 38 1 6.0055 11.0741 5.4563 39 1 6.5875 11.1151 3.7748 40 1 6.5549 7.5623 4.7226 41 1 7.6153 8.9681 4.4621 42 1 9.2771 7.0864 7.1567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565299679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:39 Heat of formation + Delta-G solvation = -6.546158 kcal Electronic energy + Delta-G solvation = -23057.173075 eV Core-core repulsion = 19517.829347 eV Total energy + Delta-G solvation = -3539.343728 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07542 -39.60012 -37.62024 -36.36148 -34.59285 -33.17848 -31.26336 -29.92764 -29.38337 -28.82400 -26.93878 -25.66857 -24.57668 -22.79500 -21.91619 -21.62895 -20.32504 -18.60809 -18.37905 -17.64743 -17.29000 -16.96625 -16.58425 -16.41525 -15.91720 -15.82361 -15.59257 -15.20951 -14.88925 -14.63837 -14.56707 -14.48180 -14.00006 -13.86218 -13.58201 -13.43376 -13.15584 -12.96470 -12.80890 -12.56737 -12.52114 -12.29269 -12.15259 -12.11496 -11.75760 -11.61897 -11.50971 -11.33259 -11.28290 -10.83457 -10.68990 -10.59324 -9.53690 -8.92005 -8.87967 -8.19279 -6.28419 -0.89025 -0.50972 0.04652 0.34837 1.04421 1.30776 1.40007 1.43893 1.51452 2.40880 2.79282 3.12309 3.15636 3.46842 3.69821 3.73351 3.92635 4.03111 4.16964 4.22518 4.27897 4.34271 4.37631 4.48737 4.53853 4.59122 4.66080 4.79688 4.81033 4.87363 5.10524 5.15409 5.26749 5.32777 5.65596 5.81848 6.08766 6.19850 6.37201 6.67724 6.87405 7.06846 7.33566 7.40603 8.91535 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.002112 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.672272 B =13253.474301 C =14295.297103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S 0.037 5.963 3 C -0.026 4.026 4 N -0.292 5.292 5 N -0.276 5.276 6 C 0.034 3.966 7 C 0.142 3.858 8 N -0.694 5.694 9 C 0.045 3.955 10 C 0.123 3.877 11 H 0.063 0.937 12 O -0.561 6.561 13 C 0.027 3.973 14 N -0.544 5.544 15 C 0.039 3.961 16 C 0.210 3.790 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.266 1.266 25 S 0.152 5.848 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.350 0.650 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.379 0.621 35 H 0.032 0.968 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.013 0.987 40 H 0.003 0.997 41 H -0.040 1.040 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.901 -10.712 -20.086 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.265 5.735 3 C -0.413 4.413 4 N -0.134 5.134 5 N -0.112 5.112 6 C -0.251 4.251 7 C 0.009 3.991 8 N -0.327 5.327 9 C -0.085 4.085 10 C 0.063 3.937 11 H 0.081 0.919 12 O -0.367 6.367 13 C -0.102 4.102 14 N -0.268 5.268 15 C -0.109 4.109 16 C 0.084 3.916 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.190 1.190 25 S 0.392 5.608 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.160 0.840 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.169 0.831 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.050 0.950 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.021 0.979 41 H -0.023 1.023 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.889 -12.596 -19.346 26.440 hybrid contribution -0.559 2.114 0.057 2.187 sum -13.448 -10.482 -19.289 25.745 Atomic orbital electron populations 1.23774 0.91589 1.08863 1.07238 1.85741 1.10250 0.88261 1.89245 1.31904 0.95654 1.07463 1.06243 1.71671 1.29224 0.93719 1.18769 1.70727 1.13003 1.12443 1.15060 1.30041 0.91515 1.00998 1.02551 1.20530 1.00441 0.86674 0.91440 1.60339 1.31044 1.29574 1.11786 1.22526 1.00739 0.89051 0.96143 1.21719 0.84961 0.95296 0.91695 0.91908 1.86665 1.25676 1.64835 1.59474 1.22782 0.99735 0.97993 0.89731 1.61919 1.43186 1.05609 1.16043 1.22240 0.99625 0.87920 1.01113 1.19358 0.85709 0.92528 0.93998 1.21462 1.12386 1.28828 0.93519 0.92178 1.25911 0.95133 0.94892 1.03887 1.70077 1.17126 1.32562 1.37679 0.85469 0.77654 0.78634 0.79063 1.19671 1.20734 1.19038 1.85822 1.07129 0.99696 1.68183 0.89329 0.88832 0.84014 0.86400 0.89731 0.83102 0.88972 0.91597 0.77308 0.95006 0.88367 0.90041 0.92868 0.96851 0.97896 1.02255 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 10.03 113.37 1.14 -0.34 16 2 S 0.04 0.55 22.96 -56.49 -1.30 -0.75 16 3 C -0.03 -0.56 7.85 130.47 1.02 0.46 16 4 N -0.29 -7.43 10.96 -54.83 -0.60 -8.03 16 5 N -0.28 -7.19 11.55 -47.71 -0.55 -7.74 16 6 C 0.03 0.74 7.30 88.48 0.65 1.38 16 7 C 0.14 2.47 6.31 85.56 0.54 3.01 16 8 N -0.69 -15.58 6.49 -517.96 -3.36 -18.95 16 9 C 0.04 0.94 5.39 86.30 0.47 1.41 16 10 C 0.12 3.82 3.30 30.59 0.10 3.92 16 11 H 0.06 2.57 6.78 -2.39 -0.02 2.55 16 12 O -0.56 -17.83 12.55 -148.98 -1.87 -19.70 16 13 C 0.03 0.86 4.66 86.31 0.40 1.26 16 14 N -0.54 -23.19 4.56 -927.03 -4.22 -27.42 16 15 C 0.04 1.47 9.37 127.69 1.20 2.66 16 16 C 0.21 11.40 4.55 85.56 0.39 11.79 16 17 C -0.52 -30.56 8.39 25.60 0.21 -30.34 16 18 H 0.06 3.46 7.17 -2.91 -0.02 3.43 16 19 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 20 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 21 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 S 0.15 3.07 23.54 -56.49 -1.33 1.74 16 26 H 0.09 1.08 8.14 -2.40 -0.02 1.06 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.14 0.57 8.14 -2.40 -0.02 0.55 16 29 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.35 8.66 8.11 -89.70 -0.73 7.93 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.38 8.42 9.05 -74.06 -0.67 7.75 16 35 H 0.03 1.05 8.00 -2.38 -0.02 1.03 16 36 H 0.10 2.40 7.94 -2.39 -0.02 2.38 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 38 H 0.05 2.22 6.67 -2.39 -0.02 2.21 16 39 H 0.01 0.47 8.13 -2.39 -0.02 0.45 16 40 H 0.00 0.18 6.63 -2.39 -0.02 0.16 16 41 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 42 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -74.62 379.37 -4.69 -79.31 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.35 Total: 15.46 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 6.58 Total: -4.34 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -8.45 Total: -119.24 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -1.87 Total: -19.70 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.63 Total: 0.99 kcal Total: -74.62 -4.69 -79.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565299679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.766 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds