Wall clock time and date at job start Tue Mar 31 2020 16:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99691 * 2 1 4 4 C 1.53003 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46863 * 65.00012 * 4 3 2 6 6 C 1.46512 * 119.99611 * 262.85669 * 5 4 3 7 7 C 1.50701 * 109.46909 * 270.00083 * 6 5 4 8 8 H 1.07994 * 120.00185 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99691 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00261 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00122 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47300 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47338 * 120.00012 * 11 9 7 14 14 H 1.48501 * 109.47342 * 240.00209 * 11 9 7 15 15 C 1.34770 * 120.00374 * 82.86261 * 5 4 3 16 16 O 1.21516 * 119.99992 * 183.16778 * 15 5 4 17 17 C 1.48168 * 120.00172 * 3.15908 * 15 5 4 18 18 C 1.39308 * 119.72796 * 173.18880 * 17 15 5 19 19 C 1.38586 * 119.06118 * 180.27502 * 18 17 15 20 20 C 1.38630 * 118.48457 * 359.46055 * 19 18 17 21 21 C 1.38552 * 119.35392 * 0.27754 * 20 19 18 22 22 C 1.50711 * 119.54804 * 179.97438 * 21 20 19 23 23 F 1.39893 * 109.47320 * 89.99573 * 22 21 20 24 24 F 1.39896 * 109.46557 * 209.99893 * 22 21 20 25 25 F 1.39897 * 109.46788 * 329.99587 * 22 21 20 26 26 N 1.31526 * 120.90672 * 359.97438 * 21 20 19 27 27 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47469 * 300.00015 * 1 2 3 29 29 H 1.08998 * 109.47341 * 60.00365 * 1 2 3 30 30 H 1.08998 * 109.47050 * 59.99581 * 3 2 1 31 31 H 1.09000 * 109.46820 * 300.00098 * 3 2 1 32 32 H 1.09000 * 109.46634 * 304.99875 * 4 3 2 33 33 H 1.08995 * 109.47065 * 184.99521 * 4 3 2 34 34 H 1.08994 * 109.46755 * 30.00421 * 6 5 4 35 35 H 1.08998 * 109.46527 * 150.00447 * 6 5 4 36 36 H 0.96993 * 120.00447 * 179.97438 * 10 9 7 37 37 H 1.07997 * 120.46795 * 0.03872 * 18 17 15 38 38 H 1.07994 * 120.75755 * 179.73759 * 19 18 17 39 39 H 1.08005 * 120.32041 * 180.29572 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.2570 -0.8732 -1.2966 7 6 5.7063 -1.1132 -0.9606 8 1 6.3537 -0.2787 -0.7351 9 6 6.2055 -2.3982 -0.9401 10 7 5.4170 -3.4145 -1.2142 11 14 8.0018 -2.6959 -0.5229 12 1 8.6700 -1.3967 -0.2565 13 1 8.0937 -3.5569 0.6834 14 1 8.6700 -3.3705 -1.6646 15 6 4.1247 1.3152 -2.3600 16 8 4.4348 0.7913 -3.4117 17 6 3.9092 2.7798 -2.2972 18 6 4.2007 3.5692 -3.4075 19 6 3.9994 4.9382 -3.3316 20 6 3.5025 5.4690 -2.1513 21 6 3.2294 4.6234 -1.0883 22 6 2.6896 5.1959 0.1972 23 9 1.2916 5.2115 0.1500 24 9 3.1112 4.4064 1.2723 25 9 3.1653 6.5011 0.3622 26 7 3.4345 3.3279 -1.1856 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6884 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8507 0.5687 0.8427 33 1 3.9783 2.1767 0.0901 34 1 3.6259 -1.3896 -0.5734 35 1 4.0483 -1.2523 -2.2971 36 1 5.7683 -4.3185 -1.2001 37 1 4.5818 3.1210 -4.3132 38 1 4.2202 5.5764 -4.1744 39 1 3.3298 6.5314 -2.0613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590629552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:06 Heat of formation + Delta-G solvation = -166.446207 kcal Electronic energy + Delta-G solvation = -29837.649147 eV Core-core repulsion = 25139.025319 eV Total energy + Delta-G solvation = -4698.623829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.37755 -47.93180 -47.80034 -40.93934 -38.63585 -37.39559 -35.04311 -33.21318 -32.69557 -32.14160 -29.46273 -27.37362 -26.85579 -25.91336 -24.80072 -23.07208 -22.56635 -22.31947 -19.77998 -18.76607 -18.72584 -18.12867 -17.06328 -16.60277 -16.42650 -16.14652 -15.94966 -15.36744 -15.11485 -14.93542 -14.71161 -14.61012 -14.39359 -14.27523 -14.09876 -13.97999 -13.96483 -13.93515 -13.50692 -13.07273 -12.94227 -12.48858 -12.19376 -11.92328 -11.73050 -11.52075 -11.21385 -10.87369 -10.83131 -10.48748 -10.32888 -10.14373 -9.87512 -9.63224 -9.50546 -9.27412 -9.04248 -8.37267 -7.64835 -5.98335 -4.03122 0.31225 0.66933 2.19376 2.79045 3.25305 3.33538 3.40351 3.44016 3.54245 3.74252 3.82367 4.16367 4.22340 4.31925 4.47663 4.54043 4.60706 4.68876 5.01270 5.06510 5.35987 5.44894 5.51449 5.57112 5.66410 5.71239 5.77281 5.85718 5.89579 6.03979 6.17661 6.57628 7.09994 7.27411 7.47286 7.57878 7.59748 7.98131 8.28478 8.37829 8.81330 9.03659 9.60873 11.09730 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.004223 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.147500 B = 6628.909927 C = 7306.495048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.060 3.940 4 C 0.108 3.892 5 N -0.558 5.558 6 C 0.247 3.753 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.551 3.449 16 O -0.531 6.531 17 C 0.103 3.897 18 C -0.085 4.085 19 C -0.077 4.077 20 C -0.114 4.114 21 C 0.023 3.977 22 C 0.524 3.476 23 F -0.171 7.171 24 F -0.161 7.161 25 F -0.172 7.172 26 N -0.414 5.414 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.262 0.738 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.300 20.613 0.714 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.018 4.018 4 C -0.016 4.016 5 N -0.286 5.286 6 C 0.128 3.872 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.334 3.666 16 O -0.408 6.408 17 C -0.036 4.036 18 C -0.106 4.106 19 C -0.103 4.103 20 C -0.134 4.134 21 C -0.117 4.117 22 C 0.469 3.531 23 F -0.152 7.152 24 F -0.142 7.142 25 F -0.154 7.154 26 N -0.127 5.127 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.220 19.359 0.910 21.051 hybrid contribution 0.776 0.718 -0.132 1.066 sum -7.444 20.077 0.777 21.426 Atomic orbital electron populations 1.22661 0.82286 1.02320 0.99052 1.88056 1.18560 1.27875 1.95172 1.22928 0.95088 0.84324 0.99455 1.22020 0.91522 1.00399 0.87630 1.48140 1.61026 1.11506 1.07972 1.19450 0.96080 0.72340 0.99328 1.21471 0.95101 0.92582 1.47466 0.92467 1.24910 0.97930 0.95884 0.95254 1.69953 1.35312 0.98903 1.48902 0.86458 0.84944 0.78155 0.77931 1.19866 1.20954 1.20935 1.17653 0.80011 0.83699 0.85198 1.90779 1.48987 1.71747 1.29292 1.21887 0.96364 0.96506 0.88864 1.22435 0.94736 0.93619 0.99793 1.21652 0.95967 0.94994 0.97656 1.21958 0.97137 1.01405 0.92887 1.21084 1.04039 0.92241 0.94331 1.17833 0.75785 0.75617 0.83865 1.93239 1.29165 1.96259 1.96578 1.93255 1.89637 1.73810 1.57543 1.93203 1.88225 1.38003 1.95941 1.67887 1.09425 1.10321 1.25060 0.89920 0.94715 0.94859 0.93309 0.93891 0.89761 0.86858 0.93508 0.93837 0.92811 0.82207 0.82885 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.38 -7.05 10.41 -35.23 -0.37 -7.42 16 3 C 0.06 1.00 5.51 37.16 0.20 1.20 16 4 C 0.11 2.03 5.37 -4.04 -0.02 2.00 16 5 N -0.56 -12.53 2.42 -176.05 -0.43 -12.96 16 6 C 0.25 6.68 5.15 -5.19 -0.03 6.65 16 7 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 11 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 15 C 0.55 11.74 7.59 -12.18 -0.09 11.65 16 16 O -0.53 -13.00 15.90 5.35 0.09 -12.91 16 17 C 0.10 1.66 6.49 -83.01 -0.54 1.12 16 18 C -0.09 -1.05 9.63 -39.06 -0.38 -1.43 16 19 C -0.08 -0.66 10.17 -39.31 -0.40 -1.06 16 20 C -0.11 -1.00 9.44 -39.32 -0.37 -1.37 16 21 C 0.02 0.27 6.30 -82.60 -0.52 -0.25 16 22 C 0.52 5.72 3.43 36.01 0.12 5.84 16 23 F -0.17 -1.88 17.30 2.25 0.04 -1.84 16 24 F -0.16 -1.99 17.03 2.25 0.04 -1.95 16 25 F -0.17 -1.66 16.44 2.25 0.04 -1.62 16 26 N -0.41 -6.02 4.02 -6.06 -0.02 -6.04 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.72 6.90 -51.93 -0.36 0.36 16 32 H 0.08 1.65 8.02 -51.93 -0.42 1.23 16 33 H 0.11 1.95 5.24 -52.18 -0.27 1.67 16 34 H 0.05 1.33 7.83 -51.93 -0.41 0.92 16 35 H 0.04 1.31 7.38 -51.93 -0.38 0.93 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.16 1.91 7.66 -52.49 -0.40 1.51 16 38 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.15 0.85 7.60 -52.48 -0.40 0.46 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -33.71 349.97 -5.25 -38.96 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.30 Total: -2.55 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -1.33 Total: 12.14 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.29 Total: -45.16 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.28 Total: -20.33 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.71 -5.25 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.487 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds